Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110491108 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 50678814 ~ 50689147 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: transposon Tf2-1 polyprotein |
| id | name | namespace |
|---|---|---|
| GO:0006412 | translation | biological_process |
| GO:0015074 | DNA integration | biological_process |
| GO:0005840 | ribosome | cellular_component |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_002468779.2 | True | 1324 | mRNA | 0.52 | 5 | 50678814 | 50689147 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| zgc:56585 | pgdh | coding | upstream | 98598 | 50575416 ~ 50580216 (+) |
| LOC110515922 | faxdc2 | coding | upstream | 208689 | 50460347 ~ 50470125 (+) |
| LOC110510939 | faxdc2 | coding | upstream | 245258 | 50424133 ~ 50433556 (+) |
| LOC110491046 | LOC106560687 | coding | upstream | 442588 | 50223738 ~ 50236226 (+) |
| LOC110491040 | LOC106560688 | coding | upstream | 480129 | 50181300 ~ 50198685 (+) |
| LOC110491126 | LOC106602822 | coding | downstream | 28433 | 50717580 ~ 50884089 (+) |
| LOC110491193 | LOC106560681 | coding | downstream | 270984 | 50960131 ~ 50972173 (+) |
| sat2b | sat2 | coding | downstream | 293811 | 50982958 ~ 51008552 (+) |
| LOC110491259 | LOC106560678 | coding | downstream | 378344 | 51067491 ~ 51087131 (+) |
| LOC118944166 | NA | coding | downstream | 405576 | 51094723 ~ 51094847 (+) |
| G154591 | NA | non-coding | upstream | 78663 | 50599718 ~ 50600151 (+) |
| G154592 | NA | non-coding | upstream | 90091 | 50588429 ~ 50588723 (+) |
| G154594 | NA | non-coding | upstream | 91225 | 50587274 ~ 50587589 (+) |
| G154593 | NA | non-coding | upstream | 92625 | 50585533 ~ 50586189 (+) |
| G154584 | NA | non-coding | upstream | 110059 | 50568324 ~ 50568755 (+) |
| G154662 | NA | non-coding | downstream | 43758 | 50732905 ~ 50733216 (+) |
| G154663 | NA | non-coding | downstream | 44342 | 50733489 ~ 50783570 (+) |
| G154664 | NA | non-coding | downstream | 44476 | 50733623 ~ 50735681 (+) |
| G154669 | NA | non-coding | downstream | 67824 | 50756971 ~ 50778278 (+) |
| G154679 | NA | non-coding | downstream | 97210 | 50786357 ~ 50786953 (+) |
| LOC110491026 | LOC106560691 | other | upstream | 578340 | 50098387 ~ 50100624 (+) |
| G152167 | NA | other | upstream | 2121128 | 48556782 ~ 48557686 (+) |
| G150997 | NA | other | upstream | 3131235 | 47497948 ~ 47547579 (+) |
| uevld | uevld | other | upstream | 3693588 | 46981686 ~ 47007672 (+) |
| G148191 | NA | other | upstream | 5186435 | 45472082 ~ 45492379 (+) |
| G154859 | NA | other | downstream | 476268 | 51165415 ~ 51167174 (+) |
| LOC110501653 | LOC106560673 | other | downstream | 632649 | 51317121 ~ 51339537 (+) |
| rl28 | rl28 | other | downstream | 723119 | 51412121 ~ 51417154 (+) |
| G155541 | NA | other | downstream | 731700 | 51420847 ~ 51421122 (+) |
| G156000 | LOC106560791 | other | downstream | 1127363 | 51816510 ~ 51824182 (+) |
