LOC100329212 (LOC100135813)


Basic Information

Item Value
gene id LOC100329212
gene name LOC100135813
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 20243430 ~ 20249298 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021623341.2
AGCACACAAAGGGGCGTGTCCATACAGGGTGGAAATAAATAGGTAGCCCAGCTCTGCCAGTCCCCACTCACACCCGAAAGTCGTAAGACAGGATTGAGGCATCTCACAAACGAGGACTAGACCAACTCAGGCAAAATGGTGAAAGTAGGTGTCAATGGATTCGGCCGTATCGGGCGTCTGGTGACCCGTGCTGCATTCCACTCCAAGAAGGGAGTTGAGATTGTTGCCATCAACGACCCCTTCATCGACCTGGACTACATGGTCTACATGTTCAAGTATGACTCCACCCACGGACGTTTCCACGGTGAGGTCAAGGCTGAGGGTGGCAAGCTGGTCATCGATGGACACAAAATCACTGTGTTCCACGAGAGAGACCCAGCTAACATCAAGTGGGGAGATGCTGGTGCCACCTATGTAGTTGAGTCAACAGGTGTTTTCACCACCATTGAGAAGGCCTCTaccCATCTGAAGGGAGGTGCCAAGAGGGTTGTCATCTCTGCTCCCAGCGCTGATGCACCCATGTTCGTCATGGGCGTCAACCACGAGAAGTACGAGAACTCCCTCAAGGTTGTCAGCAATGCGTCATGCACAACCAACTGCCTGGCTCCCCTGGCCAAGGTCATCCACGATAACTACCACATCATTGAGGGTCTGATGaGCACCGTTCACGCCGTCACCGCCACCCAGAAGACTGTTGATGGTCCTTCTGGAAAGCTGTGGAGGGATGGACGTGGTGCCAGCCAGAACATCATCCCTGCCTCCACCGGAGCAGCCAAGGCTGTCGGCAAGGTCATCCCCGAGCTGAACGGCAAGATCACTGGCATGGCCTTCCGTGTCCCCACCCCCAACGTCTCAGTGGTGGACCTGACCGTCCGTCTGGAGAAGCCTGCCAGCTACGACGCCATCAAGAAGGTTGTCAAGGCTGCCGCCGATGGACCCATGAAGGGAATTCTCGGCTACACGGAGCAACAGGTTGTCTCTTCAGACTTCAACGGCGACACCCACTCCTCCATCTTTGATGCCGGCGCTGGCATTGCTCTGAACGACCACTTCGTCAAGCTGGTCACATGgtatGACAATGAGTTTGGCTACAGCAACCGCGTCATTGACCTGATGGCTCACATGGCCACCAAGGAGTAAAGCAACCAACCAAACGCTACTGCGCTACGTCATGTGACCACATATTTCCCATTCGATTGGACTATCGCCCTTGCCATGAGAAAGTTACCCGCATGAAACAAATAACTAACAATCACAACtaatttatttttgtattgtaaAGCCCCTGTTCTGGTCTTGTGAAAGGTGAGATGGAATCTGGGTGTGAAGACATTTTCTCTGTTTGTTGCACTGAACCTGCTTCATTCAGAAGCGGAATAAAAGTCCTCTGTGAGTAAA

Function

NR:

description
glyceraldehyde 3-phosphate dehydrogenase

GO:

id name namespace
GO:0051402 neuron apoptotic process biological_process
GO:0006096 glycolytic process biological_process
GO:0035606 peptidyl-cysteine S-trans-nitrosylation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0050821 protein stabilization biological_process
GO:0005829 cytosol cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0050661 NADP binding molecular_function
GO:0035605 peptidyl-cysteine S-nitrosylase activity molecular_function
GO:0051287 NAD binding molecular_function
GO:0008017 microtubule binding molecular_function
GO:0004365 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity molecular_function

KEGG:

id description
K00134 GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021623341.2 True 1398 mRNA 0.53 11 20243430 20249298

Neighbor

gene id symbol gene type direction distance location
cnp-1-2 cnp-1-2 coding upstream 11215 20227621 ~ 20232215 (+)
LOC110534400 ncapd2 coding upstream 14823 20202143 ~ 20228607 (+)
LOC118944184 NA coding upstream 34279 20208863 ~ 20209151 (+)
LOC118944180 NA coding upstream 37398 20205740 ~ 20206032 (+)
LOC118944182 NA coding upstream 38300 20204830 ~ 20205130 (+)
opn9 LOC106576962 coding downstream 991 20250289 ~ 20259650 (+)
LOC110537377 LOC106576644 coding downstream 10517 20259815 ~ 20297138 (+)
LOC110509548 LOC106575195 coding downstream 49188 20298486 ~ 20310775 (+)
LOC110509528 tnr1a coding downstream 77080 20326378 ~ 20337673 (+)
plekhg6 LOC106605732 coding downstream 88954 20338252 ~ 20353846 (+)
G120184 NA non-coding upstream 31059 20211456 ~ 20212371 (+)
LOC110537348 LOC106575899 non-coding upstream 58016 20179254 ~ 20185414 (+)
G120213 NA non-coding upstream 68943 20173740 ~ 20174487 (+)
G120212 NA non-coding upstream 70985 20172049 ~ 20172445 (+)
G120238 NA non-coding downstream 19200 20268498 ~ 20270723 (+)
G120254 NA non-coding downstream 63102 20312400 ~ 20312765 (+)
G120188 NA non-coding downstream 75804 20325102 ~ 20326230 (+)
G120263 NA non-coding downstream 91676 20340974 ~ 20341290 (+)
G120268 LOC106605731 non-coding downstream 105440 20354738 ~ 20355147 (+)
G120211 NA other upstream 72049 20171082 ~ 20171381 (+)
zyx zyx other upstream 86320 20145710 ~ 20165887 (+)
casp2 LOC106605831 other upstream 218447 20018602 ~ 20030933 (+)
G120059 grl1 other upstream 314953 19924072 ~ 19928477 (+)
G120259 NA other downstream 70441 20319739 ~ 20320256 (+)
G120169 NA other downstream 158564 20407862 ~ 20419128 (+)
erfl3 LOC106576393 other downstream 650976 20900204 ~ 20977481 (+)
LOC110509768 LOC106576258 other downstream 742456 20990131 ~ 21058856 (+)
LOC118938333 LOC106605563 other downstream 1292799 21532987 ~ 21547038 (+)

Expression


Co-expression Network