LOC110522032 (LOC106573385)


Basic Information

Item Value
gene id LOC110522032
gene name LOC106573385
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 35753339 ~ 35767069 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600098.2
GCCTAGCTACTTCCGTTTCTACGTAGCAACATAACCACTGAATAGAACGCGACGGTAGTGTAGAAGGAATATCTTTGGAAGCTGTTTGCTGGACTAAAACAACATTGATTTGACAGCTAACGTTAGTCAGCACCTGCAAATATGGCAGAAGTCGAAGAGACACTAAAGAGAATTCAAACTCACAAAGGTGTAATTGGAACAATAGTTGTTAATGCCGAGGGTATCCCAATCAGAACTACCTTAGACAACTCCACCACGGTGCAGTATGCTGGCCTGCTGCACCAGCTCACTATGAAAGCCAGAAGCACAGTCCGAGACATCGACCCTCAGAACGACCTGACCTTCCTCCGCATCCGCTCCAAGAAGCATGAGATCATGGTGGCACCTGACAAGGAGTATCTATTGATAGTCATCCAGAACCCCAGTGAATAGCCCCAGGAGGTTCCTGTGAGAGTCAGGCAGTAGCTCCTCACACACTGATCTTTGTCTCTTAAGAATATATGTTTTGTTAAACTGGACCACATATTTTGCTTTGTGCATTTTCTCCTTTTTCCACTCTGCAATGTTTCCTTATTCTATTCATTCTCCTTCTTAGCCATTGTcattaacaaataaaaaatggaaGAAACAAGGACATCATAACAATTGGA
>TU42417
ACGTAGCAACATAACCACTGAATAGAACGCGACGGTAGTGTAGAAGGAATATCTTTGGAAGCTGTTTGCTGGACTAAAACAACATTGATTTGACAGCTAACGTTAGTCAGCACCTGCAAATATGGTATCCCAATCAGAACTACCTTAGACAACTCCACCACGGTGCAGTATGCTGGCCTGCTGCACCAGCTCACTATGAAAGCCAGAAGCACAGTCCGAGACATCGACCCTCAGAACGACCTGACCTTCCTCCGCATCCGCTCCAAGAAGCATGAGATCATGGTGGCACCTGACAAGGAGTATCTATTGATAGTCATCCAGAACCCCAGTGAATAGCCCCAGGAGGTTCCTGTGAGAGTCAGGCAGTAGCTCCTCACACACTGATCTTTGTCTCTTAAGAATATATGTTTTGTTAAACTGGACCACATATTTTGCTTTGTGCATTTTCTCCTTT

Function

NR:

description
PREDICTED: dynein light chain roadblock-type 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600098.2 False 650 mRNA 0.43 4 35753339 35767069
TU42417 True 454 lncRNA 0.46 3 35753359 35766969

Neighbor

gene id symbol gene type direction distance location
LOC110521983 LOC106573386 coding upstream 22276 35709824 ~ 35731063 (+)
LOC110521975 LOC106561266 coding upstream 317791 35382733 ~ 35435548 (+)
LOC118966681 NA coding upstream 387665 35362815 ~ 35365674 (+)
LOC110521950 LOC106573403 coding upstream 476285 35198681 ~ 35281121 (+)
LOC118964549 shank3 coding upstream 574894 35106960 ~ 35178445 (+)
LOC110522073 LOC106573381 coding downstream 48392 35815461 ~ 35891607 (+)
LOC110522113 LOC106573380 coding downstream 155913 35922982 ~ 35938680 (+)
LOC110522059 LOC106573371 coding downstream 320067 36087136 ~ 36116437 (+)
rad52 rad52 coding downstream 366408 36133477 ~ 36140940 (+)
LOC110522068 erc1 coding downstream 433232 36200301 ~ 36231196 (+)
G37517 LOC100196677 non-coding upstream 1705 35750313 ~ 35751634 (+)
G37513 NA non-coding upstream 14014 35739118 ~ 35739325 (+)
G37510 NA non-coding upstream 18454 35734570 ~ 35734885 (+)
G37509 NA non-coding upstream 19370 35733681 ~ 35733969 (+)
G37508 NA non-coding upstream 20746 35732278 ~ 35732593 (+)
G37585 NA non-coding downstream 70981 35838050 ~ 35838417 (+)
G37587 NA non-coding downstream 73622 35840691 ~ 35875934 (+)
G37589 NA non-coding downstream 77896 35844965 ~ 35845958 (+)
G37591 NA non-coding downstream 97348 35864417 ~ 35869112 (+)
G37450 NA other upstream 161412 35591390 ~ 35591927 (+)
LOC110521947 LOC106573413 other upstream 959595 34763838 ~ 34808250 (+)
LOC110521835 LOC106573423 other upstream 1261580 34490120 ~ 34507419 (+)
G35700 NA other upstream 1792892 33960060 ~ 33960447 (+)
G37719 LOC106573365 other downstream 374004 36141073 ~ 36143962 (+)
G38652 NA other downstream 1075539 36842608 ~ 36883892 (+)

Expression


Co-expression Network