LOC110538887 (LOC106605647)


Basic Information

Item Value
gene id LOC110538887
gene name LOC106605647
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24531424 ~ 24540898 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625867.2
gacaactgggaattcgAGAAAAAAAAACGTCAGTGATCTTAAGGTCGGAATGACCGAGTTCGAGAAGGAGGCCCGAGTTCCCGGaatggaattccgagttggatgaccgttttCTCAGGCGGAGTTcgtttttccgagttcccagttgtcatgaacgcactgaagtcggaagtctgaGATTTCTGGGTTGGCTGTTGTTTGAACACTGCATCGTAAGAAAACTGGAAACGCGGGtaaatacgaggtcaaatcatgaagTCAGTGATATTCTGGTAGGAAATTTGGAGCCCTAGAAAGATGTCCGAGTTTCAgatttggaattccgagttggatgacgtTAAAAACGATTTTCACAGTTGGAGCtatttttttccgagttcccaatTATCTTGAACCCACGGAAGTCGGAGGTTTCCGAGGTCTGAGTACCAGTTGTTTTGAACTGGGCATATCTGCTGCGAACTAGTCATTGGGAAGGTCGTGCCAAACATAAATGTAGCTTTTACCACATGACAAAAACGTGGGTCACTAAAACGCCTTAAAATATGATGTGGTTACTTCAAGTATGTGCCTTTTGGATTCCGGGATTAGATTTTACAGTAGCGCGATAGCGTGCGCGTTCAGTTGAATAAAATCGGAAGCATCAAGTAACATTAGCTGACGTTAACTTCTAGCTAAATTCACAGAATAACTAGGTAAACATGAGTCCTGCTACAGGACTTCCTGCTTCTTCGGGATCCCCTGGAAGTAGCACACCTTTCTCCATAACAGGACATATCCAGCAAGTCTATAGCCATGTCAAAATAGAGAATTTGGTTGCAGGACTCAGTGGAGGAGTCGTGTCAACACTGGTGCTTCACCCTCTTGACCTAGTCAAAATCAGGTTTGCAGTGAGTGATGGACTGGACCTGAGACCTAAATATAATGGCATTATTCATTGTTTGAGAAATGTGTGGCAGCAGGAGGGGGTCCGAGGACTCTACCAAGGAGTCACCCCCAACATCTGGGGTGCTGGGGCATCATGGGGCCTCTACTTCTTCTTTTACAATGCCATCAAGGAGTACACTAAGGAAGGGCGTCAGTCTGAACTGAGTGCCACAGAACACCTGCTGTCAGCCGCCCAAGCAGgTGTATTGACTCTCACCCTAACCAACCCTATCTGGGTGACTAAGACTCGCCTGGTGCTGCAGTATAACGCTGATCCCACCAGGAAACAGTATAAAGGGATGATGGATGCACTGGTGAAGATCTACCGGCATGAGGGGATACCTGGACTGTACAGGGGGTATGTTCCTGGTTTATTTGGCACGTCACACGGGGCATTGCAGTTCATGGCCTATGAGGAGTTGAAGAGAGACTACAACAAATACAAGAAAATGCCTTCAGAAGCTAAACTGAATGCATTGGAATACATCACAATGGCAGCTCTATCCAAAATATTTGCTGTGGCTACCACATACCCTTACCAGGTGGTGCGGGCTCGCCTGCAGGACCAGCATAATAAGTACAATGGAGTCCTGGATGTGGTCAGGAGGACATGGAGGAATGAGGGAGCTGTAGGGTTCTATAAAGGCATGGTGCCCAACCTGATCCGTGTCACCCCAGCCTGCTGTATCACCTTCGTGGTCTATGAGAACGTGTCTCGCTTCCTGATGGGCCAGAAGTGAGGAGGACTAAAAAGACAGCCATGGAAGGACCACAAATAGGAAGGGACTCAGACAGTGTATGTGGTGCTAGATAAGATAAGCCATGAACTGAAGTCTCCAGAACTGTCACAGCAGGTAACTGGACAACTGGAGCAGACATGTCACCTGGATACACCTCTGGCAGCCGAGTCAAAACATGATGTTGACAATGCTGATAATtaaagactggtctctgtctcttccttggATGCATCAGAGAAGAACAGACCTCACTGGAGGTACTATACAGGACGTGGGTGTGAAACATCAAAGCAAAATGAACCATTTCAATGCTGCTGGCTGTGATgtgagtactgtgtgtgtgtgttaaacgaGCATACCTGCTATTTTCAGGGTACAAATGTACGCCcaatgtgtttttatttaatgTATTGGTGTCATACTGTAGTGCATATAATTATGTCATAGGAAATTATCACAGATGACTGATTGCACCGTTTTGAAATAATGTTAATTTCAGAAGTCTTAATCTGAAATATCAGTGTTGAATTGGCATTAGTTCATTTTCAGATAAAATGTTCTACTAAAGTTTAATGCTTTATGTTGCTTTTTCATTTCAGATCATTTTACATTTTGCTGTGTTCACTTGTCATTTCAAAACGATATGAACACATTCATTTTTTAATGAATTCACCTGGTCATGCATAAACCAATGTTCAACAAAACTTCTCTGATAGTAAAACATTTGTTAGCTTTTTGTAGCTTCAGATTACATTTAACAGCTGTCCTGTGTTCACTTTTCACTTGGAAAAAGAGATTAACACCTGCATTTCTTTATTCATTTACCTGGTAATGCATAAACCAATGTTCAAATGATGTTCTTCTCTGATAGGAAAACATTTGTTAGCTTTTTTTGCTTCAGATAAAATTTTAAAGCTGTGTCGTGTTAACTTGTCACTTGAAAAATATATCTACCCATGCATTTCTTTATGAATTCACCAATTTTCAAAAAACATATATCCGATAGGAAAACATGTTATAGTGTAATGAGTAACACAATGCATGATTCATATAATATATGACTTAATTGACAGTAATTCAAAATCTTGCCTTATTAAACAGGAATGGGACTAATGAGGAATACATCTAATTTCAGGTGGCCAATAAACTAGACCCTAC
>XR_005035978.1
gacaactgggaattcgAGAAAAAAAAACGTCAGTGATCTTAAGGTCGGAATGACCGAGTTCGAGAAGGAGGCCCGAGTTCCCGGaatggaattccgagttggatgaccgttttCTCAGGCGGAGTTcgtttttccgagttcccagttgtcatgaacgcactgaagtcggaagtctgaGATTTCTGGGTTGGCTGTTGTTTGAACACTGCATCGTAAGAAAACTGGAAACGCGGGtaaatacgaggtcaaatcatgaagTCAGTGATATTCTGGTAGGAAATTTGGAGCCCTAGAAAGATGTCCGAGTTTCAgatttggaattccgagttggatgacgtTAAAAACGATTTTCACAGTTGGAGCtatttttttccgagttcccaatTATCTTGAACCCACGGAAGTCGGAGGTTTCCGAGGTCTGAGTACCAGTTGTTTTGAACTGGGCATATCTGCTGCGAACTAGTCATTGGGAAGGTCGTGCCAAACATAAATGTAGCTTTTACCACATGACAAAAACGTGGGTCACTAAAACGCCTTAAAATATGATGTGGTTACTTCAAGTATGTGCCTTTTGGATTCCGGGATTAGATTTTACAGTAGCGCGATAGCGTGCGCGTTCAGTTGAATAAAATCGGAAGCATCAAGTAACATTAGCTGACGTTAACTTCTAGCTAAATTCACAGAATAACTAGGTAAACATGAGTCCTGCTACAGGACTTCCTGCTTCTTCGGGATCCCCTGGAAGTAGCACACCTTTCTCCATAACAGGACATATCCAGCAAGTCTATAGCCATGTCAAAATAGAGAATTTGGTTGCAGGACTCAGTGGAGGAGTCGTGTCAACACTGGTGCTTCACCCTCTTGACCTAGTCAAAATCAGGTTTGCAGTGAGTGATGGACTGGACCTGAGACCTAAATATAATGGCATTATTCATTGTTTGAGAAATGTGTGGCAGCAGGAGGGGGTCCGAGGACTCTACCAAGGAGTCACCCCCAACATCTGGGGTGCTGGGGCATCATGGGGCCTCTACTTCTTCTTTTACAATGCCATCAAGGAGTACACTAAGGAAGGGCGTCAGTCTGAACTGAGTGCCACAGAACACCTGCTGTCAGCCGCCCAAGCAGgTGTATTGACTCTCACCCTAACCAACCCTATCTGGGTGACTAAGACTCGCCTGGTGCTGCAGTATAACGCTGATCCCACCAGGAAACAGTATAAAGGGATGATGGATGCACTGGTGAAGATCTACCGGCATGAGGGGATACCTGGACTGTACAGGGGGTATGTTCCTGGTTTATTTGGCACGTCACACGGGGCATTGCAGTTCATGGCCTATGAGGAGTTGAAGAGAGACTACAACAAATACAAGAAAATGCCTTCAGAAGCTAAACTGAATGCATTGGAATACATCACAATGGCAGCTCTATCCAAAATATTTGCTGTGGCTACCACATACCCTTACCAGGTGGTGCGGGCTCGCCTGCAGGACCAGCATAATAAGTACAATGGAGTCCTGGATGTGGTCAGGAGGACATGGAGGAATGAGGGAGCTGTAGGGTTCTATAAAGGCATGGTGCCCAACCTGATCCGTGTCACCCCAGCCTGCTGTATCACCTTCGTGGTCTATGAGAACGTGTCTCGCTTCCTGATGGGCCAGAAGTGAGGAGGACTAAAAAGACAGCCATGGAAGGACCACAAATAGGAAGGGACTCAGACAGTGTATGTGGTGCTAGATAAGATAAGCCATGAACTGAAGTCTCCAGAACTGTCACAGCAGGTAACTGGACAACTGGAGCAGACATGTCACCTGGATACACCTCTGGCAGCCGAGTCAAAACATGATGTTGACAATGCTGATAATtaaagactggtctctgtctcttccttggATGCATCAGAGAAGAACAGACCTCACTGGAGGTACTATACAGGACGTGGGTGTGAAACATCAAAGCAAAATGAACCATTTCAATGCTGCTGGCTGTGATATCATTTTACATTTTGCTGTGTTCACTTGTCATTTCAAAACGATATGAACACATTCATTTTTTAATGAATTCACCTGGTCATGCATAAACCAATGTTCAACAAAACTTCTCTGATAGTAAAACATTTGTTAGCTTTTTGTAGCTTCAGATTACATTTAACAGCTGTCCTGTGTTCACTTTTCACTTGGAAAAAGAGATTAACACCTGCATTTCTTTATTCATTTACCTGGTAATGCATAAACCAATGTTCAAATGATGTTCTTCTCTGATAGGAAAACATTTGTTAGCTTTTTTTGCTTCAGATAAAATTTTAAAGCTGTGTCGTGTTAACTTGTCACTTGAAAAATATATCTACCCATGCATTTCTTTATGAATTCACCAATTTTCAAAAAACATATATCCGATAGGAAAACATGTTATAGTGTAATGAGTAACACAATGCATGATTCATATAATATATGACTTAATTGACAGTAATTCAAAATCTTGCCTTATTAAACAGGAATGGGACTAATGAGGAATACATCTAATTTCAGGTGGCCAATAAACTAGACCCTAC
>TU144590
agacacaaaacaaaacttaagaacaagaagcatagaaatagccaCATAGAACAGAtgtaccacttcttagacttgctttcaatgattGACATACCTATAACTCAAATTTCTATGTGAATCTGGTCATTTGCTTTTATTGAAGttttacagtatgtactgtagttgcaTACAATTTGATTGTATGTCTTATAGACTACCACTAGGGGGCAGTAGATCTATTTTACATTTGAGCAATTTAgcacactcttatccagagggacatacatttagtgcattcatcttaagatagctaggtgagacaacaacatttcagtcagtggtggaaaaagtaccaaattgtcatacttcagtaaaagtaaagatacattaatAGGGAACAACTCAAGTGAAAGTCGCccattaaaatactacttgagtaaaagtttaagtatctggttttaaatatacttaagtatcaaaagtaaatgtaattgctaaaatatacttaagtataaaaagcAAAAGTATCagtcatttcaaattccttatattaggcAATCCAGACTGCACCAAACCAGTACAGCTACCCCAAAAACTACTGAAGTAGTatgttaaagtatttttacttaactaCTTTACACAGCTGTTCACAGTCATAGTAATAAGTACATTTTTTTCTCAATAAAGTAGTTAGTAGTGTTAGTAGGAGTAGATTGTGCACAGGGCTGATCAATGTCAGTCCTCTAAGGCCAAAACACTTCTGGTTGTCATCCTCTACTTCTAATAAGGGActaattcagacctgggacaccagttgagtgcaattaactaccaggtagaaacaaaaacagaggcGTTTCGGACCTCCAGGACTGGAATTGAACAGCCTGGGTAGTCGATTGGATAAATTGTCTTTCAAGATATTAGTGTCTTTAAATCAGCTATAAGTATTTTTCAATATTATAAATACCATGATCATATCAATTGGATTTGGAAGATAATATATAACATTTCAtttcaaagtgtatttgtcaggTACAGATAATGACCCCTGTGTTTAATCCTCCAGGGGTATGTTCCTGGTTTATTTGGCACGTCACACGGGGCATTGCAGTTCATGGCCTATGAGGAGTTGAAGAGAGACTACAACAAATACAAGAAAATGCCTTCAGAAGCTAAACTGAATGCATTGGAATACATCACAATGGCAGCTCTATCCAAAATATTTGCTGTGGCTACCACATACCCTTACCAGGTGGTGCGGGCTCGCCTGCAGGACCAGCATAATAAGTACAATGGAGTCCTGGATGTGGTCAGGAGGACATGGAGGAATGAGGGAGCTGTAGGGTTCTATAAAGGCATGGTGCCCAACCTGATCCGTGTCACCCCAGCCTGCTGTATCACCTTCGTGGTCTATGAGAACGTGTCTCGCTTCCTGATGGGCCAGAAGTGAGGAGGACTAAAAAGACAGCCATGGAAGGACCACAAATAGGAAGGGACTCAGACAGTGTATGTGGTGCTAGATAAGATAAGCCATGAACTGAAGTCTCCAGAACTGTCACAGCAGGTAACTGGACAACTGGAGCAGACATGTCACCTGGATACACCTCTGGCAGCCGAGTCAAAACATGATGTTGACAATGCTGATAATtaaagactggtctctgtctcttccttggATGCATCAGAGAAGAACAGACCTCACTGGAGGTACTATACAGGACGTGGGTGTGAAACATCAAAGCAAAATGAACCATTTCAATGCTGCTGGCTGTGATgtgagtactgtgtgtgtgtgttaaacgaGCATACCTGCTATTTTCAGGGTACAAATGTACGCCcaatgtgtttttatttaatgTATTGGTGTCATACTGTAGTGCATATAATTATGTCATAGGAAATTATCACAGATGACTGATTGCACCGTTTTGAAATAATGTTAATTTCAGAAGTCTTAATCTGAAATATCAGTGTTGAATTGGCATTAGTTCATTTTCAGATAAAATGTTCTACTAAAGTTTAATGCTTTATGTTGCTTTTTCATTTCAGATCATTTTACATTTTGCTGTGTTCACTTGTCATTTCAAAACGATATGAACACATTCATTTTTTAATGAATTCACCTGGTCATGCATAAACCAATGTTCAACAAAACTTCTCTGATAGTAAAACATTTGTTAGCTTTTTGTAGCTTCAGATTACATTTAACAGCTGTCCTGTGTTCACTTTTCACTTGGAAAAAGAGATTAACACCTGCATTTCTTTATTCATTTACCTGGTAATGCATAAACCAATGTTCAAATGATGTTCTTCTCTGATAGGAAAACATTTGTTAGCTTTTTTTGCTTCAGATAAAATTTTAAAGCTGTG

Function

NR:

description
mitochondrial folate transporter/carrier-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625867.2 False 2825 mRNA 0.42 7 24531424 24540898
XR_005035978.1 False 2551 mRNA 0.43 8 24531424 24540898
TU144590 True 2352 TUCP 0.39 3 24531662 24534529

Neighbor

gene id symbol gene type direction distance location
LOC100301652 LOC100301652 coding downstream 26831 24503806 ~ 24504593 (-)
LOC110538859 LOC106578507 coding downstream 38942 24480265 ~ 24492482 (-)
LOC110538767 LOC106605667 coding downstream 278323 24249862 ~ 24253101 (-)
LOC110538717 LOC106578554 coding downstream 347252 24178523 ~ 24184172 (-)
LOC110538705 LOC106577653 coding downstream 358588 24144519 ~ 24172836 (-)
LOC110538978 LOC106605653 coding upstream 43495 24584393 ~ 24601385 (-)
LOC110538828 grik2 coding upstream 322008 24862906 ~ 25110583 (-)
LOC110533704 cep162 coding upstream 876542 25417440 ~ 25427699 (-)
LOC110539072 cep162 coding upstream 888085 25428983 ~ 25443516 (-)
si:ch211-198c19.1 LOC106605502 coding upstream 918656 25459554 ~ 25460882 (-)
G125126 NA non-coding downstream 59069 24472013 ~ 24472355 (-)
G125123 NA non-coding downstream 61440 24469753 ~ 24469984 (-)
G125083 NA non-coding downstream 110520 24394855 ~ 24420904 (-)
G125101 NA non-coding downstream 121620 24404413 ~ 24409804 (-)
G125078 NA non-coding downstream 148513 24381406 ~ 24382911 (-)
G125192 LOC106605651 non-coding upstream 29015 24569913 ~ 24570690 (-)
G125220 NA non-coding upstream 81505 24622403 ~ 24622633 (-)
G125230 NA non-coding upstream 92868 24633766 ~ 24685283 (-)
G125244 NA non-coding upstream 107665 24648563 ~ 24650144 (-)
G125273 NA non-coding upstream 166576 24707474 ~ 24707709 (-)
G125043 NA other downstream 206588 24324580 ~ 24324836 (-)
G125003 NA other downstream 261288 24269226 ~ 24270136 (-)
G124840 NA other downstream 626747 23903839 ~ 23904677 (-)
LOC110538355 LOC106577931 other downstream 1249626 23279116 ~ 23281851 (-)
G125305 NA other upstream 234322 24775220 ~ 24776627 (-)
G127083 NA other upstream 2020716 26561614 ~ 26562127 (-)
LOC110539285 LOC106579350 other upstream 2110478 26641958 ~ 26675649 (-)
LOC110485245 ubr5 other upstream 2730362 27231538 ~ 27278158 (-)
G129250 NA other upstream 3225259 27766157 ~ 27766532 (-)

Expression


Co-expression Network