LOC118939544 (LOC106605239)


Basic Information

Item Value
gene id LOC118939544
gene name LOC106605239
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35441730 ~ 35470406 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036947069.1
ATTCATTTCCCTCCGTCAGAGAAGGCCCCTGCAGCAGCATACAACATCACCTTCAGTCCAGCAGAGATAACACCCCAGAATGGACTATGTGCTGTTATTCCATGTTTGTTCACTCACCCTGATGACTTCCTTGCTAGCATAGCAATGTGGCTTAAATGCCCTGATGCACGATGTTCTATTAAAGTCGAAACTGACTCTATTTTCCACTCAAGAAATTCCTCTATAGCTCAGGAGGGTTATAGAAGGCGAGTAGCACTACTGGAGACAGACCTGACAAAGAAGAACTGCAGTATGATCATCAACGACATCACTAAGACTGATGACGGAGACTATCAATTAAGACTGTCCGGAAAATTGAACACTGGCAATATAAGTCAATTTACATACCAGACGAAACTGAAAATGGCAGTGAAAGCTCTGACCCAGAAGCCCTCAGTGTTGACTCCTCCTCTGACAGAGGGAGAACCAGCGACCCTGACCTGCACCGCCCCGGGAATCTGCTCTGGAACTCCTCCTAACATCACATGGAcatggagagggacaggagacaacatcactgagctcagagacaacaccaccacacaaAGGAGAGAGGATCTGACCCGCGTCACAACAACCCACTTCTCAACATTGACCTTTACACCTTCAGCAGAGCACCACACCACCAAGGTCACGTGCCAAGTGACATTCAAAGGGAACATCACCACTGAGGAGACAGTGACTTTGAATGTGACTCATGTGAAGGAACCCAAGATCTCTGGTAGTAACACAGTGAAAGAGGGTGATACTCTGAATCTGTCTTGCTTTGTTGACAGctacccaccaccaccatctatcaCCTGGAGTAAGAATGGGACAACAGCTTTGGAACAGAATAACTCTGGACTGGCCTCTCTCACCATCTCGAACATGACAAGAGAACATGCTGGGGAGTATGCGTGTAAAGCTCAACAACTCAACAGGACTCTGACAGCTTCCATTGATGTCACTGTGATGTACCATCCTGTGATTCTCAATGCTTCTGGGTGTGTCATCCAGGCAAAGGtcatgacctgtgtgtgtgtcagccaggGGGTTCCCTTACCTCTCATAGGCTGGCTTAACACTGAGGAGTACTCCCTCACTAAATCAGTGTTGAGGTCCTCAGTGAACACCACCATCAGGATGCATGTCGGAAACCACACCAACACTACTGTGGAGTGTGTCAGCACAAATGAAgtgggcagagtgagagagaagctgCAAGTCACCCAAAAAGAGAGCCAAGGAAAGCGAGGAGAGAAAGTATCTAAAGACATCTTGGCTCTGCTGTTGAACCCACCACTGATTACTGCATTTGTGATTGGTGCAGCCTGCTCATCCACCATCTGTTGTATCATCCTGTGTTTGACAGGGAAATGTAAAAGATGCAAAGAGAGGATCCCAAAGGACTCAGACTCCAAAAGCCCTTTAACGAAACTGGAGATGGTGGCATGTGAAGACCAACAGACAAATGCAGGACAGGCTGTGCGGGGCGAACAGACCCCTCTGCAGGTGGTGCTGATGGAGGGAGCTGAAAACACAGGACCCCAGACCAGTGGAGCTGCAGGAAACTCTGCCAAAGGGGAAGAACCTCAAGATGTGCACTACGCCACTATCAACTACTCCCAACTGAAGAAGACTCCTGAGGAGGCAGAGAAGAAGACCACCACCTCAGAGTCAGAGTACGCCAAAATCAAACAAGAGAATAAGAAAGAAGGGTAtgaaggtggaggagaggggagtggagtgaTGTACGAGGAGGAGAACGAGAATGGTAAGCCAGCAGCAGAGACATATGAGAATACAGAGCTTTACTCCAACATCAAGGCTATTATGGGTGGTGAGTGACACAGCAATTTTCACTAGAAACATGGGGGATAGCATGCAGTATTATATAGCCATGTGTTCCTTTATCATTTTTCTGAATCCAGATTGAATGTTTTATGTTGATACTGGGACTTTTGCTCAACTGAAACTACTGTAGTTTTGGTGTTGTTTCCTCATGTGCTGAAACAAGTTTGAATGTTTTATGATAATACAGAGATGTTGTTTAATAACTGAAACTACTGTAGTTAATAGTTTTGGTAAATgatttattttacagccctgtgtcagatggtactgtatgtatctggTGGTTGTACATTTTCAATAAGAATATTTTCTAGTTGTACATAGAAGCAAGTTTTGGTCAAGATTTTATAAAGTTTTTCAAGGAAGAGTCATTTTACTTTTGTAATGACAGTGTTTTGTCACCAAGGGGAAGGACTGACACATATGTGGTTGGGAAAAGTAGAGGTCAAGCCATTTATTTTTTCTTCTCCTTTTTCCTTTCATTTTGCATTTTGATTTGACAAGTGGGTGGGGATATTAGGTAGTATGTGTGGATGTAATCAATATATTTCTGTAAATAGAATACTGATACACGGTTGAAAATGTTGGCAAAATGTCATTCAGAATTCTCATTTTGGGCTAGCCAGAGAGCTCAAATTAAAGAATCAAGAAAAAAAGTACATTATGTTGTTTTCTTTAGACAgcttggttgtttagcaacaaaacagaTGTGTACACAACTATGTGGTAAAACAGCTGGGTTGGCtgagattgttgacaacatgtcacatatttcgtctccaatgtttaaaaatataaatacatttgcacaatgagcacttgttgtctctcaaatacggTGTTACAGTTGTTTGGTTAGCTAGGTAGTATTTTTTTGTGTGCCATATTAGCAAATAACACCCCCCAAAAATATGACATTTCAATAACAACATAAAACTAGCTGAAACAAGCCACCTACTATTCGCCAGATGGCAGCTTTGTGTCATTGTTGCTAgatatctggccatccagaatcaccaCAACATGTGGtcttctgccccattgaagcatGTCTATCGTTTTCATGACATTATCAGCTAACCCATTTATGAGAATATTTTTCTATTCATAAGTGTGCATTATTGCAGTATTGTTTTATATTGAGGCACTACCTcaatcttt
>TU156842
GTCAACAGGAAGagagagcacacagagagagtagacacagacagagatagtgaccattagagaaagaggagaaagaggagagagacccCGGTGTTGTGGTTGATTCATCGAGGCAGTAGAGGCAGGATGTGGGTCCTCATCTGGGCagctctacttctctctctgacagagaGAACCACATGCCAAAAGAAGGCCCCTGCAGCAGCATACAACATCACCTTCAGTCCAGCAGAGATAACACCCCAGAATGGACTATGTGCTGTTATTCCATGTTTGTTC
>TU156850
cctgtgtgtgtgtcagccaggGGGTTCCCTTACCTCTCATAGGCTGGCTTAACACTGAGGAGTACTCCCTCACTAAATCAGTGTTGAGGTCCTCAGTGAACACCACCATCAGGATGCATGTCGGAAACCACACCAACACTACTGTGGAGTGTGTCAGCACAAATGAAgtgggcagagtgagagagaagctgCAAGTCACCCAAAAAGAGAGCCAAGGAAAGCGAGGAGAGAAAGTATCTAAAGACATCTTGGCTCTGCTGTTGAACCCACC

Function

NR:

description
sialic acid-binding Ig-like lectin 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036947069.1 False 3036 mRNA 0.43 7 35466266 35470406
TU156842 False 279 lncRNA 0.61 3 35441730 35466376
TU156850 True 271 lncRNA 0.42 2 35467897 35468365

Neighbor

gene id symbol gene type direction distance location
LOC118936740 LOC106582469 coding upstream 12208 35445101 ~ 35454058 (+)
LOC118936739 LOC106605239 coding upstream 22236 35442141 ~ 35444030 (+)
LOC110488530 LOC106605238 coding upstream 34361 35406919 ~ 35431905 (+)
LOC110488522 lsr coding upstream 60294 35396335 ~ 35405972 (+)
LOC110488474 LOC106605235 coding upstream 131823 35325276 ~ 35334443 (+)
LOC118939545 LOC106582469 coding downstream 1717 35472123 ~ 35477382 (+)
LOC118939546 LOC106582469 coding downstream 22411 35492817 ~ 35498083 (+)
LOC110488566 LOC106605239 coding downstream 36251 35506657 ~ 35512190 (+)
LOC110534853 NA coding downstream 55680 35526086 ~ 35540448 (+)
LOC110488573 LOC106605190 coding downstream 77714 35548120 ~ 35554239 (+)
G136202 NA non-coding upstream 71083 35394744 ~ 35395183 (+)
G136201 LOC106584099 non-coding upstream 72478 35393308 ~ 35393788 (+)
G136199 NA non-coding upstream 74982 35391068 ~ 35391284 (+)
G136144 NA non-coding upstream 176622 35289377 ~ 35289644 (+)
G136554 NA non-coding downstream 103718 35574124 ~ 35574329 (+)
G136561 NA non-coding downstream 107552 35577958 ~ 35578281 (+)
G136573 NA non-coding downstream 115623 35586029 ~ 35586280 (+)
G136583 NA non-coding downstream 124129 35594535 ~ 35594840 (+)
LOC110488391 LOC106582385 other upstream 282270 35180650 ~ 35184002 (+)
lypc LOC106584559 other upstream 312616 35151760 ~ 35153650 (+)
LOC110488281 apom other upstream 465711 34984948 ~ 35000555 (+)
G135920 LOC106605214 other upstream 493465 34972449 ~ 34972801 (+)
G135916 NA other upstream 494335 34971640 ~ 34971931 (+)
LOC110488639 LOC106605005 other downstream 315285 35785691 ~ 35788114 (+)
LOC100653444 LOC106584591 other downstream 384743 35855149 ~ 35865269 (+)
G136994 NA other downstream 512426 35982832 ~ 36037741 (+)
G137058 LOC106605156 other downstream 629205 36099611 ~ 36100277 (+)
LOC110488849 LOC106605147 other downstream 911486 36354883 ~ 36405310 (+)
LOC110488465 psmc4 coding upstream 134278 35294099 ~ 35307452 (+)
LOC110534843 LOC106605230 coding upstream 202485 35205181 ~ 35239245 (+)

Expression


Co-expression Network