dnajc28 (dnajc28)


Basic Information

Item Value
gene id dnajc28
gene name dnajc28
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35187825 ~ 35195853 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560639.2
GCCACAGTTGTTCACGTTAAGTTTCTGTCTTCAGTGTGTCTGTAGTTTAAGAAAACACAGGATTAGGCAAAAACTACAACTCCCTGCATTCATTGGGAGAGTTAGCTAACAGCACCAAACAAACATGTCCGACCTCTTCTAATTATACCAAAGTGATCCGACCTGATTGTTGTCTGGCGCTGAACCTATTGGGAAATAACACTGTCTGAAACTAATGAGAAGGACAACTGTATTTTAATAAGGTGTGTGCTTCTGCGTGCCCCAGCAGAGATGAGTTACGCCATGCAGCTGTTGATTCACCGTGGGGATATCTGTCATGGCCGCATGCTGCTCCCCCTGGGCCTCCGGCCCCTTCTCCGCACGCTGAGTTCTGGTCCCCGTGTGAGCCGCAGCCTTCGGGAGAGCTACCAGCTGCTACAGCTTGAGCTTCCAGATGTGGGCGAGAGTAGCCCTGCGCAGGTGAAAGAAGCCTACCTACGCATGGCCAAGCTGTACCATCCAGACTCGGGCGCTGCTACAGCAGACGAGGCACTGTTTGCGCGGGTAGAGGAGGCATACCGCGCCGTGCTGGCGCACCAGTCCCGGCTTCAGAGCTGTGGGGGTTcgatggaagaagaggaggagaaggtgaaAGGCGTGGCTCCTCAGCACCGCCACTACCTGAGCTACGAGGGCGTGGGCTCTGGGACGCCTAGCCAGCGCGAGCGCCAATACCGTCAATTCCGAGTGGATCGGGCGGTGGAGCAGGTCCTCGACTACCGCCAGAAGGAGCATGAGACGGCGGCTGCAGCCGAGGGGGCGCTGGTGGAGAGGGATGTCCGCCAGCGCAGCCGGCAGATCAAGGTTACACAGGCAGTGGAGAGGCTGGTGGAAGACCTCATTCAGGAATCCATGTCCCGGGGAGACTTCCGCAACCTGAGTGGCGCCGGGAAGCCCATCAACAAGTTTGAGCACAACCCGTATGCCGACCCCATGACCCACAACCTCAACCGCATCCTCATCGACAACGGCTACCAGCCACCCTGGATTGTCACGCAACGCGACATCCGAGAGGACATCGCGCAGATCCGAGAGAGACTGCTGCAGGGCCAGGCGCGGCTCACCGACCCCATGAACCCCAGGGAGCATGCTCAGTGGCAGCAGCTGTGTGGGGTGGTGGCGGATGACCTTATGAAGCTCAATAAAACGGTGGATAACTTCAACCTGATTGCGCCCATGCTTACCATGCAAATGGTCCACTTCAGTTTGGAGCGTGAGATCGACCGTGCAGAGAAAGCAGCCTTTCAAGGCAGACAGGAGAgcaagagggaaagagtgagggagtgggaggagcagagaagagaaagagaaagggagcgGGAGAAGAGAGATAAGATTAAAACACATCAACACTCTTGGCAAGGCGGCCTGCTGGCATGGATGCAGAATTTACTCAAATGAGCAATGGACCTTGAAGGCAAAATTAGATAAAAAAGGATATCTCAAATCAAACTTTTATTTATAATCCATTTACACAGGTGTCAACACACTTCGAGAGGACAAGACAGAGGTGTTGAATCATTTGTCTTTTATGTCATTTTCAGTGTTTTTGCTACATTGGGTTGATTACAGTAGCATGTTATAACACACAGAATAATACAACAAGCCACTACTACAACACGGTTACTTGaccttactgtaactcaactgTGCTTTACAATAATACTACACAGTGTCAGTGTCTGGACCTCAGGACACAATGGTAATGGTATCGGACTACAATAATCCATTTAATGAAATACTTTGAATCTACGTTTATAAGCTAAGCAATTCTAATTACATTGATTTGTTTCTTTGCTGAATGAAGGAATGAAAGTATAGAATACTCAATGTTCGTTATGAATGAGCAGTTGACTGAAACTGCTCTGAACTCAAATACGGGGAAACAGAAACCACTGAAGATTTTTTCGCACACTTCCAGTCAGATGAAAATCTCTTTAAATAGGAGGTAAGCTTTCGGTCAGTCGACTGACCGAATGCTAAGCTACTATGACTGGAAGTGTGTGGTGACTTTTTCCAGTTTTGCATTTTGCCTCCCGCAACTTCACTAATCGATAATGGGTGTGCGGTAGATTCTGCCTATGATTGCATTACAATAAAAGAGGTACTGTAACTCAATCTCTCGCTCACTTGTCATTGTGACTATAATATGTTATATTAGGATTGAGAACATCAACACTATTAACTCCTCACTATCCATCCCAATCTATCCTGGGAGCTGCTCCAATGCAGCAGGGTTGCAGATGACCATGGGGTTCTTCCCGTTGTCTCCAATACGTGTGTCTGCCTCATGCAGTGCCCGTGTGACGGCCCGTGGGAGGGTGAGTCCTTTGGTCCAGTCGTGGGCAATGTACTGGTGATACGGATCGTGGGAGCTCTCTAGCTTCTTGGAGCGGATGTAGCTCAGCATGATACCAAACGTGAAGAAACTAAACATACCTACCATCAGTAGAACATACACAAATCCCTGAGCTTGAGCCTTAGGTATAGCCCCGCCCACTGGGAGAACGACCTGCTGGGTAGTGTAGTTCTGAGAGAGTACTGGGACCAGTAAACCTGTGCCGTTCAGACATTGCTGTAGGAAGGACAGCAGGAGAGTCTGCAGCTCTGTGCCATTTAAGTGCAGCATTGCTGATCTCTGCTGGTTGTGGAAGGGAACTGCTGCTCTTGTCAACTGATGAGGGAGGAGAGCCTTGGTCAGTACACTCGCCCAATgagacacaaacaaaaacacacattgcAGAAAGTCTAACACAGACACGGCACAGCCAATATGACAAACACAAACTAATGCTGCGGAACTCACTTCTCTGTTCTCTTGCTGTGGATAAAAATATTTTATCTCTAGTTGCTCCGATGGCTTCTGCCTCAGTTTCTGTTGACCTGCCTGAGAAAACTTGGTATTACACATCTAAGATACAAGTGTAGGACAAATTATCAATCACAGAAGAAATATGTAAAATGAAGAGTGCAAATACCTTTGGAAGCTCTCTGTAATTGTTGCTCACAAAGGTGCTAGTAGAAGATGGTGACCTTTTTAAATAGAGTACTCCGTTGATTTCCGTTGATTTCGAGGGGAAAAACTGTAAGGTAATCTGGTTCCACCTACACTTCCACTCCAagacttctctttctctcgctctctctctcgctctgtctctctctctccctcacacacatacacacacacacactgacggaCACATGAGCTTAACCACGTCAACACGTTTAATGAGCCATAGATGTCATGTCAGAGGTCAAGGTCAGAACCTCCCCATGGTATGGTAGTGGGGCTGTGTGATTTACTGTTATGACCGCAGGACACTGTGGTTCAGTTACGGACACTTCAGTACAGTTAAACCTGTGTGGTAATAACTCTGCTATAGTTGTCTCCATAGCTATGATCACCTGGTCAACATGCTTCAGTGTTGTAAGGTGTATGGTCAGTTTTGTGGTCACTTCTGGATTGTCATATCTGTATGTATGGTCAGTCTTACGTTCATGTGTGGTTGTGATGGAGCTAGGTTGTAGAACAAAGCGGCATTCAGACTGGAGGGAGAGTGGCGAGATTAAGTTACAACAGGAGCAAATCACAAATCACCTCCAAACGTCCTAGCTATCCCACTGCTtttccgtgtgtgtgcgtgcgtgcatgtgtgtgttacctagagACTCACCTTCAGGGGCCTAAGCAGTCCAGCGAACATTCAGCATTGCAGACAGAATGAACAACATATAATTGTGTCAATAGTCCATTCTGCATGATAAACATGTCCCAGTGACTAGACCCTAGGCATTCTGCATCTAAGGAGTCCTTGGGACAATCTCATAATTTGACTATGCCTTTAGATGTTTGGTGTAAGCCTATACAAAACAAATATCCTATAATCCTGTTGTATCTTTTTCTATGACCTCTGAAATAATTGTATAACTTATCATTATTGATCATATCTTACTATTGCTGCGATGAATATCAAGGTTGCGTGGTCTAAATTCTCATCCGTTAGCAGAGTTTGCCACCAGCTGGCCATTTTGGATTAGTTTGTGACAGGACCGCTGGCTCTGTTGCAAATGTTCCATTCAAGACGGATACATCCTTCAAACACAAAAGGAAAAGTGCCGAGTTTGTGAGCACATTCGATTTGATTTTCCTTGCTCCATATATGACATTTAACATTCTGCCTACAAACACTATAAAGAAATATACAGTGGCGGGTTTAAACGATCAGACTCAACATTCATTACATTCCTATAGGTTGATCATGTCAaatgcagtttttttttcttcatcgctttggtactattttcacaaGAGTGTGATGAAATTTCACAACTCAAAACAGATCATCGAAAAggctgttttttttccccctcaaaacattaagcacattttcaattgactaagtAAAACAATCTTAACAAGTGACCTTTTCACCAAACCTAAATCCgtgtttcatctagaaatacctttcatataaagtaattgcctttcacaatgcaatgTGCTCACAATACTTTTAATATGACCCTCTTCTCATTTGTGTAATGAATACGATGGGAGACAGAATGCTGGTTtaaagcgcagggcgcagcaggtgtttaattgtaaaggaccacaggaagaggcaggtagctgggtccaggggcaggcagaaggtcatacacaggggctccaaaaaggtaacagtacaggcagggaaaggcTAATAACGTAGTCCAGGATCAGGCAAGAGGTTGATGACAGGAAATCCGATAGGAAAAAGGTCAGGCAGGGAATAGGTAAATAGGCGTCGTTAGTGAGGATGGCCAAAAAACATATTGGCATTAAATGGAGTCGGGAGTTTAGAAGACTGCGCGATGTAGAATGAATGAGAACCCTAATTCGTCCCGTGTTACATCTCCAATTTGCCGCGGGCGTCTGGTACTCTAAAAGGTTGGACAGGGTTGGCAGGTCTGAAATACAGTTGACCATCACTTAATCTAACTGCGCTTAATGGTTAACCACTTAACCGTTTGGTACCCTATAGATTTTAAGATTTTGTCAACTATATATGGATTTTGAGAACTACAGAAGTAAAATGTctgtaaagtataaacatctaaattACATGTATcgtacatgataaccatacataatgactactcaTTATTGCTAATTGATTTCACATAGTGTTAACCACAATTGGTCACCATATAAAAGGGTGGGTGTCAACATTCGCAATTTCTTTCAACGTGGAGCAGGATAGACagcaagggagaggaagaaatcagagaggtgggcatggaccctatcaaagaggtcaaagaggtggatATGGGCCCCATCTAAGAggtggacaacagagagagggtaGCAGATGGCAGGGAACTGTTGTCTAGTGAAATCCGGGCCATCGTCGTTGACCATGTGGTAAACAGAGGCCTTACTATGGCAGAGGCTGCCAGATTAGTTCACCCTAATCTGAAAAGATCAACTGTCAATTTGATCATGAGAACATTTTGCCAAGAAAACCGGTAAGTTTGTAGGATATGCACCATTACATTTACAGCAAGTTACATTACAATATGTATGTAAATTCACAAAACATGTTACAGTATTCTTACAGTATGATCTATTGACAGTACACACCGTTCTACCCTCAGAATTGACAGAAGACCCCATGGGGTGGCTGTGGCCGTGTGCTGACAGACGAGCAGGAGTGCGCAGTGGTGGAAATGaagaaaaccgtaacataaCTGGTGACTTTTGAGAGAAAAAACGACCGGGTTTAACAACTGCAGCCGAGTATGCTCAGtggGTGATGGTGCTTGATGCTGCTGTGAACCATAACTCCCCCGCAACTGCCGTGCAGAAATAACAGCCCACAGACAGAAGCACAAGATGGAACTTCACTCAATTTTcaagagcagtggtcaccaatgGTTGATCTCCAAACATCTCAGGGTGCTGGCGGTAGGTGCACCCCGTTTACGAGGTGGGTAGGTGAACTGCTGCTATTTTGAACCATtacatgtgtctgaaggtacaaactctgccttTCCGgcgggcccagagagcaaatcaattGCGCTATAggtctaccgctggccaatcagatggcCGCGTCTGTAGTAacatagcaggcataaaagaaagctacagcaaagttgatactgtgagatttcaaaacatttaaaccatgactagagagagagactgtcaatgaACACAGCAAAGATATGCTGTTTATGTTCTTACTAAttactgtcaacactttgtattcaacattttTATAAGGAATAAAATGCTAATTCTTCCAATTTctactcagcactacaacaagcATTGCAGCAGTAAcgaatgagtaggaaagtgtatctataggcttgcgttgttattattagcggcttgggCTTTTTTTTATATAACAGAATATTTCAccttctctgttcataggagtaacagCATGAATTTGTGCATAAGGCAGTGTAACTCGAGTTtagccatcagctggaagacggtgtccctttttggtcaatGTCAGTGGAAACTCACATAGGATGTACCCGTGACTagaactattcaacgctggtctgaccaatcggaatcgacgattcaagattgttttgatcacgcgaactgggaaatgttccgggcagcctcagagaataacatcgattttatacgctgatttggtgagtgagtttataaggaagtgcattggagatgttgtacccagtGTGACTATTAAAACATACCCTAACCAGAGACTGTGGACGGATGGCGGAatttgcacaaaactgaaagcacgaaccactgcatttaaccatgtaaagatgactgggaatatggccaac

Function

symbol description
dnajc28 Predicted to be involved in Golgi organization; Golgi vesicle prefusion complex stabilization; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be part of Golgi transport complex. Orthologous to human DNAJC28 (DnaJ heat shock protein family (Hsp40) member C28).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K19373 DNAJC28; DnaJ homolog subfamily C member 28

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560639.2 True 6876 mRNA 0.45 4 35187825 35195853

Neighbor

gene id symbol gene type direction distance location
LOC110488391 LOC106582385 coding upstream 3823 35180650 ~ 35184002 (+)
LOC110488375 LOC106605227 coding upstream 7359 35172574 ~ 35180466 (+)
lypc LOC106584559 coding upstream 34190 35151760 ~ 35153650 (+)
LOC110488356 ccdc105 coding upstream 36118 35150511 ~ 35151707 (+)
LOC110488331 LOC106582353 coding upstream 46349 35127970 ~ 35141476 (+)
LOC110534843 LOC106605230 coding downstream 9328 35205181 ~ 35239245 (+)
LOC110488465 psmc4 coding downstream 98246 35294099 ~ 35307452 (+)
LOC110488474 LOC106605235 coding downstream 129423 35325276 ~ 35334443 (+)
LOC110488522 lsr coding downstream 200482 35396335 ~ 35405972 (+)
LOC110488530 LOC106605238 coding downstream 211066 35406919 ~ 35431905 (+)
G136086 NA non-coding upstream 29788 35157832 ~ 35158037 (+)
G136079 NA non-coding upstream 42379 35143735 ~ 35145446 (+)
LOC110533739 ppt2a non-coding upstream 63760 35122803 ~ 35127514 (+)
G136055 NA non-coding upstream 85750 35101843 ~ 35102075 (+)
G136044 LOC106605219 non-coding upstream 98493 35087279 ~ 35089332 (+)
G136097 NA non-coding downstream 3489 35199342 ~ 35200486 (+)
G136144 NA non-coding downstream 93524 35289377 ~ 35289644 (+)
G136199 NA non-coding downstream 195215 35391068 ~ 35391284 (+)
G136201 LOC106584099 non-coding downstream 197455 35393308 ~ 35393788 (+)
LOC110488281 apom other upstream 187270 34984948 ~ 35000555 (+)
G135920 LOC106605214 other upstream 215024 34972449 ~ 34972801 (+)
G135916 NA other upstream 215894 34971640 ~ 34971931 (+)
LOC110488639 LOC106605005 other downstream 589838 35785691 ~ 35788114 (+)
LOC100653444 LOC106584591 other downstream 659296 35855149 ~ 35865269 (+)
G136994 NA other downstream 786979 35982832 ~ 36037741 (+)
G137058 LOC106605156 other downstream 903758 36099611 ~ 36100277 (+)
LOC110488849 LOC106605147 other downstream 1186039 36354883 ~ 36405310 (+)

Expression


Co-expression Network