LOC110488573 (LOC106605190)


Basic Information

Item Value
gene id LOC110488573
gene name LOC106605190
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 35548120 ~ 35554239 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021560843.2
taggaatgtagtgaaggaaaagtaaaagctgtcaaaaatagaaatagtgaagtacagataccccccaaaaaatacttaagtagtactttcaagtatgtTTACTTCAGTACTTTAAACCACTGCATGTTACAAACAGCCAATCTTAGAAATCTTATAGAAACTTTCTTATAGTGAAATAAAACTGCATCTGAATATAAAAGGCAAGGGGATTGTAGTGTTAACCAAGGTTGGGTGATGGTTGTGGATTGATGGGGTTATAAGGGTTGGTTAATGGGTTTGTGTTGATTATGGTCCATACAGTACAAGCATGGCTGGACGATATAGTACAGAGGAACTTCCTGGATTGCAGCACCAGGTTAGAGGGAGGAGTAACAGACTGGGGACATGAAGGGACAGTTCACACCCATCAGAGACTCACACAGGGCTCCTGATCAACAGGAGGAGAGAGCACTCAGAGAGAGGTAATGTGCTTTTTTCTGCATGGATCAAAAGACAAGCTATTTAACCATTATAGAGTTTTGTTTCGTTACATTGAATGACTGTTAAAACTTGATTATGACTAAGTAATATAATGGTAATATTCTATTATTCATTTAGGGCATTTGAACATATTGCTTCAAAAGGCTTTATATAGCCTAGGTATAAAGATTTCTGAATGCAGGTAAATATATTTATGAGCAGTTATTAATTAGCGCCTATGTTGAgcattatattgtattataaggAGTCACTCATAAGGAGTTATAAATGGGCTTGTAATGCATTATGAAGAAGGCATTCATATGAACCTTGAACATAAATGTTTCTTTGACATCCTCTCTAGGCATTACAGAAAAATACATCTTAGTTGAATAAAAGTGTTAAGAAGGTTGTTATGAATGCCACTGTAGCACTCATAAAGGTGTAATGAAATGTTAATGTCCGATGTGTATTGCTATATGTTGTTAATATCACAACACCATTTCATATTGTATTTCACACTTGTCTCCTGCTCCATACcagtagacacagacagagatagtgaccattagagaaagaggagaaagaggagagagacccCGGTGTTGTGGTTGATTCATCAAGGCAGTAGAGGCAGGATGTGCGTCCTCATCTGGGCagctctacttctctctctgacagagaGAACCACATGCCCAACTCTAACCCAGAAGCCCTCAGTGTTGACTCCTCCTCTGACAGAGGGAGAACCAACGACTCTGACCTGCACCGCCACGGGAATCGGCTCTGGATCTCCTCCTAAAATAACATGGAcatggagagggacaggagacaaCAACACTGAGCTTcgagacaacaccaccacacagaggagagaggacctgACCAACGTGACAACAACCCACTTCTCAACTTTGACCTTTACCCCCTCAGCTGAGCACCACAGCATGATGGTTTCGTGTCAAGTAACCTTCCAGAAAACATATACAATTGAAGAGACAGTAACTTTGAATGTGTCATATGTGAAAGACCCCCAAATAACTGGACATGAAATGGTGAAGGAGGATGGTACCCTGGAACTGACCTGCAGTGTTGACAGTTACCCTCCATCTGATATCACTTGGAGTAAGAATGGGACAAGTCCCTCACTTCAGAATTACACTGAAAATGCCAATCTCACCATCTCCAATGTGACAAGAGAACATGCTGGGGAGTATGTGTGTACAGTTCATCAccacaacaggacaatgacagcTTCCACCGTTGTCACTGTGCTGTACCTTCCTGTGATTCTTCCTGGCTCTGGGTGTGTGGACCAGGCAGAGGtcatgacctgtgtgtgtgtcagtcaggggGTTCCCTTACCCCTCATAGAGTGGCCACTGCTGGAGCTCAACACAGAGAACACAACGTCAGTGTTGGGTTCCTCAGTGAACAGCACCATCAGCCTgcttgttggaaactacaacaACATCACTGTGGAGTGTGTCAGCAGCAATGTGGTGGGTGTAGTGAGAGAGAAGTTGCAGGTCACCCAAAATAAGAGCCAAGAAAAGCAAGAAGATAAGGAATGGGAAGACCTTATAGCTATGCTGTCGGACCTAAAACTGATTGCTGCATTTGTGATTGGTGCAGCCTTCTCAGCCACCATCTGTTGTATCATCCTGTGTTTGACAGGGAAATGTAAAAGACAAAAGAAGAGGATCCCAAAGGATTCCAAAAGCCCTTTCATAAACCTGGAGATGGTGGCATGTGAAGACCAACAGACGGAtgcaggacaggctgtgggggGCGAACAGAACCCTCTGCAGTTGGAGCTGAGAGGAGGAGCAGAAAACGGAGGGACCCAGACCAGTGGAGCTACGGGAAAATTTGACACAAGGGAAGAACCAAATGAAGTGGACTACGCCAGTATCAACTACTCCCTGCTGAAGAAGAAGACTCCTGAGGAGGCCGAGAAGAAGACCACCACCGCAGAGTCAGAGTACGCCAAAATTAAACGAGAGAAGAAGAACGAAGGGGATGaaaatggaggagaggggagtggaatgatgatgatgatgatggggaaggatgaggagaaagagaatggtaagccagcagcagagacagaTGAGGATACAGCGCTTTACTCCAACGTTAAGGCTATTATGGGTGGTGGAGAGTGACGCACATATTTTCGCTAGAAACATGGGGGATAGCATGCAGTATTGTATAGCCATGTGTTCCTATATCATTTTTCTGAATTCAGATTGAATGTTTTATGTTGATACTGGGACTTTTGCTCAACTGAAACTACTGTAGTTTTGGTGTTGTTTCCTCATGTGCTGAAACAAGTTTGAATGTTTTATGATAATACAGAGATGTTGTTTAATAACTGAAACTACTGTAGTTAATAGTTTTGGTAAATgatttattttacagccctgtgtcagatggtactgtatgtatctggTGGTTGTACATTTTCAATAAGAATATTTTCTAGTTGTACATAGAAGCAAGTTTTGGTAATGTTTTTGTAATGTTTTTCAAGGAAGCGTCATTTAACTTTTTGTAACGATTCTGTTATGTCACCATAAGGAAGGACTGACAATGACGTGGTTTGGATAAGTCGAGAGGTCAAACCATTTCTTGTTTTTCTCCTCTttcatttcatttatttttatggGTGGGGATTTTATGTAGTATGTGTGGTTGTAACCAATATATTTCTGTACGTAGAATACTGATATACTGCAGTACATTTTGGCAAAATGCCATAAAGAATTCTCATTTTGGGCTAGCCAGAGAGCTCAAATTAAATAGTTAAAAAGTACTTAAAAGTTGTGTACTATAGATGGGTTGGTTGTTTGGCAACCAAACAGACGAGTGCACAACTATGGGGTAAAACAGACGGGTTGGTTTCGAATGTTGACGACATATTAACTATATTTCATCTCCAATGTTTTTtgaaaatataaatacatttgcacaa
>TU156857
TGATCAACAGGAGGAGAGAGCACTCAGAGAGAGCTCTAACCCAGAAGCCCTCAGTGTTGACTCCTCCTCTGACAGAGGGAGAACCAACGACTCTGACCTGCACCGCCACGGGAATCGGCTCTGGATCTCCTCCTAAAATAACATGGAcatggagagggacaggagacaaCAACACTGAGCTTcgagacaacaccaccacacagaggagagaggacctgACCAACGTGACAACAACCCACTTCTCAACTTTGACCTTTACCCCCTCAGCTGAGCACCACAGCATGATGGTTTCGTGTCAAGTAACCTTCCAGAAAACATATACAATTGAAGAGACAGTAACTTTGAATGTGTCATATGTGAAAGACCCCCAAATAACTGGACATGAAATGGTGAAGGAGGATGGTACCCTGGAACTGACCTGCAGTGTTGACAGTTACCCTCCATCTGATATCACTTGGAGTAAGAATGGGACAAGTCCCTCACTTCAGAATTACACTGAAAATGCCAATCTCA

Function

NR:

description
sialic acid-binding Ig-like lectin 11

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021560843.2 False 3436 mRNA 0.42 7 35548120 35554239
TU156857 True 513 lncRNA 0.47 3 35548548 35551647

Neighbor

gene id symbol gene type direction distance location
LOC110534853 NA coding upstream 7672 35526086 ~ 35540448 (+)
LOC110488566 LOC106605239 coding upstream 35930 35506657 ~ 35512190 (+)
LOC118939546 LOC106582469 coding upstream 50037 35492817 ~ 35498083 (+)
LOC118939545 LOC106582469 coding upstream 70738 35472123 ~ 35477382 (+)
LOC118939544 LOC106605239 coding upstream 77714 35441730 ~ 35470406 (+)
LOC110488583 LOC106582465 coding downstream 12963 35567202 ~ 35573160 (+)
LOC110488622 LOC106605163 coding downstream 189988 35744227 ~ 35751886 (+)
LOC110488629 LOC106605006 coding downstream 205898 35760137 ~ 35777993 (+)
LOC110533750 LOC106584585 coding downstream 229716 35783955 ~ 35785664 (+)
LOC110488639 LOC106605005 coding downstream 231658 35785691 ~ 35788114 (+)
LOC110488522 lsr non-coding upstream 142176 35396335 ~ 35405972 (+)
G136202 NA non-coding upstream 152937 35394744 ~ 35395183 (+)
G136201 LOC106584099 non-coding upstream 154332 35393308 ~ 35393788 (+)
G136199 NA non-coding upstream 156836 35391068 ~ 35391284 (+)
G136554 NA non-coding downstream 19885 35574124 ~ 35574329 (+)
G136561 NA non-coding downstream 23719 35577958 ~ 35578281 (+)
G136573 NA non-coding downstream 31790 35586029 ~ 35586280 (+)
G136583 NA non-coding downstream 40296 35594535 ~ 35594840 (+)
G136593 NA non-coding downstream 46524 35600763 ~ 35600962 (+)
LOC110488391 LOC106582385 other upstream 364124 35180650 ~ 35184002 (+)
lypc LOC106584559 other upstream 394470 35151760 ~ 35153650 (+)
LOC110488281 apom other upstream 547565 34984948 ~ 35000555 (+)
G135920 LOC106605214 other upstream 575319 34972449 ~ 34972801 (+)
G135916 NA other upstream 576189 34971640 ~ 34971931 (+)
LOC100653444 LOC106584591 other downstream 300910 35855149 ~ 35865269 (+)
G136994 NA other downstream 428593 35982832 ~ 36037741 (+)
G137058 LOC106605156 other downstream 545372 36099611 ~ 36100277 (+)
LOC110488849 LOC106605147 other downstream 827653 36354883 ~ 36405310 (+)

Expression


Co-expression Network