LOC110489269 (LOC106605108)


Basic Information

Item Value
gene id LOC110489269
gene name LOC106605108
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 38861507 ~ 38973957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021561946.2
TCCATttgggcagagacagagagatttggCTGTCAAGGGTTTAACCCCACAAAACTACAATTCCCAACGCAAGGGAGCATTTTACCCAGCGGGTTTGTGAATGGAGAATCCTGCAAGATGGCGACTAATGCAACTGCTACAAACTTACCGTCTTTTGATTGTCCAACATGGGCAGGCAAGCCCCCTCCAGGACTCCATTTGGACGTGATGAAAGGTGACAAAATGGTCGAGAAACTGATCATTGACGAGAAGAAGTACTACTTATTCGGGAGGAACCCGGACATGTGTGATTTCACCATCGACCACCAGTCATGTTCACGCGTGCATGCTGCCCTGGTCTACCACAAGCACCTGAAGAGGGTGTTCCTTATCGATAACAACAGCACGCATGGTACCTTCCTGGGACACATCCGCCTGGAGCCCAATAAGCCTCAGCAGGTCCCCATAGACTCCACCATGTCGTTTGGGGCGTCCACGCGAGCCTACACCATCCGGGAGAAACCTCAGAGCCAGCAAGGAACCAACTCCGCCACGGGGGACAGCAAGGccggagaggatgaggaggggtcTAAGGGTCTCTTAGGGTTACCAGAGGAGGAGACCGAGCTAgagAACCTGACGGAGTTCAACACGGCCCACAACAAGCGCATTTCCACCCTGACCATCGAAGAGGGCAACCTAGATATCCAGAGACCCAAGAGGAAGAGGCGGAACTCAAGAGTCACCTTCAACGAGGACGATGAGGTCATCAACCCGGAGGACATTGACCCCTCAGTGGGGCGCTTCAGGAACATGGTGCAGACTGCTGTCGTCCCTATAAAGAAACAGAAAATGGAGAGGCACAGCTCTCTTAGTATGGATGACGTTGTGACGAGGCGCATCCACAACTACACCTTCGGCGGCGGCCTTTACGGGGACCTGCCACCCACCAGCCACGAGGGCCACCCTACTGGGCCCCCGAGCGGAGCCACTATCCTGGGCGGTCTCCCTCTGCCCTTCCCCAACCCGGCCCCAGAGGTGAACCTGGCCCCGGACGCCCCCCAGCCACCTGTCACCCTCAACCCTGTCCCCGTCACAGGCCCCTATCCCTCTGAGGTCCTCAACGAGCCCCGCAAGAAAAAGTATGCCAAAGAGGCATGGCCAGGCAAGAAGCCCACCCCCTCCCTACTAATTTAACCCTCTCCCTACACTACGGCGCTTTCTCAATCCGTCTTTCCTCTATTCCTTGTGTCCTCTCTCATGCATTGGAGAAGATCCAAGGTGTTTCCTCTTGGATCTTTTCCAATGTATTTTGAGTCTGAGGCGAGAGGACACAAAGAATCCAGGAAAGCCAAATTGGGAAAGAGCCTATGTGGTGGAGGCAGGGCTGACTCTCAGGGTATGGGCGGAGACATCAGGGACCATGACCCGTTGGAGGCGGATCGATTTTACttataaaactgtttttgggGATTTAATAGTTTTGTCAATGTTTTCTACGTTACTTCCTCGTTCTCCTAAAGATTATCCCAAAGACTTGAGTAGTACATTCCATGAAGACAGAAACACCACTCCTTCGGGAGCTGAATGTTTGATGCGTTTTACAAATTAAGTcctatatataaaaaataaaaggcAGTTCTTAGCAGACCAAGTCAGTTGGTCAAGTAAGAGTAACTTGTGGCATAAATCGGTGTCCCATGGCCGTGATATATTATCTCTAATTGATAGTCGGGCATCGTGCAGGGAAACAAACACGAAGCGGATGTAACTTAGGAAAACAGCCCttatgttggaaacaaacattatgTTCTCATCCAAattcacatgtatttattttccaagctacagCGCAAGTATTACAGGAGGTTTTTAAAGGACCTGCTCCGTGTtatcatttttgccatggaaaaaaaacgttgcgatactggtatcatcacagCCTAATCGTTATATGGTTGGTCACTGTGAGTTCCATATTACTATCTCCACTTCCTTCTATACGGTCTCAGTATTGGTTTGAAGTTGTGCGTAGTATTTTTGCTCACTGTAAACATgagctttcggaaagtattcaggccccttgactttccacattttgagacgttagtcttattctaaaattggtgATTTTTTTCTTATCAATCTAAACAAAAAacccatgacaaagcaaaaacgtgtttttagaaattttacataattattcagaccctttgaagcacatttggcagcgattacagcctcaacttcttgggtacgacgctacaagcttggcagacctgtatttggggagtttctcccattcttttcggcagatcctctcaaggtctgtcaggttggatggggagcttcgacgtacagctattttcaggtctccagagacgttagatcgggttcaagtctgggctcttgctgggctcttgtcccgaagcctctcctgcgttgtcttggctgtttgcttagggtcattgtcctgttggaaggtgaaccttcgccccagtcagaggtcctgggtgctttggagcaggttttcatcaaggatctctctgtactttgctgcgttcatctttccctcaacccttactagtcttccagtccctgctgctgaataacatccccacagcatgatgctgccacaaccactcttcaccgtagggatggtgccaggtttcttccagacgtgacgcttgacattcaggccaaagagttcaatcttggcttcatcagacaagagaatcttatttctcatggtctgagagttgtgccttttactgaggagtggcttccgtctgctgagatggttttccttctgggaGATTCTCCTATCTCTAAAGAGGAACTCCCATTGGGTtcttggccagctctaggaaaagtcttggcgGTTCCTAacttcactgtgttcttggggaccttcagtcctgcaaacattttttggtgttcttcaacacaatcctgtctcggtactctacggacaatttcttcgacctcatggcttgggttttaCTCTGAaatgcaatgtcaactgtgggacctttttatatagacaggtgtgtttgtgcctttccaagtcatgtccaaacagttgaatttaccacaggtggactccaatcaagttgtagaaacatctcaaagatgatcaatggaaaccggatgcacctgtgctcaatttagagtctcatagcatacttatgtaaataaggtcaaactgttttcaccttgtcattatggggtattgtgtgtagattaaggaATGTTTTAAATGTAATCCTTTCTAGAATATTGCTTTAACATAACACTGGAAAAAgtcagtctgaatactttccaaatgcactgcattTCTTTTTTTAATATCTATTTGTAAAATAGATACAAGATGGATTATTATAGGAATTGACGTAAGCAGTTCAGAGTTTCTGAAAAATGTCATTTTCTAAAGACTGAATAGGACTGTAGGTTTATATTTTTACACTTCTATCAAGATGAGTGCCGTGAGGAGAGAATGTTATGTTTACTCGGTTTACATTCACAATCAATATcagtaatacatttaaaaaatgttaataGACTGCACAGAGTGTTTTTAAATGCTGTCAGCCCATTATCAGAAGATATCGGTATGACCTGTGAGTTGCAACTCTGCCTGAATGTTAGTCGGTCCTCTAGATGGCGATATGTACATTGTAAATTTGCCTGATCTGCGCCACCGGTCGGTCACATGAAATAAAAGGTGGTAAGGTTCTAAGTTGGTGCTATTTGCTGTTGATCATTGTTTTGCAGGCCTTTTGAAATGATTCATTTTTTAATATGGTACACATGGTCTTGCATCACAGCCATAAAAGGGCTCTCAAAATGGAGCTTCTTGATGTTAAAAGAACTGCGTCAGTTTTCACACCAGCCAAATAAATTCTTAGATTGCCCCCTTTACTGGTTAAGTAAACATAGCTCAAATATAACAATCCTGCAAAAGCCATGCTATTTGTATCAACTTTGTACAGATGGACAGACACGTGTGCCCAGAACTTTTGTCCCTCTTTTGGCTGATGATGGCTTTTTTATTCACATAATACACTGTAAATAAAAACTGAATTTTGTCACAAACATGTCTTTATGTACAGTTTATAGAGTAGTGTCATTTTTACGCGGTAGTAGGCCTATATCTTCAAACGCCACGATTTAAA
>TU161302
caaagggtctgaatacttatgtaaataaggtcaaactgttttcaccttgtcattatggggtattgtgtgtagattaaggaATGTTTTAAATGTAATCCTTTCTAGAATATTGCTTTAACATAACACTGGAAAAAgtcagtctgaatactttccaaatgcactgcattTCTTTTTTTAATATCTATTTGTAAAATAGATACAAGATGGATTATTATAGGAATTGACGTAAGCAGTTCAGAGTTTCTGAAAAATGTCATTTTCTAAAGACTGAATAGGACTGTAGGTTTATATTTTTACACTTCTATCAAGATGAGTGCCGTGAGGAGAGAATGTTATGTTTACTCGGTTTACATTCACAATCAATATcagtaatacatttaaaaaatgttaataGACTGCACAGAGTGTTTTTAAATGCTGTCAGCCCATTATCAGAAGATATCGGTATGACCTGTGAGTTGCAACTCTGCCTGAATGTTAGTCGGTCCTCTAGATGGCGATATGTACATTGTAAATTTGCCTGATCTGCGCCACCGGTCGGTCACATGAAATAAAAGGTGGTAAGGTTCTAAGTTGGTGCTATTTGCTGTTGATCATTGTTTTGCAGGCCTTTTGAAATGATTCATTTTTTAATATGGTACACATGGTCTTGCATCACAGCCATAAAAGGGCTCTCAAAATGGAGCTTCTTGATGTTAAAAGAACTGCGTCAGTTTTCACACCAGCCAAATAAATTCTTAGATTGCCCCCTTTACTGGTTAAGTAAACATAGCTCAAATATAACAATCCTGCAAAAGCCATGCTATTTGTATCAACTTTGTACAGATGGACAGACACGTGTGCCCAGAACTTTTGTCCCTCTTTTGGC
>TU161301
GGAGGCAGGGCTGACTCTCAGGGTATGGGCGGAGACATCAGGGACCATGACCCGTTGGAGGCGGATCGATTTTACttataaaactgtttttgggGATTTAATAGTTTTGTCAATGTTTTCTACGTTACTTCCTCGTTCTCCTAAAGATTATCCCAAAGACTTGAGTAGTACATTCCATGAAGACAGAAACACCACTCCTTCGGGAGCTGAATGTTTGATGCGTTTTACAAATTAAGTcctatatataaaaaataaaaggcAGTTCTTAGCAGACCAAGTCAGTTGGTCAAGTAAGAGTAACTTGTGGCATAAATCGGTGTCCCATGGCCGTGATATATTATCTCTAATTGATAGTCGGGCATCGTGCAGGGAAACAAACACGAAGCGGATGTAACTTAGGAAAACAGCCCttatgttggaaacaaacattatgTTCTCATCCAAattcacatgtatttattttccaagctacagCGCAAGTATTACAGGAGGTTTTTAAAGGACCTGCTCCGTGTtatcatttttgccatggaaaaaaaacgttgcgatactggtatcatcacagCCTAATCGTTATATGGTTGGTCACTGTGAGTTCCATATTACTATCTCCACTTCCTTCTATACGGTCTCAGTATTGGTTTGAAGTTGTGCGTAGTATTTTTGCTCACTGTAAACATgagctttcggaaagtattcaggccccttgactttccacattttgagacgttagtcttattctaaaattggtgATTTTTTTCTTATCAATCTAAACAAAAAacccatgacaaagcaaaaacgtgtttttagaaattttacataattattcagaccctttgaagcacatttggcagcgattacagcctcaacttcttgggtacgacgctacaagcttggcagacctgtatttggggagtttctcccattcttttcggcagatcctctcaaggtctgtcaggttggatggggagcttcgacgtacagctattttcaggtctccagagacgttagatcgggttcaagtctgggctgtttgcttagggtcattgtcctgttggaaggtgaaccttcgccccagtcagaggtcctgggtgctttggagcaggttttcatcaaggatctctctgtactttgctgcgttcatctttccctcaacccttactagtcttccagtccctgctgctgaataacatccccacagcatgatgctgccacaaccactcttcaccgtagggatggtgccaggtttcttccgtctgctgagatggttttccttctgggaGATTCTCCTATCTCTAAAGAGGAACTCCCATTGGGTtcttggccagctctaggaaaagtcttggcgGTTCCTAacttcactgtgttcttggggaccttcagtcctgcaaacattttttggtgttcttcaacacaatcctgtctcggtactctacggacaatttcttcgacctcatggcttgggttttaCTCTGAaatgcaatgtcaactgtgggacctttttatatagacaggtgtgtttgtgcctttccaagtcatgtccaaacagttgaatttaccacaggtggactccaatcaagttgtagaaacatctcaaagatgatcaatggaaaccggatgcacctgtgctcaatttagagtctcatagcatacttatgtaaataaggtcaaactgttttcaccttgtcattatggggtattgtgtgtagattaaggaATGTTTTAAATGTAATCCTTTCTAGAATATTGCTTTAACATAACACTGGAAAAAgtcagtctgaatactttccaaatgcactgcattTCTTTTTTTAATATCTATTTGTAAAATAGATACAAGATGGATTATTATAGGAATTGACGTAAGCAGTTCAGAGTTTCTGAAAAATGTCATTTTCTAAAGACTGAATAGGACTGTAGGTTTATATTTTTACACTTCTATCAAGATGAGTGCCGTGAGGAGAGAATGTTATGTTTACTCGGTTTACATTCACAATCAATATcagtaatacatttaaaaaatgttaataGACTGCACAGAGTGTTTTTAAATGCTGTCAGCCCATTATCAGAAGATATCGGTATGACCTGTGAGTTGCAACTCTGCCTGAATGTTAGTCGGTCCTCTAGATGGCGATATGTACATTGTAAATTTGCCTGATCTGCGCCACCGGTCGGTCACATGAAATAAAAGGTGGTAAGGTTCTAAGTTGGTGCTATTTGCTGTTGATCATTGTTTTGCAGGCCTTTTGAAATGATTCATTTTTTAATATGGTACACATGGTCTTGCATCACAGCCATAAAAGGGCTCTCAAAATGGAGCTTCTTGATGTTAAAAGAACTGCGTCAGTTTTCACACCAGCCAAATAAATTCTTAGATTGCCCCCTTTACTGGTTAAGTAAACATAGCTCAAATATAACAATCCTGCAAAAGCCATGCTATTTGTATCAACTTTGTACAGATGGACAGACACGTGTGCCCAGAACTTTTGTCCCTCTTTTGGC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021561946.2 False 4157 mRNA 0.45 7 38964554 38973957
TU161302 False 868 lncRNA 0.36 2 38861507 38973817
TU161301 True 2505 lncRNA 0.41 3 38971157 38973817

Neighbor

gene id symbol gene type direction distance location
LOC110489231 LOC106605109 coding upstream 12443 38942222 ~ 38952111 (+)
LOC110489198 mecr coding upstream 28411 38928238 ~ 38936143 (+)
LOC110489224 LOC106605111 coding upstream 48012 38899166 ~ 38916542 (+)
LOC118939688 NA coding upstream 106026 38857221 ~ 38858528 (+)
LOC110533769 LOC106583263 coding upstream 107328 38855182 ~ 38857226 (+)
LOC110489273 LOC106605104 coding downstream 13112 38987069 ~ 38990470 (+)
LOC110489280 LOC106605103 coding downstream 26764 39000721 ~ 39044657 (+)
atp1a3 atp1a3 coding downstream 196316 39170273 ~ 39195284 (+)
LOC118944148 NA coding downstream 260403 39234360 ~ 39234415 (+)
LOC110489329 LOC106605098 coding downstream 262570 39236527 ~ 39255790 (+)
G140363 LOC106605107 non-coding upstream 671 38952835 ~ 38963883 (+)
G140318 NA non-coding upstream 112492 38850907 ~ 38852062 (+)
LOC110489178 LOC106605114 non-coding upstream 116868 38823585 ~ 38847695 (+)
G140271 NA non-coding upstream 257246 38707079 ~ 38707308 (+)
G140264 NA non-coding upstream 264809 38699431 ~ 38699745 (+)
G140325 NA non-coding downstream 115 38974072 ~ 38974620 (+)
G140409 NA non-coding downstream 19046 38993003 ~ 38993230 (+)
G140595 NA non-coding downstream 32891 39006848 ~ 39007112 (+)
G140598 NA non-coding downstream 40916 39014873 ~ 39015078 (+)
G140601 NA non-coding downstream 44254 39018211 ~ 39018430 (+)
G139179 NA other upstream 912810 38051359 ~ 38051744 (+)
G139101 NA other upstream 1020542 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 1023840 37919735 ~ 37940714 (+)
G139004 NA other upstream 1140544 37777061 ~ 37824010 (+)
LOC110488849 LOC106605147 other upstream 2562583 36354883 ~ 36405310 (+)
LOC110489834 eny2 other downstream 2565338 41539240 ~ 41541654 (+)
G143938 LOC106605049 other downstream 2994417 41968374 ~ 41969317 (+)
G144661 NA other downstream 3536373 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 4756915 43730872 ~ 43731218 (+)
G146091 NA other downstream 4794750 43768707 ~ 43769162 (+)
LOC110489163 LOC106605115 coding upstream 38066 38789536 ~ 38823441 (+)
LOC110489149 LOC106605176 coding upstream 75060 38757233 ~ 38786447 (+)
G140214 NA non-coding upstream 201295 38659946 ~ 38660212 (+)

Expression


Co-expression Network