G63784


Basic Information

Item Value
gene id G63784
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 57887906 ~ 57941031 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU70718
ACTTTAAATGCTTTTATTGCTAtccattttcatttttttttccaGAACAAGATTTATAAAGCGGATGTGAGGGTCACTCAGTGTAAACATGAGACGACAAGAAAATTAGGCAAAGCTTTTCCATTTTTGACACCGTCAAAATTATAATTGTCTTCAATCAAAACAAAAAGGCAGATTTTTTTTCTCTATATGTAGTTAATGTCTACGGTCACATACAATAACCCCTTAAAAGGCAGACAGTTGTTCTGTAAAGTTTAACAACAAAATGAAACAAAGCAGCAGTTGTTAATTCAAATCTACTTTAAAAGACACCAGAAGGAAGGGGTACAGCAGCCTGATtccaggtctgtttgtgctgtcttgccaactcctctATGGGCAGCAGTGGCAAGACAGCATAAAtagatttgggaccaggctaggggTACAGTGGGGGCCAATATTACTTAGACAATACTGTAGGACATGATTAGATCAAAATAAACAGTATATCAACTGATTGGATCTTTTAGACCATAGAAATAGtaaaccatagaaatataatctatgGTTTGGACTCCAGTCCATTTCAGGCATAATGGAAACTAAAACTCCAAACACACTGAAACTACATGACATGGATATGTGGGAACTAAGCCCTGTGTAATCCTCAAAATAAGCGTGGGTTACCATAGTGACATTGTCTAGGGTGGTCAACAACATCCCAGACTATAACAGCACTCACAGCAACTGAACGACACACAGATTTAGTTACAATATCACTTCTGAACAAGAAAACATAATACAAGTGCTACTAAACACAGAATTACTTTTCATGTACATCattcacattttttttgtatatatttttaaaataattaATTTCTTTAATAGTTTTGACTTTGAACAAGACAGACGAGgcaaggggaaaaaaaacaatattttacCCGCACTCCTAACGGAAGAGTTGACATGGGATTGGTCGTTTTTGGTGAGTGGTTTAAGAGCTATACAGTTTTTGGTATGCGGGTGTGAGTCAATGGTTAGACTGGTTTAGCCtattgatacagttgaagtcagaagtttacatacacttaggttggagtcattaaaactcatttttcaacaactccacaaatgtcttgttaacaaactatagttttggcaagtcggttaggacatctattttgtgcttGACcaaagtaatatttccaacaattgtttacagatagattatttaacttacaattcctgtgggtcagaagtttacatacactcaattagtatttggtagcattacctttaaattgtttaacttgggtcaaacgtttcaggtagccttccacaagcttccgacaataagttgggtgaattt
>TU70717
ACTTTAAATGCTTTTATTGCTAtccattttcatttttttttccaGAACAAGATTTATAAAGCGGATGTGAGGGTCACTCAGTGTAAACATGAGACGACAAGAAAATTAGGCAAAGCTTTTCCATTTTTGACACCGTCAAAATTATAATTGTCTTCAATCAAAACAAAAAGGCAGATTTTTTTTCTCTATATGTAGTTAATGTCTACGGTCACATACAATAACCCCTTAAAAGGCAGACAGTTGTTCTGTAAAGTTTAACAACAAAATGAAACAAAGCAGCAGTTGTTAATTCAAATCTACTTTAAAAGACACCAGAAGGAAGGGGTACAGCAGCCTGATtccaggtctgtttgtgctgtcttgccaactcctctATGGGCAGCAGTGGCAAGACAGCATAAAtagatttgggaccaggctaggggTACAGTGGGGGCCAATATTACTTAGACAATACTGTAGGACATGATTAGATCAAAATAAACAGTATATCAACTGATTGGATCTTTTAGACCATAGAAATAGtaaaccatagaaatataatctatgGTTTGGACTCCAGTCCATTTCAGGCATAATGGAAACTAAAACTCCAAACACACTGAAACTACATGACATGGATATGTGGGAACTAAGCCCTGTGTAATCCTCAAAATAAGCGTGGGTTACCATAGTGACATTGTCTAGGGTGGTCAACAACATCCCAGACTATAACAGCACTCACAGCAACTGAACGACACACAGATTTAGTTACAATATCACTTCTGAACAAGAAAACATAATACAAGTGCTACTAAACACAGAATTACTTTTCATGTACATCattcacattttttttgtatatatttttaaaataattaATTTCTTTAATAGTTTTGACTTTGAACAAGACAGACGAGgcaaggggaaaaaaaacaatattttacCCGCACTCCTAACGGAAGAGTTGACATGGGATTGGTCGTTTTTGGTGAGTGGTTTAAGAGCTATACAGTTTTTGGTATGCGGGTGTGAGTCAATGGTTAGACTGGTTTAGCCtattgatacagttgaagtcagaagtttacatacacttaggttggagtcattaaaactcatttttcaacaactccacaaatgtcttgttaacaaactatagttttggcaagtcggttaggacatctattttgtgcttGACcaaagtaatatttccaacaattgtttacagatagattatttaacttacaattccaatgggtcagaagtttacatacact

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70718 False 1354 lncRNA 0.36 2 57887906 57941031
TU70717 True 1256 lncRNA 0.36 2 57897566 57941031

Neighbor

gene id symbol gene type direction distance location
cdh23 cdh23 coding downstream 327482 56904609 ~ 57560442 (-)
smoc2 smoc2 coding downstream 1014522 56791621 ~ 56873384 (-)
LOC110521481 LOC106573508 coding downstream 1343608 56535669 ~ 56544298 (-)
LOC110525190 LOC106573044 coding downstream 1740502 55901897 ~ 56147404 (-)
LOC110525582 fgfr2 coding upstream 228459 58166565 ~ 58282805 (-)
LOC110532479 ate1 coding upstream 412614 58353645 ~ 58535096 (-)
LOC110525605 LOC106576888 coding upstream 624199 58565230 ~ 58569247 (-)
habp2 habp2 coding upstream 650076 58591107 ~ 58599375 (-)
LOC110525652 LOC106576887 coding upstream 658129 58599160 ~ 58613936 (-)
G63566 NA non-coding downstream 93222 57773043 ~ 57794684 (-)
G63415 NA non-coding downstream 366956 57520305 ~ 57520950 (-)
G63372 NA non-coding downstream 438230 57449411 ~ 57449676 (-)
G63370 NA non-coding downstream 439604 57448071 ~ 57448302 (-)
G63867 NA non-coding upstream 58245 57999276 ~ 57999504 (-)
G64725 NA non-coding upstream 92479 58033510 ~ 58100951 (-)
G64810 NA non-coding upstream 222134 58163165 ~ 58163722 (-)
G64813 NA non-coding upstream 224460 58165491 ~ 58165697 (-)
G63328 NA other downstream 489418 57397194 ~ 57398488 (-)
G63093 NA other downstream 825058 57035667 ~ 57062848 (-)
G61978 NA other downstream 1353931 56524970 ~ 56533975 (-)
G61715 NA other downstream 1733988 56153430 ~ 56153918 (-)
G61563 NA other downstream 2054546 55832825 ~ 55833928 (-)
G65147 NA other upstream 843711 58784742 ~ 58785617 (-)
LOC110525695 LOC106576879 other upstream 1203342 59144373 ~ 59199471 (-)
LOC110526097 LOC106576849 other upstream 2489176 60430184 ~ 60495300 (-)
G68736 NA other upstream 3741247 61682278 ~ 61686308 (-)
LOC110526417 LOC106576819 other upstream 4040700 61981652 ~ 61983330 (-)

Expression


Co-expression Network