si:dkey-30e9.6 (LOC106605205)


Basic Information

Item Value
gene id si:dkey-30e9.6
gene name LOC106605205
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 34687955 ~ 34692286 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036946724.1
CCTTACTTCACATCAAACAGTGCAAGCTGAACTTGAAACTTGGTCATTTCTGAACATGTGTCTTCTGTAACAGATTGTGTCTTTGAAATTCAAGGTTACCGTTCATACAATTTCAGGACTGTGATATCACAATGACCTCTAACAGTTATTTGGATCCTTCGACATCAGTTTATTTGAATAAAAAGACAGTCTTTTCTGCCAGCCTGAACTTAGCCACCATAAGAAGCGAAGGTTTTATCCGTCCTCATTATTCACATCAGGTTGACCCATGGAACTTGAAGCCGCCTGATTTCTCTCCTAAACTCTACACATCTCTGAGTGTCCCTCGAAGGAAGAAGACAAAAAATACACATAATCCTTTACTGACACTTGCCTCCAGTGAGACAGTCTTAAGTGTGGACAGATTTACCCCAAACATTCTAATTCCTGAGATTGACCAGAATAAAAAAGCACTGCCAAAATTCAGCACATCATACAGACCTCCTGGCTCTTTAGAATCCAAGCTGATGTTTGTTAAAACAGGGAAATACCCTCCTGTGGCCTACAAGAACCCTAAACCACATAACTTTAGACAGCTTGCTGATGACATGCCAAATATGGTTACTGCAGCTGAAAGGGATCCTGGTCAGTTGAACTTCAAATCTCAGCACCTGAGTATAATTAGGGGGACCAAATCGGACACAGACATTTATTCAAGGGAACCTTTTGGGAAGATGGACACCTATAAGCCAACAGAGCCTAGATGGGAGGCCAGGCTCACACTCCCTAAATTGCCTTGGCCCCCAAAATCTGCCTCCTACACTGTGAGTGGGCTGGTTTATGCCCAGTCTGGCTATAGGCCCCACACCATTTTAATTCAATGCTTTTATGATACTTTAGGCCACTTCCGAAACGTGACTTAGTCAGTTACCAAGTTATTATgctgtttaacactgttttggtaaaaGGCTTAGGGcttgagaaatgtaaccactcaaattcataggcaGAGATATTGATGCAATGATTGACCCTCCATTATATCAAAATTATTGTTTTAACTACATGTTTTAAAGCTATACAGTGTAGGATCATCTTTCCTCCATTAAAAAGCCTAGAGCATAAGGCA
>XM_036946727.1
CCTTACTTCACATCAAACAGTGCAAGCTGAACTTGAAACTTGGTCATTTCTGAACATGTGTCTTCTGTAACAGATTGTGTCTTTGAAATTCAAGGTTACCGTTCATACAATTTCAGGACTGTGATATCACAATGACCTCTAACAGTTATTTGGATCCTTCGACATCAGTTTATTTGAATAAAAAGACAGTCTTTTCTGCCAGCCTGAACTTAGCCACCATAAGAAGCGAAGGTTTTATCCGTCCTCATTATTCACATCAGGTTGACCCATGGAACTTGAAGCCGCCTGATTTCTCTCCTAAACTCTACACATCTCTGAGTGTCCCTCGAAGGAAGAAGACAAAAAATACACATAATCCTTTACTGACACTTGCCTCCAGTGAGACAGTCTTAAGTGTGGACAGATTTACCCCAAACATTCTAATTCCTGAGATTGACCAGAATAAAAAAGCACTGCCAAAATTCAGCACATCATACAGACCTCCTGGCTCTTTAGAATCCAAGCTGATGTTTGTTAAAACAGGGAAATACCCTCCTGTGGCCTACAAGAACCCTAAACCACATAACTTTAGACAGCTTGCTGATGACATGCCAAATATGGTTACTGCAGCTGAAAGGGATCCTGGTCAGTTGAACTTCAAATCTCAGCACCTGAGTATAATTAGGGGGACCAAATCGGACACAGACATTTATTCAAGGGAACCTTTTGGGAAGATGGACACCTATAAGCCAACAGAGCCTAGATGGGAGGCCAGGCTCACACTCCCTAAATTGCCTTGGCCCCCAAAATCTGCCTCCTACACTAGACACAGGCACAGACGCGGAGTGTACAGTGCTTTCATggacagagtagaggagaagatctCCAGCTCTTGGAAAACTGGCTGACACTTTGACCTCTAAAGTCTTCTATGGAGTCCACAGCTGTGCAGTGATCTGTGCATCGGCTCCACTAAAATTTCCAGTGTGTTAAGCCAGACAATATGTTCTAATCTGGGTGTGTGAAAGGCATGGCTGAAATATTTGTATTCACAGAAAGGAATCTTGCAGGCTATAGCCTAATAAAAATACTTTGAGGTATCATGAAAATACAATAATTGTAGGCTAGACTAGAGAGTTCATTGCAAAACAATTGCCCATGCCATGACACTTTTTGAAAGATGTCAATTTATCTAGGCCTAATAGGctattgtgtgtgtataaatcTATTCTCTCAGACAATAGGCAACAAAGATAATCCCAGTAACTGGAAAATGTAAACAAAGTGTGTCATTACAATGCCATTGAAACTAATTTCTAAAATGTAGGCCGAAATGCAATTAAAGTTCACAATTGGAGAGCAGCTAAACCTCGCTTAATCCAGAACAAAAATCTGGAGTAATTAGTCAGATGCTCGATTAAATTCTGGGTCCATacatgagggagggagaagggaacaaACAGCTCCACCTGTTCTCTTCGCAAGTTAGGGGCAAATCTATGGGCCAAATGTTCCCTCCCCTTTCCGAAATTCTAAAGCACCAGAAATAATGCTCCTCATTATCTCACACTTCCCATTGTATCTTGACAAATGAATGTACCATTTATGTTAAAGTCGTCTGTCAACAAGAGATTAGAGAGCAGCCAAACTAATTTCGGAACCCGGAACCAAATTATTGAAAATGTTTGTTCATGTAGCAATTACAAGCACATTCCTATTGCTAAACGTGCCCTACATTTGTAGGCTATATAAAAGTTTGCATTCGAGAGAAAAGTTAAGTATATTTAGAAGTTGTAGCCTACACATTGTATTCCTGACCTggggggtatactacaaagcagcaTCAATgatttagccagctaacttttATAAGCAACCAGAAATAACTTGGTTTTATggttaataaaataaaattgttgtTAAATCAATTAGACCATGCCCATGTCAAGCTTAtctttatacaaaataaaaaattatcAGAATATTGTTATAATCCTGTTTTGTAGTATgcccacagagtttctaaaccttGTTATAAACTGAGTGGTTCGAAAGCTGAATGccgattggctgaaagccatggtatatcagaccgtataccatgggtatgacaaaaacatttttttactgttgtaattacgttggtaaccagtttgtaaagcaataaggcaccttgtggtatatggccaacataccaccATGTCTGACTCCAGGTAAAaactgcaggtagcctagcggttaacagAGTCCCACCAGTaaacgaaaggtcgctggtttgaatccccaagctgactggGTAAAAACTAAAATCTATGTGCCCTTGGGCTAGGCActaaaccctaattgctcctgtaggtcactctggataagagtgtctcctAAAATGTAAGACGTTGTGCTTAAGaatagcccttagctgtggtatattggccatatacccctCTGCAGTAGACcatggatatactgacaagatacatGTCCCTCTGCCCTAACGAAACCTTTGTCCACAAAGCGGCATGGAGGGCTGTCTCGCTCCCGCCTATCCTTTCTTTGAATTGGTTGCTACATCACATTATTGTAATCCCTTTTTAAATATTTGATTAGGGTCGTTGACgtcaaccgcctgtattcaatCTCGAGACAACTCCAATATGAAGTGTTTGTTATTTTCAAAGTTGCCGGGATGTCACGTACCCTATTTATAACAGTACAATCGTAACAACTTAAACATTACAAAACttatattcgatcaaataaacctCGTGTTGCAAATAAGCCATTAAACGCCACCTGCTGTAGGGAGGCAGATTTTCCGCCGAGTTGGACCCCTCACTCTGTCTGTACTCGCCAATTTCGATTGTTTGTAAACTGGTTCGACCTGGATGGCGCGCTTTGGTCACGTCCACATTTTATCCAACAGGTGCTTGCGCTTAGTAATTACAATGTTCTTTGTTGATGGGTGTTTGCCTAATATCTTTCTTCGTTGAATATTTATGTGACATTATGTCCAGATGTGTTGAAATGTATTATGTATTTGCTAGTGATATTGAAACTAGTGAAGTATTGAGTGAGATCTTTATTTAAACTGAGGAAATACCTGTTATGTTCATTTTGGATTATCCCAGTTTTAAGGGTTGggttattattatgattattattatttttaccttACTGGCCTCAGATGGCTCATTTTCGGGTAAATTTAGGCTGGAGTGGCATGTTGTCCCAGCTGGGGCTCTGCTAAACTCAGCTGTGTGAGGAATTGTCGGCACTCTGCCTA
>TU156107
CATTGTTCCTCGGTTGCTAGGACGTTTCTCTTTTTTCTTTTAGCGGAGTCTCCTGCTGTTCTCAGACCTTTTGCATATTCTTTATGTAAAGTCTCCAGACCCTGGTCACTTAGCAACCACTTTTATTGTATTAACACTTTCTTCCTGTGTTGTCCCTTACTTCACATCAAACAGTGCAAGCTGAACTTGAAACTTGGTCATTTCTGAACATGTGTCTTCTGTAACAGATTGTGTCTTTGAAATTCAAGGTTGACCCATGGAACTTGAAGCCGCCTGATTTCTCTCCTAAACTCTACACATCTCTGAGTGTCCCTCGAAGGAAGAAGACAAAAAATACACATAATCCTTTACTGACACTTGCCTCCAGTGAGACAGTCTTAAGTGTGGACAGATTTACCCCAAACATTCTAATTCCTGAGATTGACCAGAATAAAAAAGCACTGCCAAAATTCAGCACATCATACAGACCTCCTGGCTCTTTAGAATCCAAGCTGATGTTTGTTAAAACAGGGAAATACCCTCCTGTGGCCTACAAGAACCCTAAACCACATAACTTTAGACAGCTTGCTGATGACATGCCAAATATGGTTACTGCAGCTGAAAGGGATCCTGGTCAGTTGAACTTCAAATCTCAGCACCTGAGTATAATTAGGGGGACCAAATCGGACACAGACATTTATTCAAGGGAACCTTTTGGGAAGATGGACACCTATAAGCCAACAGAGCCTAGATGGGAGGCCAGGCTCACACTCCCTAAATTGCCTTGGCCCCCAAAATCTGCCTCCTACACTAGACACAGGCACAGACGCGGAGTGTACAGTGCTTTCATggacagagtagaggagaagatctCCAGCTCTTGGAAAACTGGCTGACACTTTGACCTCTAAAGTCTTCTATGGAGTCCACAGCTGTGCAGTGATCTGTGCATCGGCTCCACTAAAATTTCCAGTGTGTTAAGCCAGACAATATGTTCTAATCTGGGTGTGTGAAAGGCATGGCTGAAATATTTGTATTCACAGAAAGGAATCTTGCAGGCTATAGCCTAATAAAAATACTTTGAGGTATCATGAAAATACAATAATTGTAGGCTAGACTAGAGAGTTCATTGCAAAACAATTGCCCATGCCATGACACTTTTTGAAAGATGTCAATTTATCTAGGCCTAATAGGctattgtgtgtgtataaatcTATTCTCTCAGACAATAGGCAACAAAGATAATCCCAGTAACTGGAAAATGTAAACAAAGTGTGTCATTACAATGCCATTGAAACTAATTTCTAAAATGTAGGCCGAAATGCAATTAAAGTTCACAATTGGAGAGCAGCTAAACCTCGCTTAATCCAGAACAAAAATCTGGAGTAATTAGTCAGATGCTCGATTAAATTCTGGGTCCATacatgagggagggagaagggaacaaACAGCTCCACCTGTTCTCTTCGCAAGTTAGGGGCAAATCTATGGGCCAAATGTTCCCTCCCCTTTCCGAAATTCTAAAGCACCAGAAATAATGCTCCTCATTATCTCACACTTCCCATTGTATCTTGACAAATGAATGTACCATTTATGTTAAAGTCGTCTGTCAACAAGAGATTAGAGAGCAGCCAAACTAATTTCGGAACCCGGAACCAAATTATTGAAAATGTTTGTTCATGTAGCAATTACAAGCACATTCCTATTGCTAAACGTGCCCTACATTTGTAGGCTATATAAAAGTTTGCATTCGAGAGAAAAGTTAAGTATATTTAGAAGTTGTAGCCTACACATTGTATTCCTGACCTggggggtatactacaaagcagcaTCAATgatttagccagctaacttttATAAGCAACCAGAAATAACTTGGTTTTATggttaataaaataaaattgttgtTAAATCAATTAGACCATGCC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106605205

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036946724.1 False 1108 mRNA 0.41 4 34688109 34689753
XM_036946727.1 False 3259 mRNA 0.40 5 34688109 34692286
TU156107 True 1907 TUCP 0.40 5 34687955 34690946

Neighbor

gene id symbol gene type direction distance location
vwde LOC106605201 coding upstream 41332 34644435 ~ 34646777 (+)
LOC110488146 tmem106b coding upstream 53135 34626361 ~ 34634974 (+)
LOC110488114 LOC106582161 coding upstream 223516 34432779 ~ 34464593 (+)
LOC110488092 LOC106605261 coding upstream 255885 34423390 ~ 34432224 (+)
LOC110534788 NA coding upstream 282224 34398314 ~ 34405885 (+)
arl4aa LOC106605206 coding downstream 324 34692610 ~ 34695204 (+)
LOC110488257 LOC106605215 coding downstream 269085 34961371 ~ 34964552 (+)
LOC110488281 apom coding downstream 292662 34984948 ~ 35000555 (+)
lt-b2 lt-b2 coding downstream 312294 35004580 ~ 35009706 (+)
tnf-alpha tnf-alpha coding downstream 330721 35023007 ~ 35025008 (+)
G135380 thsd7a non-coding upstream 132744 34554573 ~ 34555365 (+)
G135341 LOC106582184 non-coding upstream 176396 34510480 ~ 34511713 (+)
G135316 NA non-coding upstream 217911 34468889 ~ 34470198 (+)
G135295 LOC106582155 non-coding upstream 279632 34408152 ~ 34408477 (+)
G135261 NA non-coding upstream 321065 34366732 ~ 34367044 (+)
G135671 NA non-coding downstream 45996 34738282 ~ 34738494 (+)
G135685 NA non-coding downstream 64345 34756631 ~ 34757180 (+)
G135861 NA non-coding downstream 202993 34895279 ~ 34895499 (+)
G135865 NA non-coding downstream 209274 34901560 ~ 34901780 (+)
G135873 NA non-coding downstream 221440 34913726 ~ 34914891 (+)
G134735 LOC100136012 other upstream 725451 33962417 ~ 33962658 (+)
G133760 LOC106605274 other upstream 873626 33814033 ~ 33814483 (+)
G133663 LOC106605282 other upstream 1190824 33496454 ~ 33497285 (+)
G133473 LOC106605294 other upstream 1518731 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 2800537 31834170 ~ 31887572 (+)
G135916 NA other downstream 279354 34971640 ~ 34971931 (+)
G135920 LOC106605214 other downstream 280163 34972449 ~ 34972801 (+)
lypc LOC106584559 other downstream 459474 35151760 ~ 35153650 (+)
LOC110488391 LOC106582385 other downstream 488393 35180650 ~ 35184002 (+)

Expression


Co-expression Network