LOC110487411 (LOC106605313)


Basic Information

Item Value
gene id LOC110487411
gene name LOC106605313
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 32877901 ~ 32882058 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946084.1
CATACATTCCCCTTTTGAGTCAGATGTGTGAATCTGTACAGTGAAATGTCTGTCTGTGAAGTAACCTCATCGCCAGGCTCAATTACTACAGTGACAGAGAGCCGGCTGGGTGGAGATTATCTGTGAGTAATTAATGCAGACCAGAGTCAACCCATAAGTACTTATACAGATCCTATTGGGGATAACAACAGTAGTCGCACTTGCAGAAACAGTAGTCGCACTTGTATCGAATCACGCTTCAAACCAGCTTGAACAAAAAAGGGAATCCCAAAAAGCCTTCCTCACCCCAGGACACTTCAACAGACACCGTTGGTTATGGCTTTATGTGTATCTGAAGGATGCCAGAAGAGCTGCATTACTCTACAGTGgttataaaaaatttaaaaatgtCTTCACCAAAAGTGGAGGAGGGCCCTGCTCCCCACTCTCAAACCTTTGGAGGAGTGGCATTGTGTTTGGGGGTTCTTTGTGTCCTGTTGGTGTCAACCATTTTACCTCTCTGTGTCTACTTCAGCACTGCCCTCTCAGAGCACAACACAAATTTGGTGAGGGAACTGGAGCAGCTAACAGATGAGCATATATCCCTACTGGCAGCCAATCAGGACCTAATGAATCTCTACTGCAAGCTGAGTGTAGCCAATCATATTTTGCAAAGCGATTACATCAAAGTGTCTACTGAAAACCAGCAATTGAAGGCAGAGAGGATGAACTTGTCAAGAGACAGGGATGGGCTCAACTGGACTCTTGGGGTCATATTTCAGTTGAAGAATTTCCCAGTTGATAACTACTGCCCATATGAAGATGCCAACACCAAAGATAGAGCGTGCAAAccttgtcaagttggctgggtgctGTTCCAATCCAGTTGTTACCTGTTTCTGCACATTAAAGTCCCCTTCGGTCACCTTTGGAGGACCTGGCAAGGAAGCAGACAGCACTGCAAAAACAACAACGCCGATTTGGTTGACATAGGCAGTCAAGAGGAACAGGAATTCATTCTCAACAACACTCAAGCCTACTATGATGAAGATCATGGGTACTGGATCGGCCTGACTGACATAGCAGAAGACGGTCAATGGCTTTGGGTTGATGGACGTAATCAGAATCTGACTGATAGGTAA
>XM_036946079.1
CATACATTCCCCTTTTGAGTCAGATGTGTGAATCTGTACAGTGAAATGTCTGTCTGTGAAGTAACCTCATCGCCAGGCTCAATTACTACAGTGACAGAGAGCCGGCTGGGTGGAGATTATCTGTGAGTAATTAATGCAGACCAGAGTCAACCCATAAGTACTTATACAGATCCTATTGGGGATAACAACAGTAGTCGCACTTGCAGAAACAGTAGTCGCACTTGTATCGAATCACGCTTCAAACCAGCTTGAACAAAAAAGGGAATCCCAAAAAGCCTTCCTCACCCCAGGACACTTCAACAGACACCGTTGGTTATGGCTTTATGTGTATCTGAAGGATGCCAGAAGAGCTGCATTACTCTACAGTGgttataaaaaatttaaaaatgtCTTCACCAAAAGTGGAGGAGGGCCCTGCTCCCCACTCTCAAACCTTTGGAGGAGTGGCATTGTGTTTGGGGGTTCTTTGTGTCCTGTTGGTGTCAACCATTTTACCTCTCTGTGTCTACTTCAGCACTGCCCTCTCAGAGCACAACACAAATTTGGTGAGGGAACTGGAGCAGCTAACAGATGAGCATATATCCCTACTGGCAGCCAATCAGGACCTAATGAATCTCTACTGCAAGCTGAGTGTAGCCAATCATATTTTGCAAAGCGATTACATCAAAGTGTCTACTGAAAACCAGCAATTGAAGGCAGAGAGGATGAACTTGTCAAGAGACAGGGATGGGCTCAACTGGACTCTTGGGGTCATATTTCAGTTGAAGAATTTCCCAGTTGATAACTACTGCCCATATGAAGATGCCAACACCAAAGATAGAGCGTGCAAAccttgtcaagttggctgggtgctGTTCCAATCCAGTTGTTACCTGTTTCTGCACATTAAAGTCCCCTTCGGTCACCTTTGGAGGACCTGGCAAGGAAGCAGACAGCACTGCAAAAACAACAACGCCGATTTGGTTGACATAGGCAGTCAAGAGGAACAGGAATTCATTCTCAACAACACTCAAGCCTACTATGATGAAGATCATGGGTACTGGATCGGCCTGACTGACATAGCAGAAGACGGTCAATGGCTTTGGGTTGATGGACGTAATCAGAATCTGACTGATAGGTTTTGGAAGATTCAACCTGTATGGGGTCGCGATTGTGCTTTAACTAACCCAAACAATGAACCTTTGGCTAATTGGAATGCTGCACCATGTGGCCAGAGAAACCGATGGATCTGTGAGAGTAAAGCATTAATATGGTCAGGATAAATTGAGCCACGTTCACAGTCAAAAAAGCTATTAGCAGTGTATAACAATTTTAAAATAGAACACTTGTGTAGGGCTTTCATAGGTTCCGTTTTTTaatataaaaaaattataattgctGTTTTAGAAGCGATGCAATAATTCTAAATCAGCAGCTTTAATTGTCACTTCATGTAAATGTACCTCAGAGTAGTAAGGAAAGTTAATTGAGCAAAAAAAATGCATTACTGTGCTCATATGTAGCAACCTCATATCTGATGTTGATATCACATTGTTTAAAACAGCCATTTGAGAATATTAATACAAGACCACTAGACAAGTATAAAAACACCAGTTGACgctgaaatacactgctcaaaaaaataaagggaacacttaaacaacacaatgtaaccccaagtcaatcacacttctgtgaaatcaaactgtccactt

Function

NR:

description
asialoglycoprotein receptor 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946084.1 False 1121 mRNA 0.45 6 32877901 32881216
XM_036946079.1 True 1694 mRNA 0.42 7 32877901 32882058

Neighbor

gene id symbol gene type direction distance location
LOC110487428 NA coding upstream 2051 32873188 ~ 32875850 (+)
LOC110487398 LOC106605316 coding upstream 25758 32775600 ~ 32852143 (+)
rhbg2a rhbg2a coding upstream 193177 32673648 ~ 32684724 (+)
LOC110534753 LOC106605320 coding upstream 245046 32608262 ~ 32632855 (+)
isg20l2 isg20l2 coding upstream 272281 32597101 ~ 32605620 (+)
LOC110487447 LOC106605310 coding downstream 14357 32896415 ~ 32939810 (+)
LOC110487479 LOC106605309 coding downstream 106776 32988834 ~ 33002008 (+)
LOC110487536 NA coding downstream 146815 33028873 ~ 33045721 (+)
LOC110487571 m4a8a coding downstream 148252 33030310 ~ 33033853 (+)
tmem176l.1 m4a8a coding downstream 163774 33045832 ~ 33049288 (+)
G133324 NA non-coding upstream 33367 32844251 ~ 32844534 (+)
G133185 NA non-coding upstream 331910 32545778 ~ 32545991 (+)
G133163 NA non-coding upstream 356806 32520810 ~ 32521095 (+)
G133157 NA non-coding upstream 362694 32515008 ~ 32515207 (+)
G133374 NA non-coding downstream 99124 32981182 ~ 32982028 (+)
G133272 NA non-coding downstream 129004 33011062 ~ 33012909 (+)
G133415 NA non-coding downstream 199629 33081687 ~ 33081982 (+)
G133417 NA non-coding downstream 201290 33083348 ~ 33083575 (+)
G132342 LOC100136303 other upstream 990329 31834170 ~ 31887572 (+)
eaf1 LOC106581241 other upstream 1511579 31360408 ~ 31366322 (+)
LOC110534710 LOC106605356 other upstream 1584867 31262054 ~ 31294577 (+)
G131517 ccne2 other upstream 2127947 30748055 ~ 30749954 (+)
G131491 NA other upstream 2177278 30700182 ~ 30700623 (+)
G133473 LOC106605294 other downstream 285380 33167438 ~ 33169378 (+)
G133663 LOC106605282 other downstream 614396 33496454 ~ 33497285 (+)
G133760 LOC106605274 other downstream 931975 33814033 ~ 33814483 (+)
G134735 LOC100136012 other downstream 1080359 33962417 ~ 33962658 (+)
si:dkey-30e9.6 LOC106605205 other downstream 1805897 34687955 ~ 34692286 (+)

Expression


Co-expression Network