LOC110503718 (LOC102193556)


Basic Information

Item Value
gene id LOC110503718
gene name LOC102193556
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19131905 ~ 19259074 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961707.1
AatacccaccctctctctcctattggcCCTGGCGGAGTGGGCAGGACTGGTCACGCCCTCCCCACACCTCTTGCTCCGCCCccgggagcgggagagagacccGGGGACTGTAATGAACTTCAACATCGCTGTGATCCACGCGGGGGCCAGCGTGCAGGTAGAGGCGGCGGCCGGGCCCGGGGGAAGGGTGCTCTACCCTGGGTTTGGCCGGGCACACAGCTCCCTGGGGGAGAGCGTGATCACCCAGTGGGGCTCTGCAAACGTCATCTGGCTCCAGGTGAATGACAGTAGTCCTAAGACTCTGCTGTCCCAGCTGTGTGACCTGCTGGCAGCGAGGCCCCTACAGGGCCTGGTCTACGAGGAGGAGAGGCCACCACCCACCGCCTGGGGACCCCTGGCCCCCATGTTAGAGTTTGTCTCTGCTCAGACTGGACTACCCATAGTGGCTGTAGGCGGAGGAGCAGGGCTGGGGAGGATGCAACAGGAGTCAGGCTCCATCTTCCTCCAGTTCAGCTCATCCACCAGCCTCCAGCTGGAGGTCATCTTCAAAATACTAGAGGAGTATGACTGGACCACCTTCTCAGTGGTGTCCACCCGTCACCATGGCTACCAGGACTTCCTGTCAGTGGTGGACGGCCTGACGGACGGCTCGTTCATCGGCTGGGAGAAGAAGAGCGTGGTCATGCTGAACGTGACGGACGACCCGGGAGGGGCACGCACGCGTAGGCTGCTCAAGGAGAACGAGGCGCAGGTACGTCTTCTCTACTGTTCCCAGGAGGAGGCCGAGCTGGTGTTTAAAGCAGCCTGGGCCGCGGGTCAGGCTGGACCCTCTCACATGTGGTTCGCTGTGGGGCCAGCCCTGTCCGGCCTTGGCATGGCGGGTCTCCCCAGGGCCCTGTTCGCCGTGCGTCCACAGGGCTGGAAGGACAAGCCCCGCATGAGGATCGCCCGGGGCGTGTCCATACTGACCCATGGGGCGGTGGCACTGCGCCGCGACTATGGGGCCTCTGGAGGGCCAAACTTTGTTACCAACTGCATGACGGAATCCAATCAAACACACAGGGTGCGGGGGAGGAtgagGTATTTCAGCAACATCACGTTGGGTGGCAGAGACTACTCTTTTGACAGTGACGGTTACCTGGCCAACCCCGTCCTAGAAGTCATCTCCTATACACCTGGCAAAGGCTGGGAGGATGTTGGGATGTGGGAGAACGGTAAGTTGGATTTGGTTTATCCAGCGTGGTCGCGTTACGGTCCATTCCTCCAACCGCCTGATGGCGCCCAGCACCTGCGCGTGGTCACTCTGGAGGAACGTCCGTTTGTCATCGTGGAGCTGGCTGACGCCGCCTCCAACACCTGCATCAGAGACTCTGTACCCTGCCGACGACCCCTCAACGCCAGtATTCCTGTCCAGGATCCCCCAAAGAAACAGTGCTGTAAGGGCTTCTGCATCGACATCCTCAAACGATTGGCCAAGATCGTGGGTTTCACCTATGACCTCTACCTGGTGACCAATGGAAAGCACGGGAAGAAGATTGATGGAGTGTGGAATGGCATGATTGGAGAGGTGGTGGGACAGCGAGCAGATATGGCCATCGGATCCCTCACCATCAACGAGGAGAGGTCAGAGGTCGTGGACTTCTCCGTCCCCTTCGTGGAGACGGGCATCAGCGTCATGGTCTCCCGTAGCAATGGAACCGTCTCACCCTCTGCCTTCCTGGagcCCTACAGTCCAGCGGTGTGGGTGATGATGTTCGTCATGTGCCTGACCGTGGTGGCTGTGACCGTCTTCATATTTGAGTTCTTCAGTCCAGTCGGCTACAACCGCAGCCTTTCCAGCGGAAAGAagGCAGGAGGCTCTACGTTCACCATAGGAAAGTCTGTGTGGTTGCTGTGGGCCATTGTGTTCAATAACTCGGTCCCAGTGGAGAACCCCAGAGGAACCACCAGTAAGATCATGGTGCTGATCTGGGCCTTCTTCGCGGTCATCTTCCTGGCTTCCTACACAGCCAACCTGGCTGCCTTCATGATCCAGGAGGAGTATATAGACACTGTCTCTGGACTCTCAGACAAAAAGTTCCAGCACCCCACAGAGCAGTACCCCCCTCTGAAGTTTGGCACGGTGCCCAATGGAAGTACAGAGAAGAACATCCGCAGTAACTACCCTGGCATGCACCATTACATGGTCAAATATAaccagagaggggtggaggacgCCATTAACAACCTCAAGACTggGAAGTTGGATGCCTTTATCTACGATGCAGCTGTGTTGAACTACATGGCCAGGAAAGACGAGGGTTGTAAGGTGATGACCATAGGCTCTGGGAAGGTATTTGCCACCACAGGCTACGGTATCGCCCTGCACAAGAACTCCCGCTGGAAACGCCCCCTCGACCTGGCCCTGCTGCAGCTGGTGGGAGACgatGAGATTGAGATGCTGGAGCGTCTGTGGCTGTCTGGTATCTGTCACAATGATAAGATTGAGGTGATGAGCAGTAAGCTGGACATAGACAACATGGCGGGTGTCTTCTACATGCTACTGGTGGCTATGGGGCTCAGTCTGCTGGTATTTGCCTGGGAGCACCTGGTCTACTGGAGGCTCAGACACTGCATGGCTACCAGCTCCGGGAGACTGGACTTCCTACTGGCCATCAGTAGGgGCATGTACAGTTGTTGTAGCTTTGAGGATGAAACCACGCCGGGCGGGGCCAAATCCTCCATGGCTATGCTCCCCCACCATCCTGGCACCATGGTAACAGTCCCGCCCCCGCCACACTTGGTCGGTGCGTCGTCAACCAACCCGGCCCTGACCATGGCGCAGCAGCAACAGTCACAGCCCGTCTACAAAACACAACTACCTGGATCCCCTCCCACCGTGGTGCATTCTGGGACGGCGCTGGGGCCCTCCAACACTCCCATGCTGGGGGCGCCCCTGCCCTGCTCCACATTCCTCCCCCGGCCCGATCGCAGACTGGCCGTGGTGGACCGCTGGAGGCTGCCCAAGGCTGGGACCGCCACCAACCCCATGGCCGTGCACGGGACCGTCGCAGACATGGGACCCTTCCCCCAGAAGGTGGCTCCGACCTGGGGCACGACAGCTGGAGGAGTGGgagttggtggtggtggggggctgGATGGATATAAACGCTACTATGGACCCATCGACCCTGAGGGTCTGGGGCCCTGTATGGACCAGCCGGCAGGGTCCCAGACCCCCAAAACAGCCCCCAGGAGCCACCCTCAACCCCCTCCCGCCACTGTGGCCTTCTACTCAGAGAAAGGTCCTGACCAGGGGGTGGGGAAGAGGGTGGTGGGAGGTGGTGGTACTGGGTgtcaggggaagggaggggtcaAACCTTTGGGGACGCCTCGGCTGCCTCCTAAAAGCCAAGCCGTGGGCGTGACCCCAGTCCCTCTGCCCACTAACCCCCCGCTGCCACaaccctccccccctctcccctcatcctttTGGAGGAAGCGCCGGCCCAAGAAGCCCAAAGAGCCAGGCGGGCCTCTGTACGAGAACATCCTACCGCTGGGGcgcaggggaggaggaagggatggagcgagggatggtggagggaggaggggacgccccctctctcctcctctcccactccccgtAACCGTGCCCATGTCCCCCACCTacactcccccttccccctccaccTCACTCCCCTACACCAGCTcaacttcctcctcttcctctaacaCATCGtccacctcttcctctacctcctcctctcgctcctcctctccttcctcctcctcctccttgaccTCTCATAGCACGCGGGAAGGTTTGGACGCAGAGGAcgatgatgaggatgaggagcTGACCGAGGAGTCCAGTCTTCtcctggggagggggagggacagaCAACGTTCAATtatctcctctcgctctctcagtcacGGGCGCCAGCCACCACCTATACCACCCCGAAAACCACGCCCTGCCCGAGGGgcgagaaacagggagagggagagggagagaggaggtagccAGTTGGCCCAGTTACAGGAGTGGTGGGCGGGCtggggtgatagagagagggatcgcagtggaggaggagatgacGAGAGGAAacgagagaagaagaggaggaaagataaagagaagaagaaaaagaagaagaagaggaaaaagagggaggagagggaacgagagcgagacaaagagaggaagagacggagGGTGAAAAAGAAGCGGAAGAAGAAGGCgctgaagaagaggaagaaatcGTCTGGGCGTTCTGAGCAAGAAGAGGGGGATGTGGAGGCAgatagggagggagtgggggatggagggagagaaggagggatgccAGACTACTCTTCCTTTCCAACCCAGTATCGTAGTACGtttggggagaaagggagagattcagcatgggcaggagagagggagcgaggaaggagggagggagaagaggaagaggggggtgatagagaggaggatagcagCAGGAGCAGGGAAAGGCGGCCCAAATCATCCCGTTCCCACTCCAGACATCGACCCCCCAGTAAGCGCTACCCCAAACTCCCCGCCTCGGTCAAGTTTTGGGTGAGCGGAGGAAACGGGGAAGGGGGGGACCCCAACTCTGGaacacccccctcctccctccctcccctcatctcactCTCCAAGAGGCGGAGGAGTGGAGGGGtcgagagaagggagggagggagagaaggagagaagaggcctCTGTTGATGCACTATGAGAAAGGCAGGGCTAACATACAGGAGGGGCTCTCCTTCCATGAGTGGGACTctgaggaggatgatgaggaagatgtgggggaggagaggcagagagacagagcgagggaacgggtggaggagagggtgaggagggcgGGTGGGAGAGGTGCTGTGTCAGAGTCAGAAAGAGACAGGGCAAGAACAGAGGAAAGTTACTCTGATGAGGGCTCATCAGGGGAGTTTGGGCGATTTGAGAGGtactgggaggggagggagggggctggAGGACCAGGGAGTAGTGGGATAGGGGGGATAGGGGGGGGGAGCTGGTTTTTCGGCACATACCCCTCCAGAGAGAAAGGGGGCAGCATCAACAGCAGAGACGACTCTATACTAGGGCGAgtggagggctggggggggggcggggggagaTTCTTGGGGTTCAGGGCCAGGAGGCGGTCACACGGCCATGGGAAGAGAGGAAGCACGGCCCTGTCCCACAGCCAGGAGGAGCTGCTCCCCCACTGCCACAGCTTCAGCGGGGGCTCACGGCCCAAACCCCCTCCCAAACCAGACCAGGGCCAGGCCAAGTCAGGCAGCCAGGCCAGCCTCAGCACACAGCAGCCAGGAGTTGCTAAGCTCCTGTACCAGAGACTACGGTCAGTTCCTCAGCCCGGACGCTTCTACTCCCCCCACCTGCCACTCAAGGCCAAGAGCCTATGCTCCCGACGAGGCTCCGCCCATTTCTCCAGCCTGGAGAGCGAGGTATGA
>TU137673
GGGGACGCCTCGGCTGCCTCCTAAAAGCCAAGCCGTGGGCGTGACCCCAGTCCCTCTGCCCACTAACCCCCCGCTGCCACaaccctccccccctctcccctcatcctttTGGAGGAAGCGCCGGCCCAAGAAGCCCAAAGAGCCAGGCGGGCCTCTGTACGAGAACATCCTACCGCTGGGGcgcaggggaggaggaagggatggagcgagggatggtggagggaggaggggacgccccctctctcctcctctcccactccccgtAACCGTGCCCATGTCCCCCACCTacactcccccttccccctccaccTCACTCCCCTACACCAGCTcaacttcctcctcttcctctaacaCATCGtccacctcttcctctacctcctcctctcgctcctcctctccttcctcctcctcctccttgaccTCTCATAGCACGCGGGAAGGTTTGGACGCAGAGGAcgatgatgaggatgaggagcTGACCGAGGAGTCCAGTCTTCtcctggggagggggagggacagaCAACGTTCAATtatctcctctcgctctctcagtcacGGGCGCCAGCCACCACCTATACCACCCCGAAAACCACGCCCTGCCCGAGGGgcgagaaacagggagagggagagggagagaggaggtagccAGTTGGCCCAGTTACAGGAGTGGTGGGCGGGCtggggtgatagagagagggatcgcagtggaggaggagatgacGAGAGGAAacgagagaagaagaggaggaaagataaagagaagaagaaaaagaagaagaagaggaaaaagagggaggagagggaacgagagcgagacaaagagaggaagagacggagGGTGAAAAAGAAGCGGAAGAAGAAGGCgctgaagaagaggaagaaatcGTCTGGGCGTTCTGAGCAAGAAGA
>TU137674
gaagaggaagaggggggtgatagagaggaggatagcagCAGGAGCAGGGAAAGGCGGCCCAAATCATCCCGTTCCCACTCCAGACATCGACCCCCCAGTAAGCGCTACCCCAAACTCCCCGCCTCGGTCAAGTTTTGGGTGAGCGGAGGAAACGGGGAAGGGGGGGACCCCAACTCTGGaacacccccctcctccctccctcccctcatctcactCTCCAAGAGGCGGAGGAGTGGAGGGGtcgagagaagggagggagggagagaaggagagaagaggcctCTGTTGATGCACTATGAGAAAGGCAGGGCTAACATACAGGAGGGGCTCTCCTTCCATGAGTGGGACTctgaggaggatgatgaggaagatgtgggggaggagaggcagagagacagagcg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961707.1 False 5482 mRNA 0.60 17 19131905 19259074
TU137673 False 909 TUCP 0.35 1 19256586 19257494
TU137674 True 402 lncRNA 0.47 1 19257655 19258056

Neighbor

gene id symbol gene type direction distance location
LOC110520830 LOC106605779 coding upstream 131695 18994838 ~ 19000210 (+)
LOC118938275 stl2 coding upstream 140538 18984795 ~ 18991367 (+)
stl2 stl2 coding upstream 154394 18971209 ~ 18977511 (+)
LOC110517769 stl2 coding upstream 170510 18956065 ~ 18961395 (+)
LOC110508936 stl2 coding upstream 179753 18946478 ~ 18952152 (+)
LOC110512786 LOC105019084 coding downstream 48502 19307576 ~ 19347300 (+)
LOC110534362 LOC106575226 coding downstream 133663 19392737 ~ 19433631 (+)
LOC110537022 LOC106576929 coding downstream 185057 19444131 ~ 19481383 (+)
LOC110537095 LOC106576906 coding downstream 267089 19526163 ~ 19528660 (+)
LOC110537107 LOC106605819 coding downstream 306805 19565879 ~ 19579511 (+)
G119318 NA non-coding upstream 53718 19077126 ~ 19078187 (+)
G119317 NA non-coding upstream 68738 19062096 ~ 19063167 (+)
G119330 NA non-coding upstream 74344 19052808 ~ 19057561 (+)
G119245 stl2 non-coding upstream 139136 18934673 ~ 18992769 (+)
G119241 NA non-coding upstream 309342 18821888 ~ 18822563 (+)
G119411 NA non-coding downstream 9015 19268089 ~ 19268303 (+)
G119412 NA non-coding downstream 9449 19268523 ~ 19269489 (+)
G119413 NA non-coding downstream 11188 19270262 ~ 19271313 (+)
G119414 NA non-coding downstream 12331 19271405 ~ 19274795 (+)
G119415 NA non-coding downstream 17254 19276328 ~ 19286899 (+)
G119160 NA other upstream 459585 18670513 ~ 18672320 (+)
G119153 LOC106605761 other upstream 495864 18633839 ~ 18636041 (+)
LOC110536658 LOC106577300 other upstream 654771 18457284 ~ 18481741 (+)
G117735 NA other upstream 1673883 17455765 ~ 17458022 (+)
G119794 u2af2 other downstream 247577 19506651 ~ 19507338 (+)
LOC110537226 LOC106575133 other downstream 417661 19676656 ~ 19683059 (+)
G119952 nat14 other downstream 443025 19702099 ~ 19703788 (+)
LOC110537243 LOC106576860 other downstream 509196 19768270 ~ 19778335 (+)
G119392 NA non-coding upstream 5063 19227193 ~ 19252592 (+)
G119398 NA non-coding upstream 48424 19208413 ~ 19209231 (+)
G119387 NA non-coding upstream 62685 19194768 ~ 19194970 (+)
G119386 NA non-coding upstream 63421 19193249 ~ 19194234 (+)
G119377 NA non-coding upstream 84974 19172470 ~ 19172681 (+)
LOC110503718 LOC102193556 other upstream 161 19131905 ~ 19259074 (+)

Expression


Co-expression Network