LOC110533739 (ppt2a)


Basic Information

Item Value
gene id LOC110533739
gene name ppt2a
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35122803 ~ 35127514 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110533739
AGGTAAACATAGTAGACTGGAACTTACATTTCTCGGGTAATGCAATTATGCCAGGGTTATGTAACTAATTATTATCTCCTGCACGCTGAAGGAATCAAACTTTATTTTTCGGTGGTTTAATTGAAAATGAGAGCATCGTTGGACATCAATGGACTTCTGCTGCTCTTATGTGGAGTTAACCTGGCCGACACGCTTGGGTACAAACCGGTCATCATTGTCCACGGCCTCTTTGACGGTCCTAAACAATTCCTTATACTTTATACAGTCTTGGCCCATCCAGGTACCAATATGTCAGTGATAGATCTGTATGATAACATGGCCAGCCCGACGCCACTGTGGGTGCAGGTGCAGGGCTTCAAAAATATGTTCTATCCAATCATGCAGGAGGCATAGCATGGCGTCCATCTTATCTGCTTCTCACAAGGTGGTCTGATATGTCAAGGACTTCTTTCTACACTTCCTGACCATAATGTCCAGTccttcatctccctctcatcACCACAGGCTGGCCAGTATGGAGACACAGAAATTCTGACATTGTTTTTTCCTCACTATCTAAAGGCCCGTGTTTTTCACCTGTGCTACTCTTCAGTGGGACAGAAATGGTCCATCTGAAATTTCTGGAATGACCCACACCAAAGAGAACGCTTCCTGAAGAGCAGCAATTATCTGGCCctgctgaatggagagagaccacACAGGGAAATGACAGAGTGGAGGAAGAACTTCCTGCGTATCAACAAGCTGGTGTTGATTGGAGGACCAGATGATGGCGTGATTACACCATGGGAGTCCAGTCAGTTTGGATTTTATGACTTTAACGAGACCATTGTTGAGATGAGGAACCAGGAATGGTACGTTAGGGATTCGTTTGGGCTGAAGACATTGCATGCTCGTGGAGACCTGGCTGTGTATGTGCTCTCAGGAGTGAAGCACAGCTATTGGCATTCTAATGAGACGGTGTTCAGAGGCTGCATAGAGgagtgcacacatacacactggatATAATGTTCACAGAACAGACATAAAAGGTTATGCACATTGTCTTTGATTGACATATCATAGTTGTATGTAGtgcctttttttatatatacagtattgttTGTCTGTGATTATGAAACAGCGAAATCAAGTGTTTTTTGTACAATAATAGGAAATACACTGAATTGAACTCAATTTCACATGGTGTGTGCTTGCACAATGCTTTCACTCTTCTCCTGGTGAATCAGACTTGTT
>TU156663
ATGCCAGGGTTATGTAACTAATTATTATCTCCTGCACGCTGAAGGAATCAAACTTTATTTTTCGGTGGTTTAATTGAAAATGAGAGCATCGTTGGACATCAATGGACTTCTGCTGCTCTTATGTGGAGTTAACCTGGCCGACACGCTTGGGTACAAACCGGTCATCATTGTCCACGGCCTCTTTGACGGTCCTAAACAATTCCTTATACTTTATACAGTCTATGAG
>TU156665
GGGTGCAGGTGCAGGGCTTCAAAAATATGTTCTATCCAATCATGCAGGAGGCATAGCATGGCGTCCATCTTATCTGCTTCTCACAAGGTCTCTCTATCTCAGTTATTTAGCATTTTTGGAACAAGACATAGAGATATAGCTCTGTCTGCTTAATGTTGTCTCCCCCTGCTTCTCCTAGGTGGTCTGATATGTCAAGGACTTCTTTCTAC

Function

NR:

description
lysosomal thioesterase PPT2-A-like

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process
GO:0008474 palmitoyl-(protein) hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110533739 False 1236 mRNA 0.44 8 35122803 35127514
TU156663 False 226 lncRNA 0.42 1 35122850 35123075
TU156665 True 209 lncRNA 0.44 1 35123857 35124065

Neighbor

gene id symbol gene type direction distance location
tnf-alpha tnf-alpha coding upstream 97795 35023007 ~ 35025008 (+)
lt-b2 lt-b2 coding upstream 113097 35004580 ~ 35009706 (+)
LOC110488281 apom coding upstream 122818 34984948 ~ 35000555 (+)
LOC110488257 LOC106605215 coding upstream 158251 34961371 ~ 34964552 (+)
arl4aa LOC106605206 coding upstream 427599 34692610 ~ 34695204 (+)
LOC110488331 LOC106582353 coding downstream 456 35127970 ~ 35141476 (+)
LOC110488356 ccdc105 coding downstream 22997 35150511 ~ 35151707 (+)
lypc LOC106584559 coding downstream 24287 35151760 ~ 35153650 (+)
LOC110488375 LOC106605227 coding downstream 45060 35172574 ~ 35180466 (+)
LOC110488391 LOC106582385 coding downstream 53136 35180650 ~ 35184002 (+)
G136055 NA non-coding upstream 20728 35101843 ~ 35102075 (+)
G136044 LOC106605219 non-coding upstream 33471 35087279 ~ 35089332 (+)
G136021 LOC106582320 non-coding upstream 73849 35042312 ~ 35048954 (+)
G136020 LOC106605218 non-coding upstream 83880 35036470 ~ 35038923 (+)
G136019 NA non-coding upstream 87542 35035019 ~ 35035261 (+)
G136079 NA non-coding downstream 16221 35143735 ~ 35145446 (+)
G136086 NA non-coding downstream 30318 35157832 ~ 35158037 (+)
G136097 NA non-coding downstream 71828 35199342 ~ 35200486 (+)
LOC110534843 LOC106605230 non-coding downstream 105680 35205181 ~ 35239245 (+)
G136144 NA non-coding downstream 161863 35289377 ~ 35289644 (+)
G135920 LOC106605214 other upstream 150002 34972449 ~ 34972801 (+)
G135916 NA other upstream 150872 34971640 ~ 34971931 (+)
si:dkey-30e9.6 LOC106605205 other upstream 431857 34687955 ~ 34692286 (+)
G134735 LOC100136012 other upstream 1160145 33962417 ~ 33962658 (+)
LOC110488639 LOC106605005 other downstream 658177 35785691 ~ 35788114 (+)
LOC100653444 LOC106584591 other downstream 727635 35855149 ~ 35865269 (+)
G136994 NA other downstream 855318 35982832 ~ 36037741 (+)

Expression


Co-expression Network