LOC110488005 (rab5a)


Basic Information

Item Value
gene id LOC110488005
gene name rab5a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34177043 ~ 34185964 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559952.2
TCTCAGCGCTACGTAGGTGCTCGATTTATCATCATACACCGTACCATACAAAACAAACGGGAAGTGGGAAAGGGACACGCTTTATGAAATTTATCGACCTTTGAAAAGATTGTGGAGTGccggaaatatatatattttttgtaaatccCTTCAGCTACCTAGTTAATTATATCGGATAAGTTCTAGGAGTAACCGTTCAAGCGGTACTTCTGCATCCAGAGCAAGAGACTGGGGTGTAGGACATGGCAAGTAAGGGTGGTGCAACACGACCCAATGGGCCGAACACAGGCAACAAGATCTCCCAGTTCAAATTAGTACTCTTAGGGGAGTCCGCCGTGGGAAAGTCCAGTCTTGTACTTCGCTTCGTCAAGGGCCAGTTTCATGAATTCCAAGAGAGCACAATTGGAGCTGCCTTCCTGACTCAGACAATATGTTTGGATGACACAACAGTCAAGTTTGAGATCTGGGACACAGCTGGTCAGGAGCGCTACCACAGCTTAGCACCCATGTACTACAGAGGTGCCCAGGCCGCAATCGTGGTCTACGACATCACTAACAAAGAGTCCTTTGCACGAGCAAAGAACTGGGTTAAGGAGCTTCAGAGACAAGCCAGTCCAAATATTGTAATAGCTTTAGCTGGGAACAAAGCTGACCTTGCAAACAAAAGAGCATTGGATTTTCAGGATGCCCAGTCGTACGCAGATGATAACAGTTTACTGTTCATGGAAACATCAGCAAAGACCTCTATGAATGTTAATGAAATGTTCATGGCTATTGCAAAGAAATTACCCAAGAACGAGCCTCAAGCTGACGGCGCGTACAGTGGGCGGAACCGGGGAGTGGATCTTACGGAGGCAGCTCAGCCGGCCAGTCGCTCCTGCTGCAGTACCTAAAACCTGGCCCACTCTTCCCACATgcaccttccccctctcctcctaacTTTGAATAACATCTGGACATGGTGTTCCCCTTTCTGACATCAGACCTTCCACCTCTCGTCCTTTCTCCCCGGAATAGCTAAAGACTCTGTATAGCTGCatttaatacttttttttgtttttactttcatttaaaaaaagtgtATGTCAGTATAATGTATGCATGTATCACTACAAGgcctaaaacatatttttttacttaaTTCAGTTGGAAGACTAAcccatatgagagagagagagagaacggtgtgtgtgtgtctgattccCTGAAGAGAAAGTGTAACCTAGGTCATAGGGTTTGTGGACTGGGGATAAAAGTAAGTTGTGTCCTTCCAACCAAAACAAACCAAATTCCCCCATTGTTAAATGCCTGGAGGCTATTACTGTTTGTACTGAGTATAATAACATTATTGAAGCAGTGTCAGGCAAGGACTGTCAAACCAAGCATTCCACTTCCTTGCACCTGCTGCCGAGACGACAACATCTTTGTCTGCAGAGAAGTTTGGCGAGAACATCCAACCGGTTGAACAGGGTTTAAGGGTGGTTTTGTGATTGGATGGCTGGTGACTCTGCAAGTTTGTCACATCTATGATGACTGGCTTGTGCATCATTGGAAGTCCCTCTTGAAATCACAACATTCTCTGGTTGATGCATTGATTTAATGAAGAACACTGAGACAGTTGGACATGCTCAGACAAGCTTTGTAAATTGTCTTGTTAAGACCTAACATATGACAAGTCCTTTGTTTCCTCAAACTGCTATTGTTCAGCTATCAACTTGTCAGAATTAGTGGTGTTTAAAATTAGGCTTCATAACATGCACCAACATAAGTCTTGACTATTACCTATCATCAGTCTGGAATATTACTCTACTGTTATATAGGGTGTTGCAAAGTCTCCTACCAATACATATTGGAGGGCATAAGCTTGTCAGGAAAATGTCTAGAGATTTTGAACAATTGTACAGTACACCAATGTCGGTCTAGGTCAGCTATGTGTTTTTTACCTTGTCACAAACTGGTTAAATGCTAATCAATGGTGGTCTTTTTAAATATGTAGTGTTATTAACAATTCAATTGCAATTCACCTGTGTCTTGTTACTTTTCTCAATGGTCTGTTCATATTTCAGAGGACTATTGCATTGCACAATTGTTGGTTATAGTTTAATTAATGACTGGCCATTATGTTTCATAAAACTCATGCACTGTGTCGGACTTGCTAACCTATTGCCTCAAACAACCGATAGTAGCACCATCTGACTGGTAGTCTTTCTGAAGCCAGGTGGATTTAACAATGTAAAACATGACTAGTGAAGGACTGATCAGTTTGAGTATCAGGGTACAAGTCAATAAATTCAATAAATGAGGTA

Function

symbol description
rab5a Enables GDP binding activity; GTP binding activity; and GTPase activity. Involved in several processes, including amyloid-beta clearance by transcytosis; early endosome to late endosome transport; and regulation of exocytosis. Located in several cellular components, including cytoplasmic side of early endosome membrane; nucleoplasm; and terminal bouton.

NR:

description
ras-related protein Rab-5A-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07887 RAB5A; Ras-related protein Rab-5A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559952.2 True 2306 mRNA 0.42 6 34177043 34185964

Neighbor

gene id symbol gene type direction distance location
LOC118939520 NA coding upstream 7793 34164350 ~ 34169250 (+)
LOC110487926 LOC106605271 coding upstream 231643 33887839 ~ 33945400 (+)
LOC110487915 LOC106582023 coding upstream 296935 33873905 ~ 33880108 (+)
LOC110487876 NA coding upstream 418251 33749647 ~ 33758792 (+)
tap1 tap1 coding upstream 430602 33733444 ~ 33746441 (+)
ube2e2 LOC106582102 coding downstream 100486 34279641 ~ 34317474 (+)
LOC110488035 LOC106582094 coding downstream 131644 34317608 ~ 34324592 (+)
nr1d2a LOC106582110 coding downstream 141986 34327950 ~ 34335871 (+)
LOC110488056 LOC106605265 coding downstream 164254 34350218 ~ 34366288 (+)
LOC110488078 LOC106605262 coding downstream 198542 34384506 ~ 34396588 (+)
G134970 NA non-coding upstream 6616 34170099 ~ 34170427 (+)
G134964 NA non-coding upstream 20196 34156616 ~ 34156847 (+)
G134925 NA non-coding upstream 63420 34108647 ~ 34113623 (+)
G134898 NA non-coding upstream 103781 34073044 ~ 34073262 (+)
G135023 NA non-coding downstream 90328 34276292 ~ 34328636 (+)
G135261 NA non-coding downstream 180768 34366732 ~ 34367044 (+)
G135295 LOC106582155 non-coding downstream 222188 34408152 ~ 34408477 (+)
G135316 NA non-coding downstream 282925 34468889 ~ 34470198 (+)
G134735 LOC100136012 other upstream 214385 33962417 ~ 33962658 (+)
G133760 LOC106605274 other upstream 362560 33814033 ~ 33814483 (+)
G133663 LOC106605282 other upstream 679758 33496454 ~ 33497285 (+)
G133473 LOC106605294 other upstream 1007665 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 2289471 31834170 ~ 31887572 (+)
si:dkey-30e9.6 LOC106605205 other downstream 501991 34687955 ~ 34692286 (+)
G135916 NA other downstream 785676 34971640 ~ 34971931 (+)
G135920 LOC106605214 other downstream 786485 34972449 ~ 34972801 (+)
LOC110488281 apom other downstream 799008 34984948 ~ 35000555 (+)
lypc LOC106584559 other downstream 965796 35151760 ~ 35153650 (+)

Expression


Co-expression Network