LOC110537022 (LOC106576929)


Basic Information

Item Value
gene id LOC110537022
gene name LOC106576929
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19444131 ~ 19481383 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622737.2
AGCATCTGTGTTGCCCCAAACAGAAGAGCCCTGTTGTAGCCTACATGCACAGCAGCAAATGAATAGCCAGTTTATTCTGATTTTCGAGTAGTCAATCTTATCCGTTCACATCACTGAAGAGTTCCTTCGGATGCGACAAGTTGCTTACGTCGATGGCTCGTTGTGAGAGATAGAGGAACGGACGGGCAGACAGAGCGAACTAGCACTCGCGCAactggaggggagggggagacgcATTCTGACGGAGTACACACACGCATTGGCTACATCTACTGTAGACAAATTCCTGTTTCACTGATGTGTCTGTGTATCCGCTGTATATCTGTTAAAACCATTTCATCATATGGCTGAGTTATGTTTAGTAGAGAAATGACATACAGTTTCTTACACGGTATTTTTTTCACGTAATTTTGTCTTATTACCCCCTGTTTGTTATTTCGAGGCCGTTATTTGtcgtccaccccctctctctctttttctctccatctccttttccTCTCTTTGGGAGTGCGACGGTCTTCGAATAAGCTTCTGAAATAATAAGCCGGCAGTAGCCCAACTATCATGTCCTCCTCAGTGACTGCTTCCTGTGAATAAGAGGACCAGAGCGAGAGCATCCAATCACAATCGAGAGCCTCCACCAGCACATCtttccagtgagagagagagaaagagatagaggccaaagagagagagagagaaaacgagtgcaggaaggagagggggagagagtgagaacagTCGATGGATGCTGTCCGGATTGAGGGGACAGTGCATTCTTCATTAACGAGGAAAAGAAAGATTTCAAAATGGAGTCGAAGGATAGAAACTCGGCGGCAGGGATGGTTTGTGAGAAGGGGATCCAGATCCTCCTCACCACCGTGGGGGCCTTTGCAGCCTTCTGCCTGATGACGGTTTCTATAGGGACGGACTACTGGCTGTACTCCCGCGCCTCCATCTGCAACAGCACCCGCAACCACTCAGACGACCCCCACAACAAGGACAAGAAGGACCCCGGAGCCCTCACCCACTCTGGCCTCTGGAGGATCTGCTGCCTGGAAGgggTGAAGAggggagtgtgttctcagatcAACCACTTCCCTGAGGATGCTGACTTTGACCATGATGGGCCAGAGTATGTTCTACgtatgGTCAGGGCTTCCAACATCTTCCCTATCCTCAGTGCTATCCTGCTGTTGATGGGAGGGGTGTGTATCGGTCTCAGTCGCTTCTATAAGCACAAGAGGAACATCGTCCTGGGAGCAGGCATTCTCTTTGTGGCTGCAGGTCTGAGCAACATCATCGGTGTGATCGTGTACATCTCTGCAGCGCTGGGAGACATCTCCCCTAAGAAGGACGAGGACAAGAAGTGGCAGTACAGCTACGGCTGGTCCTTCTACTTCGGAGGCCTGTCCTTCATCATGGCTGAGATGGTGGGCGTTCTGGCCGTCAACATCTACATCGAAAAGAACAAGGAGCTTCGCTGCCGCTCGCGCACTGACATCTTCAAGGGGACCACGCACGCCATGCTCCGCCTACCCAGCTACCGCTTCCGCCGTCGCTCCCGCTCCTCATCCCGCTCTACTGACCCCTCACGCTCCCGAGACCCCTCGCCGGTGGGGGGAGGCGGGGGGAAGAACTTTGGCCTGCCCCCCTCGGCCATGCTCTCCCAGGGGCCCATGTCTGTGGCCACGCTGCCCAACCCTCACTCTCGCTCCCACACCACCCTGGCGGGGGGCGACATCTCCCTCTACACTCTGTCCCGCGACCCCAAGCTGGCTGGCCTGCCCCCCATGTACGGCACCGTGGACCGCGCCACCCTCTACCAGCTCCACAACTGCTTCCCCAAGgacgggggaggagggggaggagggggtgtgatgaTGAGCGGCACACTGCCCTCTCTGAAGTCCCACAACCCCTCGCTGTCCCAGAATTCCTCCAACTCCAACGCACCCATGGGCAACTCGGTGGGCTCGGGGCCCCCACCCTTCTCCTCGTCCACGgtggagagagaacgagggatggGAACGCTGGACAGGctaaagggagatagagagagcaacTCCAATACGCTCAACAGGAAGACAACACCCgtgtagagaggagggggggagagggagggaacgcTGGACAAGctaaagggagatagagagagcaacTCCAATACACTCAACAGGAAGACAACACCCgtgtagagaggaggggggggagagagggagggaacagggaaggaagagagagagagcaactccAATACGCTCAACAGGAAGACAACACCCgtgta
>XM_021622742.2
AGCATCTGTGTTGCCCCAAACAGAAGAGCCCTGTTGTAGCCTACATGCACAGCAGCAAATGAATAGCCAGTTTATTCTGATTTTCGAGTAGTCAATCTTATCCGTTCACATCACTGAAGAGTTCCTTCGGATGCGACAAGTTGCTTACGTCGATGGCTCGTTGTGAGAGATAGAGGAACGGACGGGCAGACAGAGCGAACTAGCACTCGCGCAactggaggggagggggagacgcATTCTGACGGAGTACACACACGCATTGGCTACATCTACTGTAGACAAATTCCTGTTTCACTGATGTGTCTGTGTATCCGCTGTATATCTGTTAAAACCATTTCATCATATGGCTGAGTTATGTTTAGTAGAGAAATGACATACAGTTTCTTACACGGTATTTTTTTCACGTAATTTTGTCTTATTACCCCCTGTTTGTTATTTCGAGGCCGTTATTTGtcgtccaccccctctctctctttttctctccatctccttttccTCTCTTTGGGAGTGCGACGGTCTTCGAATAAGCTTCTGAAATAATAAGCCGGCAGCCCAACTATCATGTCCTCCTCAGTGACTGCTTCCTGTGAATAAGAGGACCAGAGCGAGAGCATCCAATCACAATCGAGAGCCTCCACCAGCACATCtttccagtgagagagagagaaagagatagaggccaaagagagagagagagaaaacgagtgcaggaaggagagggggagagagtgagaacagTCGATGGATGCTGTCCGGATTGAGGGGACAGTGCATTCTTCATTAACGAGGAAAAGAAAGATTTCAAAATGGAGTCGAAGGATAGAAACTCGGCGGCAGGGATGGTTTGTGAGAAGGGGATCCAGATCCTCCTCACCACCGTGGGGGCCTTTGCAGCCTTCTGCCTGATGACGGTTTCTATAGGGACGGACTACTGGCTGTACTCCCGCGCCTCCATCTGCAACAGCACCCGCAACCACTCAGACGACCCCCACAACAAGGACAAGAAGGACCCCGGAGCCCTCACCCACTCTGGCCTCTGGAGGATCTGCTGCCTGGAAGgggTGAAGAggggagtgtgttctcagatcAACCACTTCCCTGAGGATGCTGACTTTGACCATGATGGGCCAGAGTATGTTCTACgtatgGTCAGGGCTTCCAACATCTTCCCTATCCTCAGTGCTATCCTGCTGTTGATGGGAGGGGTGTGTATCGGTCTCAGTCGCTTCTATAAGCACAAGAGGAACATCGTCCTGGGAGCAGGCATTCTCTTTGTGGCTGCAGGTCTGAGCAACATCATCGGTGTGATCGTGTACATCTCTGCAGCGCTGGGAGACATCTCCCCTAAGAAGGACGAGGACAAGAAGTGGCAGTACAGCTACGGCTGGTCCTTCTACTTCGGAGGCCTGTCCTTCATCATGGCTGAGATGGTGGGCGTTCTGGCCGTCAACATCTACATCGAAAAGAACAAGGAGCTTCGCTGCCGCTCGCGCACTGACATCTTCAAGGGGACCACGCACGCCATGCTCCGCCTACCCAGCTACCGCTTCCGCCGTCGCTCCCGCTCCTCATCCCGCTCTACTGACCCCTCACGCTCCCGAGACCCCTCGCCGGTGGGGGGAGGCGGGGGGAAGAACTTTGGCCTGCCCCCCTCGGCCATGCTCTCCCAGGGGCCCATGTCTGTGGCCACGCTGCCCAACCCTCACTCTCGCTCCCACACCACCCTGGCGGGGGGCGACATCTCCCTCTACACTCTGTCCCGCGACCCCAAGCTGGCTGGCCTGCCCCCCATGTACGGCACCGTGGACCGCGCCACCCTCTACCAGCTCCACAACTGCTTCCCCAAGgacgggggaggagggggaggagggggtgtgatgaTGAGCGGCACACTGCCCTCTCTGAAGTCCCACAACCCCTCGCTGTCCCAGAATTCCTCCAACTCCAACGCACCCATGGGCAACTCGGTGGGCTCGGGGCCCCCACCCTTCTCCTCGTCCACGgtggagagagaacgagggatggGAACGCTGGACAGGctaaagggagatagagagagcaacTCCAATACGCTCAACAGGAAGACAACACCCgtgtagagaggagggggggagagggagggaacgcTGGACAAGctaaagggagatagagagagcaacTCCAATACACTCAACAGGAAGACAACACCCgtgtagagaggaggggggggagagagggagggaacagggaaggaagagagagagagcaactccAATACGCTCAACAGGAAGACAACACCCgtgta

Function

NR:

description
PREDICTED: voltage-dependent calcium channel gamma-4 subunit-like

GO: NA

KEGG:

id description
K04873 CACNG8; voltage-dependent calcium channel gamma-8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622737.2 False 2287 mRNA 0.55 6 19444131 19481383
XM_021622742.2 True 2284 mRNA 0.55 6 19444131 19481383

Neighbor

gene id symbol gene type direction distance location
LOC110534362 LOC106575226 coding upstream 10500 19392737 ~ 19433631 (+)
LOC110512786 LOC105019084 coding upstream 96831 19307576 ~ 19347300 (+)
LOC110503718 LOC102193556 coding upstream 185057 19131905 ~ 19259074 (+)
LOC110520830 LOC106605779 coding upstream 443921 18994838 ~ 19000210 (+)
LOC118938275 stl2 coding upstream 452764 18984795 ~ 18991367 (+)
LOC110537095 LOC106576906 coding downstream 44780 19526163 ~ 19528660 (+)
LOC110537107 LOC106605819 coding downstream 84496 19565879 ~ 19579511 (+)
LOC110537165 LOC106605824 coding downstream 116130 19597513 ~ 19599416 (+)
LOC110537142 LOC106576877 coding downstream 156051 19637434 ~ 19645326 (+)
LOC110537226 LOC106575133 coding downstream 195273 19676656 ~ 19683059 (+)
G119814 NA non-coding upstream 34269 19407962 ~ 19409862 (+)
G119808 NA non-coding upstream 39813 19399449 ~ 19404318 (+)
G119792 NA non-coding upstream 53379 19390447 ~ 19390752 (+)
G119785 NA non-coding upstream 91413 19352427 ~ 19352718 (+)
G119445 NA non-coding upstream 93715 19350208 ~ 19350416 (+)
G119855 NA non-coding downstream 11038 19492421 ~ 19492639 (+)
G119856 LOC106606119 non-coding downstream 11542 19492925 ~ 19494124 (+)
G119795 NA non-coding downstream 23483 19504866 ~ 19506500 (+)
G119866 NA non-coding downstream 37558 19518941 ~ 19519677 (+)
G119883 NA non-coding downstream 71332 19552715 ~ 19562850 (+)
G119245 stl2 other upstream 482666 18934673 ~ 18992769 (+)
G119160 NA other upstream 771811 18670513 ~ 18672320 (+)
G119153 LOC106605761 other upstream 808090 18633839 ~ 18636041 (+)
LOC110536658 LOC106577300 other upstream 966997 18457284 ~ 18481741 (+)
G119794 u2af2 other downstream 25268 19506651 ~ 19507338 (+)
G119952 nat14 other downstream 220716 19702099 ~ 19703788 (+)
LOC110537243 LOC106576860 other downstream 286887 19768270 ~ 19778335 (+)

Expression


Co-expression Network