LOC110486333 (LOC106605448)


Basic Information

Item Value
gene id LOC110486333
gene name LOC106605448
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29765682 ~ 29768627 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021557850.2
AGTGAGTATGCGGCTGGCGAGACTGGGTTTGGATGTCTACTCGCCATCCATATAAAACCAATGCGGAGACTTGCTGTTTACAGTCAGCTCAGAATTGTACGGATGATGACAATAAGTAGCTAACATTGTGACAGTATAGTGATTGGAATGCAATCAAACTGTTGGACATTTGTTCATCAGTGGAATTCAATAGGCTTAACTAGCTAATAATAGCGGTCGGCTATTTTCCACTTATATTTTCTAAACCACGGGACACTGAACAAATATTAAAATGGTCATCATTACAAAGAAATTGAAGACCTTTGAGGTCGTTTTCCATGATCCTACTAAGGCTTTCTACTCCAGTGGTGACAAGGTAGCCGGGAATATTGTGGTTGAGGTGTCCGAGGTGACCAAGGTGTCCGCTATGAGAGTGTTTGGAATTGGATGCGCAAAAGTGGAATACGCGAAAGGAAAGCACAGATGCCGtgaagacattgaatatctgaAATACGAAGATACCGTTTATCTGGACCACCAGCCTAGAGATTCCAATGGCTTGGTTACTCTCAGACCAGGGAACAGATATGAGTACATGTTTGGCTTTGAGCTGCCACATCCTGGGCAACTGGTGTCGTCCTACAAGGGGAAGTTTGGCTGTGTCCAGTATTATGTCAGGGCTGTGATGGAGAGGCCTTCCCAGCCTGCCTTGCAGTGCGAGAAACACTTTGAGGTGGAGGAGCCCTTGGACGTCAACACCCCTGACCTCCTGGCTCCAGCTGCAGGTACGAAGGAGAAGAAGCTCACCTGCATGTTCATCCCAGATGGACATGTGTCCATCAGTGCCAAGATCGACCGCAAGGGCTTCTGCGAGGGCGAGGACATCTGCATCAATGCCAAGTTTGAAAACACCTGCTCACGTATCGTGGTGCCCAAGGCAGCCATCATGGTCAAGCACACCTACCAGGCCAATGGCAGGACCAAGGTCCTGGGGCAGAAGCTCTCAGTCGTGAGGGGCAACCATATCATCTCGGGCATGTGTGACATGTGGCAGGGCAAGACCATCCGAGTGCCTAGGCTCAAGCCCTCACTCCTGGGGTGCGACATCATTCACGTGGACTATGCCCTCAGGaTCTATGTCCACATTCCCGGCAGTGACAAGGTGGTCCTAGAGTTGCCCCTGGTCATCGGGAACATCCCCTTCAATGGCTTTGGCAGCCGCACCAACAGCATGAGCAGCCAGGCAGAGTCCCTGAACACCCCCTTCAGTAGCTTTGGGTCGCTGTGCCTCCCGTCACAACCCCCCAGCTACAGCAACATCTCCCGCGACTGCCGTATCGACTCCGCCCTCACACCTCTGCTGGTCAACTACGACGCAGATGAGGATGAAGGACTGTTCATGCGCGCCCCCGAGCTTTGGtaccctcctccccctgcctACACCGAGGTTGACGAGGATCTCAAACAGCAATGGCCATGTTCATCGGGTCTGCTGAACCACGAGTAAGAGTTGCAATTAATCCCCGTTGTAGTCTAAGCACTGGTGGTTAGCCTTAGTGAGATCGGGGAACGGACTGGTGACTGGTTAAAGAGCAGCACAGCTGTGAAGCAGAAAGAGTGGGACCCTAGCCCTGAAGACTCTTTCAAGGAACAGAACTGAGATGTGGACTTGAGAGTCAAGTTGAAGTGAAACTATTCAGGTTGAATGAGTATGGATTGTAGATGTTGGTGTCCACTCCACATTCACTATCACCATTGCAGTCTTCAGAAACTGATcgttctacagttgaagtcggaagtttacatacacttaggttggagtcattaaaactagtttttcaaccactccacaaatgtattattaacaaactatagttttg

Function

NR:

description
thioredoxin-interacting protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021557850.2 True 1859 mRNA 0.50 6 29765682 29768627

Neighbor

gene id symbol gene type direction distance location
LOC110486279 LOC106605442 coding upstream 67996 29685855 ~ 29697686 (+)
LOC110486269 LOC106580132 coding upstream 80532 29679207 ~ 29685150 (+)
LOC118936731 dcst2 coding upstream 103654 29654875 ~ 29662028 (+)
LOC118944146 NA coding upstream 171466 29594164 ~ 29594216 (+)
LOC110486208 NA coding upstream 211736 29545045 ~ 29553946 (+)
LOC110486369 LOC106605449 coding downstream 47153 29815780 ~ 29833805 (+)
LOC110486403 LOC106580236 coding downstream 132230 29900857 ~ 29914741 (+)
gnrh-r LOC106605452 coding downstream 157109 29925736 ~ 29930354 (+)
LOC110486448 cr3l4 coding downstream 310021 30078648 ~ 30083392 (+)
LOC110486462 NA coding downstream 328544 30097171 ~ 30103693 (+)
G130335 LOC106580167 non-coding upstream 20815 29726551 ~ 29744867 (+)
G130345 LOC106581475 non-coding upstream 93737 29664010 ~ 29671945 (+)
G130297 LOC106605438 non-coding upstream 184272 29577661 ~ 29581410 (+)
G130282 NA non-coding upstream 210777 29554407 ~ 29554905 (+)
G130291 NA non-coding upstream 218640 29546659 ~ 29547042 (+)
G130410 NA non-coding downstream 16499 29785126 ~ 29785365 (+)
G130411 NA non-coding downstream 17077 29785704 ~ 29785943 (+)
G130424 NA non-coding downstream 30908 29799535 ~ 29799827 (+)
G130427 NA non-coding downstream 36547 29805174 ~ 29806131 (+)
G130419 NA non-coding downstream 71832 29840459 ~ 29840782 (+)
G130308 NA other upstream 124586 29600026 ~ 29641096 (+)
G129155 NA other upstream 280552 29484633 ~ 29485130 (+)
LOC110534631 LOC106580029 other upstream 287552 29424822 ~ 29478401 (+)
G128853 LOC106605419 other upstream 784394 28939899 ~ 28981288 (+)
G130414 NA other downstream 20949 29789576 ~ 29789831 (+)
G131491 NA other downstream 931555 30700182 ~ 30700623 (+)
G131517 ccne2 other downstream 979428 30748055 ~ 30749954 (+)
LOC110534710 LOC106605356 other downstream 1522843 31262054 ~ 31294577 (+)
eaf1 LOC106581241 other downstream 1591809 31360408 ~ 31366322 (+)

Expression


Co-expression Network