LOC110520830 (LOC106605779)


Basic Information

Item Value
gene id LOC110520830
gene name LOC106605779
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 18994838 ~ 19000210 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036940820.1
AATTCCCGTAAAGCAAAATCGTCCCACGGCTGAATGTAATTGGGGACGTCTGCCATAGGATATATAATCATTAATACCTGAACAAGCTTCTTTCAGAGACGCAGGAGAAACAGGCCAGCTCAGGGTGACCATCTGTAACATCTTACGTGTTACTACTACAACTGAACCAGCTACTACCACACCTGTACCCAGCATCATGCTCCTTGTCAGACTGACTGCGTTCACCTTGCTGGCTGCAGTTTGCTGTACACTACCAGCTGCAGCGACGAGATTGGTCACTTGTGACAATGGAGAAAACGTCCAGTTCCTGATCTGTGATTCTGGAGTGATCTTCATTGAGAGAGCTCTGTATGGAAGGACTGACGGAACCACCTGCAGAGAAGGACGACCTGCCAACCAGCTGACCAACACACAGTGTTCACAGACGGGCACCCTGGAGGTCCTCTCACAGAGGTGCAATGGGAAACAGGTGTGTGAAGTGAACACTGAAGTCTTCCGTACTTCTGACCCCTGTGTTGGAATCTACAAATACCTGGATACCACCTACACCTGCAGCCCAGCAACACGCAGCATCACGTGTGAAGGCTCTGATGTTCAACTAGAATGTGATGAAGGTACGATCCAGATCCACAGTGCCAACTATGGCCGCCGTGACCAGCTAGTGTGTTCCTTTAATCGGCCCGCTAACCAACTAGCCAACACCAACTGCCTCAGCCAATCCACCACTGCCAGTAAGGTGGCAAAGAGGTGTAATGGGAAGAGCCAGTGTGACGTCCCGGTGTCCAACTCTCTGTATGGAGATCCCTGTGTAGGAACCTACAAGTACCTGGATGTGGCGTACACCTGTGGCTAAACGCAATCTTCTGAGGAACAAAGACCAGAGAGACTACTTGGATATCTTCCTCTTCATTGGGTGGATGTCTTTCTTTCCGGTCCTCTCGCCTCCTTCTGAAATCTCAATTGAGTGTAAAATCAATGTAAATCACATTAATTGTGTATTTGGTCATAGGCATAATTTGTGTGTGGTAACATGTTTTGAAATGAGGCCCCTCTGGATCCTTATCCCTGGTGCTGCAGCAAGGCATGGTCAAGAGGATGAATGGAGAAATAAAACATTAACCCCAAAAAATGAACTTTATTTCAAATAACATTGTTACCATAATACTTAGTGCACTTTGTGTACTAAAGTATTTCTTCAAAACAATGTTGATCTTCTAAACTGTGCTGTTTGATCTGAATTAAACTAAGCAGCATAGACCAGA
>XM_036940811.1
TTCCCGTAAAGCAAAATCGTCCCACGGCTGAATGTAATTGGGGACGTCTGCCATAGGATATATAATCATTAATACCTGAACAAGCTTCTTTCAGAGACGCAGGAGAAACAGGCCAGCTCAGGGTGACCATCTGTAACATCTTACGTGTTACTACTACAACTGAACCAGCTACTACCACACCTGTACCCAGCATCATGCTCCTTGTCAGACTGACTGCGTTCACCTTGCTGGCTGCAGTTTGCTGTACACTACCAGCTGCAGCGACGAGATTGGTCACTTGTGACAATGGAGAAAACGTCCAGTTCCTGATCTGTGATTCTGGAGTGATCTTCATTGAGAGAGCTCTGTATGGAAGGACTGACGGAACCACCTGCAGAGAAGGACGACCTGCCAACCAGCTGACCAACACACAGTGTTCACAGACGGGCACCCTGGAGGTCCTCTCACAGAGGTGCAATGGGAAACAGGTGTGTGAAGTGAACACTGAAGTCTTCCGTACTTCTGACCCCTGTGTTGGAATCTACAAATACCTGGATACCACCTACACCTGCAGCCCAGCAACACGCAGCATCACGTGTGAAGGCTCTGATGCTCAACTAGAATGTGATGAAGGTACGATCCAGATCCACAGTGCCAACTATGGCCGCCGTGACCAGCTAGTGTGTTCCTTTAATCGGCCCGCTAACCAACTAGCCAACACCAACTGCCTCAGCCAATCCACCACTGCCAGTAAGGTGGCAAAGAGGTGTAATGGGAAGAGCCAGTGTGACGTCCCGGTGTCCAACTCTCTGTATGGAGATCCCTGTGTAGGAACCTACAAGTACCTGGATGTGGCGTACACCTGTGGCTAAACGCAATCTTCTGAGGAACAAAGACCAGAGAGACTACTTGGATATCTTCCTCTTCATTGGGTGGATGTCTTTCTTTCCGGTCCTCTCGCCTCCTTCTGAAATCTCAATTGAGTGTAAAATCAATGTAAATCACATTAATTGTGTATTTGGTCATAGGCATAATTTGTGTGTGGTAACATGTTTTGAAATGAGGCCCCTCTGGATCCTTATCCCTGGTGCTGCAGCAAGGCATGGTCAAGAGGATGAATGGAGAAATAAAACATTAACCCCAAAAAATGAACTTTATTTCAAATAACATTGTTACCATAATACTTAGTGCACTTTGTGTACTAAAGTATTTCTTCAAAACAATGTTGATCTTCTAAACTGTGCTGTTTGATCTGAATTAAACTAAGCAGCATAGACCAGA
>XM_036940828.1
ACAAAAAGTGAGCGCGAGAAGGGGGTGACCTGGGGAATTCTGAGGTGACCATCTGTAACATCTTACGTGTTACTACTACAACTGAACCAGCTACTACCACACCTGTACCCAGCATCATGCTCCTTGTCAGACTGACTGCGTTCACCTTGCTGGCTGCAGTTTGCTGTACACTACCAGCTGCAGCGACGAGATTGGTCACTTGTGACAATGGAGAAAACGTCCAGTTCCTGATCTGTGATTCTGGAGTGATCTTCATTGAGAGAGCTCTGTATGGAAGGACTGACGGAACCACCTGCAGAGAAGGACGACCTGCCAACCAGCTGACCAACACACAGTGTTCACAGACGGGCACCCTGGAGGTCCTCTCACAGAGGTGCAATGGGAAACAGGTGTGTGAAGTGAACACTGAAGTCTTCCGTACTTCTGACCCCTGTGTTGGAATCTACAAATACCTGGATACCACCTACACCTGCAGCCCAGCAACACGCAGCATCACGTGTGAAGGCTCTGATGCTCAACTAGAATGTGATGAAGGTACGATCCAGATCCACAGTGCCAACTATGGCCGCCGTGACCAGCTAGTGTGTTCCTTTAATCGGCCCGCTAACCAACTAGCCAACACCAACTGCCTCAGCCAATCCACCACTGCCAGTAAGGTGGCAAAGAGGTGTAATGGGAAGAGCCAGTGTGACGTCCCGGTGTCCAACTCTCTGTATGGAGATCCCTGTGTAGGAACCTACAAGTACCTGGATGTGGCGTACACCTGTGGCTAAACGCAATCTTCTGAGGAACAAAGACCAGAGAGACTACTTGGATATCTTCCTCTTCATTGGGTGGATGTCTTTCTTTCCGGTCCTCTCGCCTCCTTCTGAAATCTCAATTGAGTGTAAAATCAATGTAAATCACATTAATTGTGTATTTGGTCATAGGCATAATTTGTGTGTGGTAACATGTTTTGAAATGAGGCCCCTCTGGATCCTTATCCCTGGTGCTGCAGCAAGGCATGGTCAAGAGGATGAATGGAGAAATAAAACATTAACCCCAAAAAATGAACTTTATTTCAAATAACATTGTTACCATAATACTTAGTGCACTTTGTGTACTAAAGTATTTCTTCAAAACAATGTTGATCTTCTAAACTGTGCTGTTTGATCTGAATTAAACTAAGCAGCATAGACCAGA

Function

NR:

description
PREDICTED: L-rhamnose-binding lectin CSL2-like isoform X1

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036940820.1 False 1262 mRNA 0.46 11 18994838 19000210
XM_036940811.1 False 1260 mRNA 0.47 10 18994840 19000210
XM_036940828.1 True 1182 mRNA 0.47 10 18995233 19000210

Neighbor

gene id symbol gene type direction distance location
LOC118938275 stl2 coding upstream 3471 18984795 ~ 18991367 (+)
stl2 stl2 coding upstream 17327 18971209 ~ 18977511 (+)
LOC110517769 stl2 coding upstream 33443 18956065 ~ 18961395 (+)
LOC110508936 stl2 coding upstream 42686 18946478 ~ 18952152 (+)
LOC110514612 stl2 coding upstream 55435 18934210 ~ 18939403 (+)
LOC110503718 LOC102193556 coding downstream 131695 19131905 ~ 19259074 (+)
LOC110512786 LOC105019084 coding downstream 307366 19307576 ~ 19347300 (+)
LOC110534362 LOC106575226 coding downstream 392527 19392737 ~ 19433631 (+)
LOC110537022 LOC106576929 coding downstream 443921 19444131 ~ 19481383 (+)
LOC110537095 LOC106576906 coding downstream 525953 19526163 ~ 19528660 (+)
G119245 stl2 non-coding upstream 2069 18934673 ~ 18992769 (+)
G119241 NA non-coding upstream 172275 18821888 ~ 18822563 (+)
LOC118938256 NA non-coding upstream 197662 18773292 ~ 18797176 (+)
G119222 NA non-coding upstream 250595 18740694 ~ 18744243 (+)
G119159 grwd1 non-coding upstream 331727 18662619 ~ 18663111 (+)
G119330 NA non-coding downstream 52598 19052808 ~ 19057561 (+)
G119317 NA non-coding downstream 61886 19062096 ~ 19063167 (+)
G119318 NA non-coding downstream 76916 19077126 ~ 19078187 (+)
G119367 NA non-coding downstream 135352 19135562 ~ 19135783 (+)
G119372 NA non-coding downstream 139977 19140187 ~ 19140667 (+)
G119160 NA other upstream 322518 18670513 ~ 18672320 (+)
G119153 LOC106605761 other upstream 358797 18633839 ~ 18636041 (+)
LOC110536658 LOC106577300 other upstream 517704 18457284 ~ 18481741 (+)
G117735 NA other upstream 1536816 17455765 ~ 17458022 (+)
G119794 u2af2 other downstream 506441 19506651 ~ 19507338 (+)
LOC110537226 LOC106575133 other downstream 676525 19676656 ~ 19683059 (+)
G119952 nat14 other downstream 701889 19702099 ~ 19703788 (+)

Expression


Co-expression Network