LOC110488391 (LOC106582385)


Basic Information

Item Value
gene id LOC110488391
gene name LOC106582385
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35180650 ~ 35184002 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560627.2
GACCGCCCCTTGGCCTACGACGTCAGATGGTGCGAAGATGTACAGTATCTTGAAGAGAAGCCTATTAGACAACATAGAATAGAAGACACATAGCCCAATCTCACAAAACCTGGTTTAAATTACAGGTTGGCATAAAATAGGCCAAAAACCGTTGGCGACATATTAATCGGTGTCTTTGAAGACTTGGGAGAACCTGAATTGAAGAAGTTCAGACGTAAACTCTGTGACCGCAAGCAGGAGCCAAAAGTTCACAAGAGCATTGTTGAGAAAGCGGGCCCAGTGGACTTGGTAGAGCTTCTGACCCGTACATTCACTGAATACGGGGCTGTGAATGTGGATATAGAGGTCTTGGGTGCAATTAACTTCCAGGGTGCAGCAGGGAACTGACGGATTTCAAGAAATCTCACAGATCTTGCGTAACATCTGGTGCTGCAATGGCTGGTGCACCTGGAAAAAAGAACATGATCAAAGacAAACACTTTGTGGACCATCACCGGACGGCCCTGATTGACAGAGTGAGCCAGGTGGAACCCCTACTGGATAGACTCCTGGAGAGGGGAATCATCACCCAAAACGCCTACAGTGAAGTGAGGGCTAACAGAACCAATCAGAAAAAGATGAGGGAGCTTTTCGACGGCCCTCTGAAAGCATGTGGAGCCAAAGGCAAAGATATATTCTTAGATATTCTGATGGATTTGGAGGCATTCCTGATCAATGACCTGAAGGGGGAATAATGAGGATAGGGGCCATTTTTCTTTTTTCTAAGGCAAGTGACAAAAATATGATGATAATAATGCACTCTGTTTGACATTATATTCTTAAATTGGAAAAATGAATTGTCTCCAACATTtgcaataaaataaacattttatattGAC
>XM_021560632.2
GACCGCCCCTTGGCCTACGACGTCAGATGGTGCGAAGATGTACAGTATCTTGAAGAGAAGCCTATTAGACAACATAGAATAGAAGACACATAGCCCAATCTCACAAAACCTGGTTTAAATTACAGGTTGGCATAAAATAGGCCAAAAACCGTTGGCGACATATTAATCGGTGTCTTTGAAGACTTGGGAGAACCTGAATTGAAGAAGTTCAGACGTAAACTCTGTGACCGCAAGCAGGAGCCAAAAGTTCACAAGAGCATTGTTGAGAAAGCGGGCCCAGTGGACTTGGTAGAGCTTCTGACCCGTACATTCACTGAATACGGGGCTGTGAATGTGGATATAGAGGTCTTGGGTGCAATTAACTTCCAGGGTGCAGCAGGGAACTGACGGATTTCAAGAAATCCTATTTTACAGCTCACAGATCTTGCGTAACATCTGGTGCTGCAATGGCTGGTGCACCTGGAAAAAAGAACATGATCAAAGacAAACACTTTGTGGACCATCACCGGACGGCCCTGATTGACAGAGTGAGCCAGGTGGAACCCCTACTGGATAGACTCCTGGAGAGGGGAATCATCACCCAAAACGCCTACAGTGAAGTGAGGGCTAACAGAACCAATCAGAAAAAGATGAGGGAGCTTTTCGACGGCCCTCTGAAAGCATGTGGAGCCAAAGGCAAAGATATATTCTTAGATATTCTGATGGATTTGGAGGCATTCCTGATCAATGACCTGAAGGGGGAATAATGAGGATAGGGGCCATTTTTCTTTTTTCTAAGGCAAGTGACAAAAATATGATGATAATAATGCACTCTGTTTGACATTATATTCTTAAATTGGAAAAATGAATTGTCTCCAACATTtgcaataaaataaacattttatattGAC
>TU156686
GTGCGAAGATGTACAGTATCTTGAAGAGAAGCCTATTAGACAACATAGAATAGAAGACACATAGCCCAATCTCACAAAACCTGGTTTAAATTACAGGTTGGCATAAAATAGGCCAAAAACCGTTGGCGACATATTAATCGGTGTCTTTGAAGACTTGGGAGAACCTGAATTGAAGAAGTTCAGACGTAAACTCTGTGACCGCAAGCAGGAGCCAAAAGTTCACAAGAGCATTGTTGAGAAAGCGGGCCCAGTGGACTTGGTAGAGCTTCTGACCCGTACATTCACTGAATACGGGGCTGTGAATGTGGATATAGAGGTCTTGGGTGCAATTAACTTCCAGGGTGCAGCAGGGAACTGACGGATTTCAAGAAATCTCACAGATCTTGCGTAACATCTGGTGCTGCAATGGCTGGTGCACCTGGAAAAAAGAACATGATCAAAGacAAACACTTTGTGGACCATCACCGGACGGCCCTGATTGACAGAGTGAGCCAGGTGGAACCCCTACTGGATAGACTCCTGGAGAGGGGAATCATCACCCAAAACGCCTACAGTGAAGTGAGGGCTAACAGAACCAATCAGAAAAAGATGAGGGAGCTTTTCGACGGCCCTCTGAAAGCATGTGGAGCCAAAGGCAAAGATATATTCTTAGATATTCTGATGGATTTGGAGGCATTCCTGATCAATGACCTGAAGGGGGAATAATGAGGATAGGGGCCATTTTTCTTTTTTCTAAGGCAAGTGACAAAAATATGATGATAATAATGCACTCTGTTTGACATTATATTCTTAAATTGGAAAAATGAATTGTCTCCAACATTtgcaataaaataaacattttat
>TU156687
GTGCGAAGATGTACAGTATCTTGAAGAGAAGCCTATTAGACAACATAGAATAGAAGACACATAGCCCAATCTCACAAAACCTGGTTTAAATTACAGGTTGGCATAAAATAGGCCAAAAACCGTTGGCGACATATTAATCGGTGTCTTTGAAGACTTGGGAGAACCTGAATTGAAGAAGTTCAGACGTAAACTCTGTGACCGCAAGCAGGAGCCAAAAGTTCACAAGAGCATTGTTGAGAAAGCGGGCCCAGTGGACTTGGTAGAGCTTCTGACCCGTACATTCACTGAATACGGGGCTGTGAATGTGGATATAGAGGTCTTGGGTGCAATTAACTTCCAGGGTGCAGCAGGGAACTGACGGATTTCAAGAAATCCTATTTTACAGCTCACAGATCTTGCGTAACATCTGGTGCTGCAATGGCTGGTGCACCTGGAAAAAAGAACATGATCAAAGacAAACACTTTGTGGACCATCACCGGACGGCCCTGATTGACAGAGTGAGCCAGGTGGAACCCCTACTGGATAGACTCCTGGAGAGGGGAATCATCACCCAAAACGCCTACAGTGAAGTGAGGGCTAACAGAACCAATCAGAAAAAGATGAGGGAGCTTTTCGACGGCCCTCTGAAAGCATGTGGAGCCAAAGGCAAAGATATATTCTTAGATATTCTGATGGATTTGGAGGCATTCCTGATCAATGACCTGAAGGGGGAATAATGAGGATAGGGGCCATTTTTCTTTTTTCTAAGGCAAGTGACAAAAATATGATGATAATAATGCACTCTGTTTGACATTATATTCTTAAATTGGAAAAATGAATTGTCTCCAACATTtgcaataaaataaacattttat

Function

NR:

description
PREDICTED: apoptosis-associated speck-like protein containing a CARD isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560627.2 False 878 mRNA 0.44 3 35180650 35184002
XM_021560632.2 False 890 mRNA 0.43 3 35180650 35184002
TU156686 False 843 TUCP 0.47 3 35180679 35183996
TU156687 True 855 TUCP 0.39 3 35180679 35183996

Neighbor

gene id symbol gene type direction distance location
LOC110488375 LOC106605227 coding upstream 184 35172574 ~ 35180466 (+)
lypc LOC106584559 coding upstream 27015 35151760 ~ 35153650 (+)
LOC110488356 ccdc105 coding upstream 28943 35150511 ~ 35151707 (+)
LOC110488331 LOC106582353 coding upstream 39174 35127970 ~ 35141476 (+)
LOC110533739 ppt2a coding upstream 53136 35122803 ~ 35127514 (+)
dnajc28 dnajc28 coding downstream 3823 35187825 ~ 35195853 (+)
LOC110534843 LOC106605230 coding downstream 21179 35205181 ~ 35239245 (+)
LOC110488465 psmc4 coding downstream 110097 35294099 ~ 35307452 (+)
LOC110488474 LOC106605235 coding downstream 141274 35325276 ~ 35334443 (+)
LOC110488522 lsr coding downstream 212333 35396335 ~ 35405972 (+)
G136086 NA non-coding upstream 22613 35157832 ~ 35158037 (+)
G136079 NA non-coding upstream 35204 35143735 ~ 35145446 (+)
G136055 NA non-coding upstream 78575 35101843 ~ 35102075 (+)
G136044 LOC106605219 non-coding upstream 91318 35087279 ~ 35089332 (+)
G136097 NA non-coding downstream 15340 35199342 ~ 35200486 (+)
G136144 NA non-coding downstream 105375 35289377 ~ 35289644 (+)
G136199 NA non-coding downstream 207066 35391068 ~ 35391284 (+)
G136201 LOC106584099 non-coding downstream 209306 35393308 ~ 35393788 (+)
LOC110488281 apom other upstream 180095 34984948 ~ 35000555 (+)
G135920 LOC106605214 other upstream 207849 34972449 ~ 34972801 (+)
G135916 NA other upstream 208719 34971640 ~ 34971931 (+)
si:dkey-30e9.6 LOC106605205 other upstream 489704 34687955 ~ 34692286 (+)
LOC110488639 LOC106605005 other downstream 601689 35785691 ~ 35788114 (+)
LOC100653444 LOC106584591 other downstream 671147 35855149 ~ 35865269 (+)
G136994 NA other downstream 798830 35982832 ~ 36037741 (+)
G137058 LOC106605156 other downstream 915609 36099611 ~ 36100277 (+)
LOC110488849 LOC106605147 other downstream 1197890 36354883 ~ 36405310 (+)

Expression


Co-expression Network