LOC110537107 (LOC106605819)


Basic Information

Item Value
gene id LOC110537107
gene name LOC106605819
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19565879 ~ 19579511 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622887.2
ATGACAACAGTCCATCCCTAACACATCACTTCATACTCTCTCTACTGCTGACAAAGGAATCTTTTGAACGGGACAGCTGAGTCAACGTAAGGAAAGGAAGATCCACAGTAACAGAGGATTTTACCCAAAATAAAAGACAGATCGGTGACTCAAAAAGGCACTACTTCAGAGAGCCTTCGCCCATAACTCAGAGATCCCAGTACAGGCTAATACGATGGGGAACGCCAAGAGCAGTGCTATTTCCAAGGAGATCCTGGAGGACCTGAAGCTCAACACCAAGTTCACGGAGAACGAGTTGTGCCAGTGGTACGAGAACTTCCAGAAGCAGTGTCCCACCGGACGCATCTCGCCAGAGGAGTTCGAGACGATCTACGCGCGCTTCTTCCCCGATAGCGAAGCCAAGACCTACGCTCAGCATGTGTTCCGTTCATTCGACACCAACGAGGACGGCACTCTGGACTTCAAGGAATACATCATTGCACTGCACATGACCTCCAGTGGGAAGACGACGAGGAAGCTGGAGTGGGCCTTCTCACTGTTCGACGTGGACAAGAACGGATACATCACCAAGACAGAAGTGGAAGTCATCTGCCAGgcCATCTTTAAGCTAATCCCCAAGGAAGATCTGCCCAAGTTACCGGCCGACGAGAATACACCAGAGAAGAGAGCCAACAAACTGTGGGGATACTTTGAGAAACCAGACAACGaccggTTGGCAGAGGGAGAGTTCATCAAGGGGGTGACGGAGAACGAAAACGCCATGCGTCTCATCCACTACGAACCCATCACTGACTAGTCATCCCTtcttctttccctctttctccttcacacactatttcttcctctcctcctctttgtcATTGTATTCTAGcgttctgtctttctcttctgTGTAAATACTCTTGTATGGTGGTGTCTTAATTGTCTTCACTGTACCTTCTAAGAAAGTAGGGGTTTATGTTGGTTAAAGTATAAAGTATGAGTATGTCAAAGTAAAAGTATGTTAAagtatgtctgtctgtgcatgTATGCCTATTGGATTGAGGCTGTTTTATGAAGGTAGGTGTGATAAATATGAAGGTAGACGGCCACTATTGTAATTAGTGTTTGATGCAATATAAACACGACAGAAACATTGAGGCACAAGTATATTTTATTTGTTTGTATATTGATACAACATCCCTGCTAAATGCTGTTTTCCTATCAGATTGAAGTTACAATAGCTTTTTGGTACTGTGAGATGATTGTGAAAAAGTAATGGTGGTCTAGTGTTTTGCAGTGTCCTGAATACTCATGGACTTGATCACTTGGTGACCATTGCTCAGTCTTTACATTTCATTATTCTAAGAAGCTCTAAATGGTGTTGCTGTAGAAGGAAATTTGAAGTGTGTAAATGTGATAAATGATAACAGTTCAGACACAGGTATTTGGGAAAAGAAAAGATTGAACATCTGTAGAATAACAAACCTTTTTCTCCATTAGGAATTTGCATGGTTGTGAGGGTGGGTTTTAGATTTTATCCTGCAATTAGCTTATTGTTTTAATCAAAGAGTTATACGCTGCAAATGGTGGATTAAACCTTTTCTCA

Function

NR:

description
recoverin-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622887.2 True 1588 mRNA 0.43 4 19565879 19579511

Neighbor

gene id symbol gene type direction distance location
LOC110537095 LOC106576906 coding upstream 37960 19526163 ~ 19528660 (+)
LOC110537022 LOC106576929 coding upstream 84496 19444131 ~ 19481383 (+)
LOC110534362 LOC106575226 coding upstream 132248 19392737 ~ 19433631 (+)
LOC110512786 LOC105019084 coding upstream 218579 19307576 ~ 19347300 (+)
LOC110503718 LOC102193556 coding upstream 306805 19131905 ~ 19259074 (+)
LOC110537165 LOC106605824 coding downstream 18002 19597513 ~ 19599416 (+)
LOC110537142 LOC106576877 coding downstream 57923 19637434 ~ 19645326 (+)
LOC110537226 LOC106575133 coding downstream 97145 19676656 ~ 19683059 (+)
LOC118944064 NA coding downstream 118980 19698491 ~ 19699519 (+)
LOC110537243 LOC106576860 coding downstream 195918 19768270 ~ 19778335 (+)
G119883 NA non-coding upstream 3029 19552715 ~ 19562850 (+)
G119866 NA non-coding upstream 46202 19518941 ~ 19519677 (+)
G119795 NA non-coding upstream 59379 19504866 ~ 19506500 (+)
G119856 LOC106606119 non-coding upstream 71755 19492925 ~ 19494124 (+)
G119855 NA non-coding upstream 73240 19492421 ~ 19492639 (+)
G119909 NA non-coding downstream 1310 19580821 ~ 19582374 (+)
G119916 LOC106605822 non-coding downstream 12031 19591542 ~ 19595167 (+)
G119899 NA non-coding downstream 81396 19660907 ~ 19750224 (+)
G119893 NA non-coding downstream 104282 19683793 ~ 19685529 (+)
G119955 LOC106605829 non-coding downstream 130971 19710482 ~ 19713435 (+)
G119794 u2af2 other upstream 58541 19506651 ~ 19507338 (+)
G119245 stl2 other upstream 604414 18934673 ~ 18992769 (+)
G119160 NA other upstream 893559 18670513 ~ 18672320 (+)
G119952 nat14 other downstream 122588 19702099 ~ 19703788 (+)
G120059 grl1 other downstream 344561 19924072 ~ 19928477 (+)
casp2 LOC106605831 other downstream 439188 20018602 ~ 20030933 (+)

Expression


Co-expression Network