LOC110538859 (LOC106578507)


Basic Information

Item Value
gene id LOC110538859
gene name LOC106578507
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24480265 ~ 24492482 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943239.1
TGCTCTTGGGGGCGGGTGACAGATGACGATCGACTTCACTGTACAATACTTTGTGAAAGCCCGCTCTCCGCTCTCCCTGGTTGACAAACACATTTGTGTTGAAGAAGAACCATGCTTCGAGTTGTGTTATCCCGAACTTTTCCTCGGATCTCTGGCATTTCCAATTGTCAGTATTCGGCGGCCGCCATCCCGGTTCCAAGCGCACAGCCCGAAGTCCATTATAACAAGCTGTTCATCAATAACGAGTGGCAGGATGCCATCAGCAAGAGGTCCTTCCCCACCATCAACCCAGCCACAGGAGAGGTCATCTGTCAGGTGGCTGAGGCAGACAAGGCAGATGTGGACAAGGCTGTGAAGGCTGCCAGGGAGGCCTTCCGGTTTGGGTCACCATGGCGACGCATGGACGCGTCGGACCGCGGGCTGCTCCTGAGCCGGCTGGCAGACGCAATCGAGAGGGACACAGCCTACCTAGCGGAACTGGAGACCCTGGACAATGGGAAGCCCTATGCCGTATCCTACAGTGTGGACGTGCCCATGGTGGTCAAGTGCCTCAGGTACTGTGCGGGCTGGGCAGATAAGTGGGAGGGGAAGACCATTCCCATCGATGGAGACTTCTTCTGCTACACCCGTCATGAGCCCATCGGTGTGTGTGGCCAGATCATCCCGTGGAACTTCCCTCTGCTGATGCAGGCATGGAAGCTGGGGCCAGCTCTGGCTACAGGCAACACTGTGGTGATGAAGGTGGCTGAGCAGACCCCCCTCACTGCCCTGTATGTGGCCAGTCTCATCAAGGAGgttGGTTTCCCTCCAGGTGTGGTGAACATCCTGCCTGGTATGGGTCCATCTGCTGGTTCTGCCATCGCCTCCCACATGGATGTGGATAAGGTGGCTTTCACAGGATCTACTGAGGTAGGTCACCTGATCCAGCAGGCATCTGGCTCCAGCAACCTGAAGAAGGTCACTCTGGAGCTGGGAGGAAAGAGCCCCAACATAATCATGTCTGATGCCAACAtgGCGGAGGCGGTGGAACAGTCCCACTTTGCCCTGTTCTTTAACCAGGGCCAGTGCTGCTGTGCCGGCTCCCGTACATACGTGCAGGACACCATCTATGATGAGTTTATGGAGCGCAGTGTGGAGCGGGCCAAGAGCAGGGTGGTGGGAGACCCCTTCAACATGAAGACTGAGCAGGGACCGCAGGTGGATGAGGAACAGTTCAAGAAGATTCTGGGCTACATCAGCAGTGGGAAGCGTGAGGGGGCCAAGCTGATGTGCGGGGGAGGAGTGGCTGCAGACCGTGGCTACTTCATCCAACCAACCATCTTTGGAGATGTCCAGGACGGCATGACCATCGCCCGTGAGGAGATCTTTGGGCCGGTGATGCAGATCCTGAAGTTTAAGACTCTGGAGGAGGTGGTTGAGAGAGCCAACGACACAAAGTACGGCCTGGCAGCTGCTGTCTTCACCAAAGACATCGACAAGGCCCACTACATCTCTAGCGGAATTCGCGCTGGCACTGTCTGGATTAACTGCTATAATGTGTTTGGAGCACAAGCCCCCTTCGGTGGCTACAAATATTCTGGTAACGGTCGTGAGCTGGGAGAGTATGGCCTGGACAACTACACTGAAGTGAAAACGGTAACAATCAAGGTCCCTCAGAAAAACTCGTAAAGACGTCAGAACTCTGCCTCCAATCAAGGAAACTAACTGACCATAGGGAAGGCTCTATGGAACTAAATCAGCCTTTATTGTGTTTATCACAGAGTCCTCAGTTATTCAGTTGGACTTTAGTGTTACTTAGCCTCTGTACTCATCTCTAACTTCATGTAAAGAATTTCCAAACAAGATGAGAAAACAATTACAGGCATGGTGCTGTTAGTTTACACCCAGCTTGTTGTACAGCCTTGTCAAACTTCAACAGCTTATTTTAAGCACTTCATAGAGCATGCCATAATATTTCATAATACTTATTTCAGTCATTATGTTCATcctgttttaatatggtgaatCCCTGCTACAATGCAGAGTAGTTTTGTACTCTTGTAGAGTGAAAGTGTGAACTTTGAAAGGATTTTGGATAATAAATGCACTTGATACTCGC
>XR_005035966.1
TGCTCTTGGGGGCGGGTGACAGATGACGATCGACTTCACTGTACAATACTTTGTGAAAGCCCGCTCTCCGCTCTCCCTGGTTGACAAACACATTTGTGTTGAAGAAGAACCATGCTTCGAGTTGTGTTATCCCGAACTTTTCCTCGGATCTCTGGCATTTCCAATTGTCAGTATTCGGCGGCCGCCATCCCGGTTCCAAGCGCACAGCCCGAAGTCCATTATAACAAGCTGTTCATCAATAACGAGTGGCAGGATGCCATCAGCAAGAGGTCCTTCCCCACCATCAACCCAGCCACAGGAGAGGTCATCTGTCAGGTGGCTGAGGCAGACAAGGCAGATGTGGACAAGGCTGTGAAGGCTGCCAGGGAGGCCTTCCGGTTTGGGTCACCATGGCGACGCATGGACGCGTCGGACCGCGGGCTGCTCCTGAGCCGGCTGGCAGACGCAATCGAGAGGGACACAGCCTACCTAGCGGAACTGGAGACCCTGGACAATGGGAAGCCCTATGCCGTATCCTACAGTGTGGACGTGCCCATGGTGGTCAAGTGCCTCAGGTACTGTGCGGGCTGGGCAGATAAGTGGGAGGGGAAGACCATTCCCATCGATGGAGACTTCTTCTGCTACACCCGTCATGAGCCCATCGGTGTGTGTGGCCAGATCATCCCGTGGAACTTCCCTCTGCTGATGCAGGCATGGAAGCTGGGGCCAGCTCTGGCTACAGGCAACACTGTGGTGATGAAGGTGGCTGAGCAGACCCCCCTCACTGCCCTGTATGTGGCCAGTCTCATCAAGGAGgttGGTTTCCCTCCAGGTGTGGTGAACATCCTGCCTGGTATGGGTCCATCTGCTGGTTCTGCCATCGCCTCCCACATGGATGTGGATAAGGTGGCTTTCACAGGATCTACTGAGGTAGGTCACCTGATCCAGCAGGCATCTGGCTCCAGCAACCTGAAGAAGGTCACTCTGGAGCTGGGAGGAAAGAGCCCCAACATAATCATGTCTGATGCCAACAtgGCGGAGGCGGTGGAACAGTCCCACTTTGCCCTGTTCTTTAACCAGGGCCAGTGCTGCTGTGCCGGCTCCCGTACATACGTGCAGGACACCATCTATGATGAGTTTATGGAGCGCAGTGTGGAGCGGGCCAAGAGCAGGGTGGTGGGAGACCCCTTCAACATGAAGACTGAGCAGGGACCGCAGGTGGATGAGGAACAGTTCAAGAAGATTCTGGGCTACATCAGCAGTGGGAAGCGTGAGGGGGCCAAGCTGATGTGCGGGGGAGGAGTGGCTGCAGACCGTGGCTACTTCATCCAACCAACCATCTTTGGAGATGTCCAGGACGGCATGACCATCGCCCGTGAGGAGATCTTTGGGCCGGTGATGCAGATCCTGAAGTTTAAGACTCTGGAGGAGGTGGTTGAGAGAGCCAACGACACAAAGTACGGCCTGGCAGCTGCTGTCTTCACCAAAGACATCGACAAGGCCCACTACATCTCTAGCGGAATTCGCGCTGGCACTGTCTGGATTAACTGCTATAATGTGTTTGGAGCACAAGCCCCCTTCGGTGGCTACAAATATTCTGGTAACGGTCGTGAGCTGGGAGAGTATGGCCTGGACAACTACACTGAAGTGAAAACGGTAACAATCAAGGTCCCTCAGAAAAACTCGTAAAGACGTCAGAACTCTGCCTCCAATCAAGGAAACTAACTGACCATAGGGAAGGCTCTATGGAACTAAATCAGCCTTTATTGTGTTTATCACAGAGTCCTCAGTTATTCAGTTGGACtttaatatggtgaatCCCTGCTACAATGCAGAGTAGTTTTGTACTCTTGTAGAGTGAAAGTGTGAACTTTGAAAGGATTTTGGATAATAAATGCACTTGATACTCGC

Function

NR:

description
aldehyde dehydrogenase, mitochondrial

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K00128 ALDH; aldehyde dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943239.1 False 2098 mRNA 0.52 13 24480265 24492482
XR_005035966.1 True 1890 mRNA 0.54 14 24480265 24492482

Neighbor

gene id symbol gene type direction distance location
LOC110538767 LOC106605667 coding downstream 227164 24249862 ~ 24253101 (-)
LOC110538717 LOC106578554 coding downstream 296093 24178523 ~ 24184172 (-)
LOC110538705 LOC106577653 coding downstream 307429 24144519 ~ 24172836 (-)
LOC118938710 LOC106605635 coding downstream 340597 24138846 ~ 24139668 (-)
LOC110538681 LOC106605635 coding downstream 348662 24124948 ~ 24131603 (-)
LOC100301652 LOC100301652 coding upstream 11324 24503806 ~ 24504593 (-)
LOC110538887 LOC106605647 coding upstream 38942 24531424 ~ 24540898 (-)
LOC110538978 LOC106605653 coding upstream 91911 24584393 ~ 24601385 (-)
LOC110538828 grik2 coding upstream 370424 24862906 ~ 25110583 (-)
LOC110533704 cep162 coding upstream 924958 25417440 ~ 25427699 (-)
G125126 NA non-coding downstream 7910 24472013 ~ 24472355 (-)
G125123 NA non-coding downstream 10281 24469753 ~ 24469984 (-)
G125083 NA non-coding downstream 59361 24394855 ~ 24420904 (-)
G125101 NA non-coding downstream 70461 24404413 ~ 24409804 (-)
G125078 NA non-coding downstream 97354 24381406 ~ 24382911 (-)
G125192 LOC106605651 non-coding upstream 77431 24569913 ~ 24570690 (-)
G125220 NA non-coding upstream 129921 24622403 ~ 24622633 (-)
G125230 NA non-coding upstream 141284 24633766 ~ 24685283 (-)
G125244 NA non-coding upstream 156081 24648563 ~ 24650144 (-)
G125273 NA non-coding upstream 214992 24707474 ~ 24707709 (-)
G125043 NA other downstream 155429 24324580 ~ 24324836 (-)
G125003 NA other downstream 210129 24269226 ~ 24270136 (-)
G124840 NA other downstream 575588 23903839 ~ 23904677 (-)
LOC110538355 LOC106577931 other downstream 1198467 23279116 ~ 23281851 (-)
G125305 NA other upstream 282738 24775220 ~ 24776627 (-)
G127083 NA other upstream 2069132 26561614 ~ 26562127 (-)
LOC110539285 LOC106579350 other upstream 2158894 26641958 ~ 26675649 (-)
LOC110485245 ubr5 other upstream 2778778 27231538 ~ 27278158 (-)

Expression


Co-expression Network