LOC110533704 (cep162)


Basic Information

Item Value
gene id LOC110533704
gene name cep162
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 25417440 ~ 25427699 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110533704
aCATTCTTTGATATGTAATTAGTTAAAACCTGCATTTCCCCCTAGCAGGGATgttttgcatgtttcagtgcaaaAATAAAAGTGTCACCTTTCTGGGCCCTCAGCAGTTTGCATCCCTGGTATTGTGTGTGTCCATACCTTGATGACGATAGCAGTCAAACATTTTTGCATTCTTGGTGCCTATTTTGTTTGTGCTATTAATAATTAGGCCAATAGTATGGCCTTCAATACACGTTGAAGTGCTAGCAACTATCCATTATAAAGACTCTAACCATGTGttacccctctgtctgtcagagtgtgCCCAGGGAGGAGGGTACGTctggggaggtggaggagagccCCCTAGTGTCCAGGCTGAGACTGCAGCTAgcccagagggggagagagctccACACCAGAGACGAAGAGCTACTGCTGCAGCACGACACAGAGGTCAGCTCACTGAGACAGGAGAACTACCTCCTGCAGAGCAAGCTGCACAGTACAGAGGAGGCCAACAGCAGGAAGAAGGGCCGGTTGGGTCGCGGTCTGGACGGGCCCTTGGACCCCCTCACTGAGGGCAAACTCAGACTGATAGAGAAAGAGGTGAAGAAACAGGAGACCATCGTCCAGGGATACCAGCAGGAGAATGAGAAGTTGTACCTGCAGATGAAGGCTCTTCAGGCTCAGAGTAAACTCAATGAAGAGGCCATGTTCGCAGAGAACCAGAGGCTGCTAAACGAACTGGCCCTTACCAAAGAGACTGGTGGAGGAGACCCACAGGCTGTGGAGGTGGAACTTCAAAtgatgaggaaagagagagacctgGACAAAGCGCAGGTCGTCTACACCTCAGGGGATAAGAGCTTTGAGCTGCAAGTGGCAGAGGACCGGCATAAGGAGGTGGTGTGTGTTCTGAAGAAGAGGCTCCAGTGGTATGCTGAGAACCAGGAGCTTCTGGACAGAGACTCTGCCAGACTGAGGGCTGCCaccgcagacacacacaaacgcacagagCAGGTGGAAAAGCTGAAGatggaggtggggaagagagccAATCAGAATAAGACTAAAGAGAGAGCTGGAGACGCTAAGAGGATACAGGACCTAGAACGACAGGTGAGTCAGAGATGGAGAAGACTCAGACAGAGGAACCCTAACTCCCTCCCAGCGCTTATCTACGCTGCAGCCAACGCACCTGcagtggaggaggatggaggggccaagagctccccgcccactcagaccagggccctattgGAGCGGCACATCCAGAGGCTGGAGGCGGAGCTAGAGAGCCATGACGACGAGGCCAAACGCAGCCTCCGAGCCATGGAACAGCAGTACCAGCGGATTAAGCTCCAGGATGAGCAGCAGATCAGTGATCTGGAGCAGCAGTTCACCCAGAAACACCCGGTCCAGACCGGGTCACCATGGGGTCTGGCAGGCCCAGGTCTGCTCCCTGCAGCAGGAACTGGAGCTCCTGAAGGAGAACCATCAGACTCGTCCCAGCACCAAGCAGAGACAGCCCTGGGGGTCCGGATAGAGAGACTCAACCAGGGGCTGTCAGCCAAGACCCACAGCATCCAGGAGCTGTCAGCCAAGACCCGCAGCGTCCAGGAGCGGTCAGCCAAGACCCGCAGCGTCCAGGAGCTGTCAGCCAAGACCCGCAGCGTCCAGGAGCTGTCAGCCAAGACCCGCAGCGTCCAGGAGCTGTCAGCCAAGACCCGCAGCGTCCAGGAGCTGTCAGCCAAGACCCGCAGCGTCCAGGAGCTGTCAGCCAAGACCCGCAGCGTCCAGGAGCTGTCAGCCAAGACCCGCAGCGTCCAGGAGCTGTCAGCCAAGACCCGCAGCGTCCAGGAGCTGTCAGCCAAGACCCGCAGCGTCCAGGAGCTGTCAGCCAAGACCCGCAGCGTCCAGGAGCTGTCAGCCAAGACCCGCAGCGTCCAGGAGCTATCAGCCAAGACCCGCAGCGTCCAGGAGCTGTCAGCCAAGACCCGCAGCGTCCAGGAGCTGTCAGCCAAGACCCGCAGCGTCCAGGAGCTGTCAGCCAAGACCCGCAGCGTCCAGGAGCTGAGCCGCACCGTGGAGAGACtccagagggagaggaagaccaTGCTGTGTGGCCCTGGCCCCAGATCAGAGGGCCGTGTTGGGCCTGGGGAGGGCAGGCGGCAGGCGGCCGGATCCAAAGGACCCATGGTGGTGGCTACcccaggggagaggggaggcaaAGTGGGAGAGACCGCAACCTTCCCTCCCACTCAGGATGAGAAGGACTACCAGCCCACAGCGTTCTCTGGGAGCCACATCTCAGGGCTGACAAGACTGTTGGAGGAGCTGAAGCAGGCCAAGGAGTGCCAGAGCTCAGACACTTCACTAGCCTGGAGAGAAAGATCCACAGCATGGAGCTACGACACACTCAGAGGCAGAAAGAGCTCCagcagGTGATAGGTCAGACTCGGCTGGTGGTGGAGGCTGAGCAGCAGTCTGAGGTGGAGCGTTGGAGGAGGCTGGCTCAGGGGAAGACCCGGGAGCTGGAGGTCTTCTGTCTGGAACTGGACTCTATCCTGGACGTCTTGATAGAACTTCAGAGACAGGAAGTGGTCATCCCTGCTCCGGACCGGACTTCTGCTGTACCCTTCAGCTGGAGGACCTGAAACATGGGACATAGGCTCTTTCTAATTACTTACAAATCTGTCCTCACCTTGACCAGGCAAAAGCCAGCCTAATGATGAGCTTCCACTATTTCAGTTAAGTGTTTTTTATTCAATGCAGgggagaagatgaggagaggGCAAATTTGAAAGCAATTCACACAAAAGGTGACTAACTAATTATTCAAATTCATACCATTTGACATTGGCCTATTGTTATCCCCAAGTTGTGGGTTGTTGCTACACATTAACATatcatatttttatatatatatt
>TU145153
CATGGTGGTGGCTACcccaggggagaggggaggcaaAGTGGGAGAGACCGCAACCTTCCCTCCCACTCAGGATGAGAAGGACTACCAGCCCACAGCGTTCTCTGGGAGCCACATCTCAGGGGTGCTGCAGGAGAGCGAGGGGTTAAGGCTGCGTCTGGAGCTGCAGAGGACAAGGAGAGGGTGGTACTGCAGGCTGTAGGAGAGGGTGGTAATGCAGGCTGTAGGAGAGGGTGGTACTGCAGGCTGTAGGAGAGGGTGGTACTGCAGGCTGTAGCCGCACAGGCTGAATGCTTTATTTAGTGCCACAATAACACCTTCCAGTAAAAAAGGACTGCAGTAGTTCAGTGGTTATAGAGGTGCCTGACTCATTGGTAGAACATTGTTCAGTTTCCTCCATACAGACATACTGGAATATTCCTACCTAGCTTATTGTTGAGCTTATAATATGAAGAAATAAAACGTTATCAACATTTTCA

Function

symbol description
cep162 Acts upstream of or within cilium assembly and heart looping. Predicted to be located in cytoplasm and microtubule. Predicted to be active in axonemal microtubule; centriole; and centrosome. Is expressed in head. Orthologous to human CEP162 (centrosomal protein 162).

NR:

description
centrosomal protein of 162 kDa

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110533704 False 2915 mRNA 0.51 11 25417440 25427699
TU145153 True 476 lncRNA 0.51 1 25421991 25422466

Neighbor

gene id symbol gene type direction distance location
LOC110538828 grik2 coding downstream 306857 24862906 ~ 25110583 (-)
LOC110538978 LOC106605653 coding downstream 816055 24584393 ~ 24601385 (-)
LOC110538887 LOC106605647 coding downstream 876542 24531424 ~ 24540898 (-)
LOC100301652 LOC100301652 coding downstream 912847 24503806 ~ 24504593 (-)
LOC110538859 LOC106578507 coding downstream 924958 24480265 ~ 24492482 (-)
LOC110539072 cep162 coding upstream 1284 25428983 ~ 25443516 (-)
si:ch211-198c19.1 LOC106605502 coding upstream 31855 25459554 ~ 25460882 (-)
LOC110539098 LOC106605503 coding upstream 241327 25669026 ~ 25790259 (-)
LOC110539162 LOC106605511 coding upstream 1123133 26550832 ~ 26559134 (-)
LOC118938772 cg024 coding upstream 1149254 26576953 ~ 26579337 (-)
G125644 NA non-coding downstream 60859 25356366 ~ 25356581 (-)
G125643 NA non-coding downstream 62164 25354957 ~ 25355276 (-)
G125598 NA non-coding downstream 126117 25289718 ~ 25291323 (-)
G125388 NA non-coding downstream 461411 24954905 ~ 24956029 (-)
G125352 NA non-coding downstream 538092 24874869 ~ 24879348 (-)
G125693 NA non-coding upstream 13933 25441632 ~ 25441749 (-)
G125717 NA non-coding upstream 26365 25454064 ~ 25454339 (-)
G125771 NA non-coding upstream 72276 25499975 ~ 25500274 (-)
G125772 NA non-coding upstream 73078 25500777 ~ 25500996 (-)
G125775 NA non-coding upstream 75079 25502778 ~ 25503003 (-)
G125305 NA other downstream 640813 24775220 ~ 24776627 (-)
G125043 NA other downstream 1092604 24324580 ~ 24324836 (-)
G125003 NA other downstream 1147304 24269226 ~ 24270136 (-)
LOC110538705 LOC106577653 other downstream 1255997 24144519 ~ 24172836 (-)
G127083 NA other upstream 1133915 26561614 ~ 26562127 (-)
LOC110539285 LOC106579350 other upstream 1223677 26641958 ~ 26675649 (-)
LOC110485245 ubr5 other upstream 1843561 27231538 ~ 27278158 (-)
G129250 NA other upstream 2338458 27766157 ~ 27766532 (-)
LOC110485663 LOC106579570 other upstream 2668983 27933389 ~ 28149986 (-)
G125672 NA non-coding downstream 2541 25419147 ~ 25419450 (-)

Expression


Co-expression Network