LOC110489493 (LOC100169854)


Basic Information

Item Value
gene id LOC110489493
gene name LOC100169854
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 39379592 ~ 39385031 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562186.2
TCAAATAAGGAGTTTGCAAAGGCGCATGCAGGTAGCATGCGGAAACCCACAATCTTTCCAAAGTGCAGAAGTTTTTTCTTCGATCTCATTCTGCTCTACTGTCACTATCCTCAACGCATACTCATTAGTGTATTGTCGCGTAAGGatttttttccccgatttttgtAACCTAAGACGTTTTGAGAATCCAGTTCAGATAAAATGTCCTATATGAAGACCTTGTCCTGGTTTGTGTTTGCCCTGTGTATTCTCCATGTGGTGGGTGAGGTGATCTACAAGAGAATTGGTCTGCCCGTCAATATTGATTGTGGAGTCAAGACCTCTAACAAGGATGTAGAGTGGAGACATAAAGCTGTGGGTGAAAGTGAATCTGTGTCGATCATGGGCATTAAAGGGAAGACTGGCAGCCAGCGGAAAGGAAATGCTCCCATGGTTGAAAGGGCGAAAATAAGAGGGGACAAGCTGGAAATCTCTGCTCTACAGGGTGGTGACGCCGGACTTTACATCTGTATGGTGGACGGGAAAAAGATGGATCACAGACTCGACATTGTCACAGTCAAGGTCCACCCCTCCAATGAACTCAACGAAGGCAACAATGCTATCCTCGAGTGCCAGGTGACAGGAGTGGATCCCTTGCCCAGTGTGGAGTGGCTTAGTCCAGGTGGAATGGCGGCAGGGGCCCCTGTACGACCTGGCTTTGGGAATGTCTCTTTCAGCTCTGTGGCCCTGTCAGACACAGGAGAATGGACATGTCAGATTACTCAGAATGAGAAGATACACAAAGAGACTCAGACCATCAATGTGAAAAGTTTGTTGACTGCTAAGCCCCTCTTGCCGAGGAAGGGCCCAGTTGATGAGCAGGGGCACAGTGGACCTAACTCTGATGTAAAAACTGTGACAGCTTGCGATCACTGTACCAAAGGCGTTGAGCAGTCCGTTGAGGGGGTGTCCATGCTGGGCTTAAGCCTGTGGGTGTGGGTGGCAGTGGGAGCAGGATGCTTGGTCGTGGTCTTACTCCTGGTGACCATTGTTCTCCTGTACCACAGGAACAAAAGAATTAAGAGAAGAGCCCGGAAGGTGAAGAACAACAGAGAGCCCTTGAAGTCCGACTACTGCCAGTGTAACCGCACACTAGTGGGTCCACCtcggaggacacagagagagaagcctTTGGCTGTACCACTGAAACAGCGCTGATGGAGCGGAGCATTATGGGCTGGAACAGGCTTGATCGACGACACAGGGTGGatggaaagatgagagagagagaaaagtagtCTTATACAGCTAGAGTGAcccaagggagagagagagggggggggggggggtgagataaTGTAAATGGGCTTATGTCTGTTTCAAAAATATGAATGATGAAATGATATAAACTGAAAATCACGTGTTGAAGAAAGAAACAAGCAATGTTATTCTTACCTATGTTATTGAATGTCATCAGACGTCTTTCCTGGCATTGTACGGCCATCCTCTAATGCATTGCATCTTTGTACTTAGATAATACTCAATGATTATTCATTTTCACACAAAGCCGCTGATGTATACCGTACGGTTTTCGAAGGCTTTTGCAATGATTCTTGCTGTTATATTGTTCAGCGTGGCCTATTTACAGACGTTACAATTTTGTCAACTTTATGgccacttttaaaaaaaaatacctgCTTGTTAAGTTATGAATTGATATGCCTGTTCAGTTCATGTGTTTTCTTGTTGAAGGGAATGAAGATCATAGTAACCAATAAAGCATATTTTTTGGA
>XM_021562191.2
AAATAAGGAGTTTGCAAAGGCGCATGCAGGTAGCATGCGGAAACCCACAATCTTTCCAAAGTGCAGAAGTTTTTTCTTCGATCTCATTCTGCTCTACTGTCACTATCCTCAACGCATACTCATTAGTGTATTGTCGCGTAAGGatttttttccccgatttttgtAACCTAAGACGTTTTGAGAATCCAGTTCAGGTAAATTACAAATCAGATCAGATAAAATGTCCTATATGAAGACCTTGTCCTGGTTTGTGTTTGCCCTGTGTATTCTCCATGTGGTGGGTGAGGTGATCTACAAGAGAATTGGTCTGCCCGTCAATATTGATTGTGGAGTCAAGACCTCTAACAAGGATGTAGAGTGGAGACATAAAGCTGTGGGTGAAAGTGAATCTGTGTCGATCATGGGCATTAAAGGGAAGACTGGCAGCCAGCGGAAAGGAAATGCTCCCATGGTTGAAAGGGCGAAAATAAGAGGGGACAAGCTGGAAATCTCTGCTCTACAGGGTGGTGACGCCGGACTTTACATCTGTATGGTGGACGGGAAAAAGATGGATCACAGACTCGACATTGTCACAGTCAAGGTCCACCCCTCCAATGAACTCAACGAAGGCAACAATGCTATCCTCGAGTGCCAGGTGACAGGAGTGGATCCCTTGCCCAGTGTGGAGTGGCTTAGTCCAGGTGGAATGGCGGCAGGGGCCCCTGTACGACCTGGCTTTGGGAATGTCTCTTTCAGCTCTGTGGCCCTGTCAGACACAGGAGAATGGACATGTCAGATTACTCAGAATGAGAAGATACACAAAGAGACTCAGACCATCAATGTGAAAAGTTTGTTGACTGCTAAGCCCCTCTTGCCGAGGAAGGGCCCAGTTGATGAGCAGGGGCACAGTGGACCTAACTCTGATGTAAAAACTGTGACAGCTTGCGATCACTGTACCAAAGGCGTTGAGCAGTCCGTTGAGGGGGTGTCCATGCTGGGCTTAAGCCTGTGGGTGTGGGTGGCAGTGGGAGCAGGATGCTTGGTCGTGGTCTTACTCCTGGTGACCATTGTTCTCCTGTACCACAGGAACAAAAGAATTAAGAGAAGAGCCCGGAAGGTGAAGAACAACAGAGAGCCCTTGAAGTCCGACTACTGCCAGTGTAACCGCACACTAGTGGGTCCACCtcggaggacacagagagagaagcctTTGGCTGTACCACTGAAACAGCGCTGATGGAGCGGAGCATTATGGGCTGGAACAGGCTTGATCGACGACACAGGGTGGatggaaagatgagagagagagaaaagtagtCTTATACAGCTAGAGTGAcccaagggagagagagagggggggggggggggtgagataaTGTAAATGGGCTTATGTCTGTTTCAAAAATATGAATGATGAAATGATATAAACTGAAAATCACGTGTTGAAGAAAGAAACAAGCAATGTTATTCTTACCTATGTTATTGAATGTCATCAGACGTCTTTCCTGGCATTGTACGGCCATCCTCTAATGCATTGCATCTTTGTACTTAGATAATACTCAATGATTATTCATTTTCACACAAAGCCGCTGATGTATACCGTACGGTTTTCGAAGGCTTTTGCAATGATTCTTGCTGTTATATTGTTCAGCGTGGCCTATTTACAGACGTTACAATTTTGTCAACTTTATGgccacttttaaaaaaaaatacctgCTTGTTAAGTTATGAATTGATATGCCTGTTCAGTTCATGTGTTTTCTTGTTGAAGGGAATGAAGATCATAGTAACCAATAAAGCATATTTTTTGGA
>XM_021562187.2
ATGTTTTGTCGGAGCTAGTTCAGTTACATGggctatatgtttttttttttacccggagaggagaggagttttatttgtattttttaacgTGGGAAATGCTGAAGGCAAGAGGGGACGGATAATCAACCTTTAACAGTTGAATTTAGACACAACTATATTGCACAAATCCATTTTTCTGGACGAAGCCAGCCtaaatattttggtttcattttgTTAAAACACTCCCGGACCGGACTAAAATTTGATTAACGCAGATGCTTCTTAGTTGGGGTGTGGGAAGAGTCTGACTTCAGGGAAatggcagttaacacactgaatTTAGACTACCAAACGCCTATTTAGACCGAATCACCATCTCTTCAAAATAAAATGTCCTATATGAAGACCTTGTCCTGGTTTGTGTTTGCCCTGTGTATTCTCCATGTGGTGGGTGAGGTGATCTACAAGAGAATTGGTCTGCCCGTCAATATTGATTGTGGAGTCAAGACCTCTAACAAGGATGTAGAGTGGAGACATAAAGCTGTGGGTGAAAGTGAATCTGTGTCGATCATGGGCATTAAAGGGAAGACTGGCAGCCAGCGGAAAGGAAATGCTCCCATGGTTGAAAGGGCGAAAATAAGAGGGGACAAGCTGGAAATCTCTGCTCTACAGGGTGGTGACGCCGGACTTTACATCTGTATGGTGGACGGGAAAAAGATGGATCACAGACTCGACATTGTCACAGTCAAGGTCCACCCCTCCAATGAACTCAACGAAGGCAACAATGCTATCCTCGAGTGCCAGGTGACAGGAGTGGATCCCTTGCCCAGTGTGGAGTGGCTTAGTCCAGGTGGAATGGCGGCAGGGGCCCCTGTACGACCTGGCTTTGGGAATGTCTCTTTCAGCTCTGTGGCCCTGTCAGACACAGGAGAATGGACATGTCAGATTACTCAGAATGAGAAGATACACAAAGAGACTCAGACCATCAATGTGAAAAGTTTGTTGACTGCTAAGCCCCTCTTGCCGAGGAAGGGCCCAGTTGATGAGCAGGGGCACAGTGGACCTAACTCTGATGTAAAAACTGTGACAGCTTGCGATCACTGTACCAAAGGCGTTGAGCAGTCCGTTGAGGGGGTGTCCATGCTGGGCTTAAGCCTGTGGGTGTGGGTGGCAGTGGGAGCAGGATGCTTGGTCGTGGTCTTACTCCTGGTGACCATTGTTCTCCTGTACCACAGGAACAAAAGAATTAAGAGAAGAGCCCGGAAGGTGAAGAACAACAGAGAGCCCTTGAAGTCCGACTACTGCCAGTGTAACCGCACACTAGTGGGTCCACCtcggaggacacagagagagaagcctTTGGCTGTACCACTGAAACAGCGCTGATGGAGCGGAGCATTATGGGCTGGAACAGGCTTGATCGACGACACAGGGTGGatggaaagatgagagagagagaaaagtagtCTTATACAGCTAGAGTGAcccaagggagagagagagggggggggggggggtgagataaTGTAAATGGGCTTATGTCTGTTTCAAAAATATGAATGATGAAATGATATAAACTGAAAATCACGTGTTGAAGAAAGAAACAAGCAATGTTATTCTTACCTATGTTATTGAATGTCATCAGACGTCTTTCCTGGCATTGTACGGCCATCCTCTAATGCATTGCATCTTTGTACTTAGATAATACTCAATGATTATTCATTTTCACACAAAGCCGCTGATGTATACCGTACGGTTTTCGAAGGCTTTTGCAATGATTCTTGCTGTTATATTGTTCAGCGTGGCCTATTTACAGACGTTACAATTTTGTCAACTTTATGgccacttttaaaaaaaaatacctgCTTGTTAAGTTATGAATTGATATGCCTGTTCAGTTCATGTGTTTTCTTGTTGAAGGGAATGAAGATCATAGTAACCAATAAAGCATATTTTTTGGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562186.2 False 1772 mRNA 0.46 9 39379592 39385031
XM_021562191.2 False 1791 mRNA 0.46 9 39379594 39385031
XM_021562187.2 True 1940 mRNA 0.45 9 39379822 39385031

Neighbor

gene id symbol gene type direction distance location
LOC110489446 ubp5 coding upstream 1304 39366408 ~ 39378288 (+)
LOC110489418 LOC106605090 coding upstream 42013 39328460 ~ 39337579 (+)
LOC110489375 LOC106605093 coding upstream 59710 39298409 ~ 39319882 (+)
LOC110489358 LOC106605095 coding upstream 81528 39256426 ~ 39298064 (+)
LOC110489329 LOC106605098 coding upstream 123802 39236527 ~ 39255790 (+)
LOC110501538 LOC100301666 coding downstream 18790 39403821 ~ 39412741 (+)
LOC110489499 LOC106605088 coding downstream 28425 39413456 ~ 39420001 (+)
LOC110489505 csn7a coding downstream 45575 39430606 ~ 39440426 (+)
ubxn11 ubxn11 coding downstream 84623 39469654 ~ 39485394 (+)
LOC110489537 LOC106605082 coding downstream 115114 39500145 ~ 39520622 (+)
G140772 NA non-coding upstream 29233 39350136 ~ 39350359 (+)
G140771 NA non-coding upstream 29807 39349525 ~ 39349785 (+)
G140766 NA non-coding upstream 32135 39341782 ~ 39347457 (+)
G140758 NA non-coding upstream 50015 39329325 ~ 39329577 (+)
G140757 NA non-coding upstream 53166 39326208 ~ 39326426 (+)
G140792 NA non-coding downstream 18303 39403334 ~ 39403625 (+)
G140793 NA non-coding downstream 37327 39422358 ~ 39422680 (+)
G140794 NA non-coding downstream 45068 39430099 ~ 39430309 (+)
G140809 NA non-coding downstream 52924 39437955 ~ 39438584 (+)
G139179 NA other upstream 1327848 38051359 ~ 38051744 (+)
G139101 NA other upstream 1435580 37943742 ~ 37944012 (+)
G139089 LOC106605123 other upstream 1438878 37919735 ~ 37940714 (+)
G139004 NA other upstream 1555582 37777061 ~ 37824010 (+)
LOC110488849 LOC106605147 other upstream 2977621 36354883 ~ 36405310 (+)
LOC110489834 eny2 other downstream 2154264 41539240 ~ 41541654 (+)
G143938 LOC106605049 other downstream 2583343 41968374 ~ 41969317 (+)
G144661 NA other downstream 3125299 42510330 ~ 42566030 (+)
G146054 LOC100136012 other downstream 4345841 43730872 ~ 43731218 (+)
G146091 NA other downstream 4383676 43768707 ~ 43769162 (+)

Expression


Co-expression Network