LOC110492043 (catsper2)


Basic Information

Item Value
gene id LOC110492043
gene name catsper2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56207828 ~ 56229077 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951018.1
GGAAAAATATAAATCACAGATATTAAAATAGTATGCATTATAATGTTCATTGCTTATTCATTACTATTGATACATTGTGTCTTTCTTTCCAAACAAAAATGTTCTGTGTCAGATGATACAATACTTTTTACATGTATTAATCACTACAGTATTTTGAACTAAGAGCCTGAcagagttgattgatttatggaGTTACAGACAACGTAATAACAGCTGAACGATATTCATATAGACAAATGGGGACACAGGAGCCCCCCTCCATGGATCTTCCCTCCTACAACAGCCACAATGAGATGGGCAAGTCAACCAATGAGAAGTTCCTTCCCAGAGCAGAGGTGGTCAGGTCCAAACTCATCCAGAGCTTCTACCTGCTGGACCAGTtacaggaggagcagagaggaagccCCAAATACTGCACCAATGATGTTTTAGaagAGGAGAACTACACCAGTCTGATGGGGAAGGACACACACCAGCTGGTGCGTTTCGAGATCTCCCCCCAGAGGGGCAGCACCATCACCATGGACCTCCGTCGCCAGGGACGACTGGAGAACCTCCATGCCAACTATCCGCCCTTGAACATGTTTGCCCACTGGATTCTAGAGAGTAAAATATTTATGAATATCATTGTCATCCTCATCATTCTGAACACCATTGTCTTGGAGATACAAGCAGAGGTGTTTGACAACATGGACCCCAAGCTGGAGATTGTGAAACTGGTTCTGGAAATGTTGGACTGGAGCATCCTGGCCATCTTCTTCCTGGAGATCTTATTGAAGTGGTTGGACAACTTCTGGAATTTCTGGAAAAGCACCTGGAACATCTTTGATTTTGCTGTCACCATGCTGtctGTTATACCAGAGATCGTGAAGGTCTTCAAAGGGGTGGACACTGACGACCTGGAGATTGTGGCACTCCTAAAGAAGTTCCGTATCCTCCGCTCCCTGAAAATTATCTCCAAATTCAGGCAGATCCGCCTTATCGTGTTGGCCATCTCCAAAGCGTTCAAGgctaTGACCTTCATATTCTTACTGCTGCTGGTGTTTGCTTATATCTTCGCTGTGGTTGGAGTCATCCTGTTCGAGAGTTACACTCGCTCCAACATCGAGGGCCTGGTCTACAATATGAACTTTAAAGATATCTACAACTCCTTCATCACCCTCTTCATCCTCTTCACCATGGATCACTGGTACGCTCTGCTCGCCGACACCCGCAAAGTTCCAGAACTGGACAAAGCCATATGTGGCCTATACATCATCCTCTGGCTCCTCATAGGCTCCTTCGTATTCCGCAATATCTTTGTGGGTATTATGGTGAATAACTTCCAGGCCATCCGGAGTGACCTCTCTAAAGAGGTACAGCAGATTGAGATCCAGGCCAAAGCTGATCTCTTTAAAGCTGAGATCATAAACAGGAGGATAAGTCATTCGAAATTTGCCGGGCTGAGCAAAGTGGCAGAGGATGGTGAAGAGTCATTTTCCACTGAGGATCTACTACAGTTTACAAGATCTAATATTCCAGAAAAAGACTGGGAGTCGTACGTGGAGGAGAATATGAAGGTGATGCAGGAGCAAGAGGAGGACGAGAAGGTCACCTGGCCCCGGGATTCCCTTTTCAGGTACTTTGAGCTGCTGGAGGTTCTCCAGCACAACCTGGACGAGAGGAAGAGGCTGCAGAACTTAGCAGTTCAGGCATTGCTAAACCTGCACGACTCATAGGACCCCACATCGACATCTATTCAGAAGAGCCACCAtattttgaagaaaataaaacatgttttttttcttcccagtATTGTCAGTGTCCATGTTCAATTAGTCATCTAGTTCACCCTTGAGAACTAAAGCTGATGTGGAAGGCAGAGAGAGCCAAcgatagcctggttaaaccataCTGAATGCTGCGCACACCGCTGTTTTACTTCACCTCAGTTTGGATGCCAGGCTAAGGCAATGAGGTCAAATATATTTATTCCTAGTAGTAGTCAACTTGAATGGTCTCACAGTTCCACCCAATATGTAATAGGGGGCACTCTTACACAGTGTCACTGAGCCCCCTGGGAGGTCATGGACCGTGTCCACCACAGTTCTCCTTAAGATTATTCCCTGCCATCTTAGATTGACATGTGACATCCTAGACAGATCAAGGTTACATTGGTACTGTCCTATGCAATAGCTGGTGGACAATAACAATGGGGTTTTATTTAAATAAAAGAAGGCTACATTAAGTCCTCAGCGCAGAGGCTACTCTCAAAGTAGTCAAGAAATGGCTGCCAGACCTTAGAAAACTTTTGAGAGGAGCCACGGGTGGAATATTTTACCTTCTCAAGTTTGAGATGGGCCATAACATCACTAACCCAGTTTAAGATGGGCCATAACGTCCCTAACTCAGTGAGCATGCGATGGCGGGGTATCGGGTTTCCACTTAAAAAGGAATAAGTGGGCGGGCCAGACGGGACGAAAAGGCTATGGCCTCTGCTTGGGTAATGCAGAAAGTAATCCCTTCGTGAGCGCCTCAATAATAGGGACAAAAGGGAGTTGGGGCAATTTTCTTATTGCATATATTTGAGAAAGTCTCAAAGATAGAGGACCAGAATGGACCTGGTGTCAGGCATGACCAGTACGTGTGATACAGAGTGGCGGTTGGCTGATGGCATCTAGAGTAGGTTGGGTCTATTTCTGTTTACAATACGGAAGGTCTACTCCTGCAAAAGTGTAGGCAATGAAATACTTGAAAACTTTAGTAAATCATGTCTAATGCAGATAGAGGATATGTGTATCCTGTCAATTGCAGAATGCCAGGTGATATCGGAGATCTCGATTCCAAACGCTTCCTCCCATGAACGATTTACGTGGTCTGGCAGCCATTTCTCGACTACATTGAGAGTAACCTCTGCTCTGAGAACTTAATGTAGCCTTGTTTTATAAAAACGTTCTATTGTCCACCAGCTATTGCATAGGATAGTACCAATGGAACCTTGATTGATGCACATGTCTATCTAAGATTGGGGCACGCAATATTCTGAATAATGTCATGCAGCATAGAAATGTGTCCCTTTTTTTTTAGGGATCCAGGTTCAAACCAGCTGGTGggtgggagagatggggggggggggatcagactAAAGAGGTTGGGATGATGTTTGACATGAGTGCTATTCCATAAGTGGCCACACCAGTTGGTCCTTCCCCCTCTAAGAACGTAGAGACCCAAATGTTTATATTGTGAATATTGACAGTTCGGTAGTAATGGAGGAAACTGGGTAGAGCAAGACCCCCCTCTCCTTTATATCTTTCCAAAAAAACACTTTACGCAACCATGGGATCGTTTATATTCCAAATGAAagtacatatacactgagtgttcaaaacgtcaaggacacctgctctttccatgacatcgactgaccaggtgaatccaggtgaaagc
>XM_036951017.1
gatgatttgtgtgagattgagggcatctagcttagattgtaggactgccggggtgtgaAGCATATCTGTTTCATGTTGTAAATTTATGGCTATTCAAATTGTCATATGAATGGCATTCTTTAAAAACTTTAGTGTAAATTCAGGGTCTAATCACTGACAACAATTGCCGTAATTTGCATGGTCATTTTCCAGGAGCCCCCCTCCATGGATCTTCCCTCCTACAACAGCCACAATGAGATGGGCAAGTCAACCAATGAGAAGTTCCTTCCCAGAGCAGAGGTGGTCAGGTCCAAACTCATCCAGAGCTTCTACCTGCTGGACCAGTtacaggaggagcagagaggaagccCCAAATACTGCACCAATGATGTTTTAGaagAGGAGAACTACACCAGTCTGATGGGGAAGGACACACACCAGCTGGTGCGTTTCGAGATCTCCCCCCAGAGGGGCAGCACCATCACCATGGACCTCCGTCGCCAGGGACGACTGGAGAACCTCCATGCCAACTATCCGCCCTTGAACATGTTTGCCCACTGGATTCTAGAGAGTAAAATATTTATGAATATCATTGTCATCCTCATCATTCTGAACACCATTGTCTTGGAGATACAAGCAGAGGTGTTTGACAACATGGACCCCAAGCTGGAGATTGTGAAACTGGTTCTGGAAATGTTGGACTGGAGCATCCTGGCCATCTTCTTCCTGGAGATCTTATTGAAGTGGTTGGACAACTTCTGGAATTTCTGGAAAAGCACCTGGAACATCTTTGATTTTGCTGTCACCATGCTGtctGTTATACCAGAGATCGTGAAGGTCTTCAAAGGGGTGGACACTGACGACCTGGAGATTGTGGCACTCCTAAAGAAGTTCCGTATCCTCCGCTCCCTGAAAATTATCTCCAAATTCAGGCAGATCCGCCTTATCGTGTTGGCCATCTCCAAAGCGTTCAAGgctaTGACCTTCATATTCTTACTGCTGCTGGTGTTTGCTTATATCTTCGCTGTGGTTGGAGTCATCCTGTTCGAGAGTTACACTCGCTCCAACATCGAGGGCCTGGTCTACAATATGAACTTTAAAGATATCTACAACTCCTTCATCACCCTCTTCATCCTCTTCACCATGGATCACTGGTACGCTCTGCTCGCCGACACCCGCAAAGTTCCAGAACTGGACAAAGCCATATGTGGCCTATACATCATCCTCTGGCTCCTCATAGGCTCCTTCGTATTCCGCAATATCTTTGTGGGTATTATGGTGAATAACTTCCAGGCCATCCGGAGTGACCTCTCTAAAGAGGTACAGCAGATTGAGATCCAGGCCAAAGCTGATCTCTTTAAAGCTGAGATCATAAACAGGAGGATAAGTCATTCGAAATTTGCCGGGCTGAGCAAAGTGGCAGAGGATGGTGAAGAGTCATTTTCCACTGAGGATCTACTACAGTTTACAAGATCTAATATTCCAGAAAAAGACTGGGAGTCGTACGTGGAGGAGAATATGAAGGTGATGCAGGAGCAAGAGGAGGACGAGAAGGTCACCTGGCCCCGGGATTCCCTTTTCAGGTACTTTGAGCTGCTGGAGGTTCTCCAGCACAACCTGGACGAGAGGAAGAGGCTGCAGAACTTAGCAGTTCAGGCATTGCTAAACCTGCACGACTCATAGGACCCCACATCGACATCTATTCAGAAGAGCCACCAtattttgaagaaaataaaacatgttttttttcttcccagtATTGTCAGTGTCCATGTTCAATTAGTCATCTAGTTCACCCTTGAGAACTAAAGCTGATGTGGAAGGCAGAGAGAGCCAAcgatagcctggttaaaccataCTGAATGCTGCGCACACCGCTGTTTTACTTCACCTCAGTTTGGATGCCAGGCTAAGGCAATGAGGTCAAATATATTTATTCCTAGTAGTAGTCAACTTGAATGGTCTCACAGTTCCACCCAATATGTAATAGGGGGCACTCTTACACAGTGTCACTGAGCCCCCTGGGAGGTCATGGACCGTGTCCACCACAGTTCTCCTTAAGATTATTCCCTGCCATCTTAGATTGACATGTGACATCCTAGACAGATCAAGGTTACATTGGTACTGTCCTATGCAATAGCTGGTGGACAATAACAATGGGGTTTTATTTAAATAAAAGAAGGCTACATTAAGTCCTCAGCGCAGAGGCTACTCTCAAAGTAGTCAAGAAATGGCTGCCAGACCTTAGAAAACTTTTGAGAGGAGCCACGGGTGGAATATTTTACCTTCTCAAGTTTGAGATGGGCCATAACATCACTAACCCAGTTTAAGATGGGCCATAACGTCCCTAACTCAGTGAGCATGCGATGGCGGGGTATCGGGTTTCCACTTAAAAAGGAATAAGTGGGCGGGCCAGACGGGACGAAAAGGCTATGGCCTCTGCTTGGGTAATGCAGAAAGTAATCCCTTCGTGAGCGCCTCAATAATAGGGACAAAAGGGAGTTGGGGCAATTTTCTTATTGCATATATTTGAGAAAGTCTCAAAGATAGAGGACCAGAATGGACCTGGTGTCAGGCATGACCAGTACGTGTGATACAGAGTGGCGGTTGGCTGATGGCATCTAGAGTAGGTTGGGTCTATTTCTGTTTACAATACGGAAGGTCTACTCCTGCAAAAGTGTAGGCAATGAAATACTTGAAAACTTTAGTAAATCATGTCTAATGCAGATAGAGGATATGTGTATCCTGTCAATTGCAGAATGCCAGGTGATATCGGAGATCTCGATTCCAAACGCTTCCTCCCATGAACGATTTACGTGGTCTGGCAGCCATTTCTCGACTACATTGAGAGTAACCTCTGCTCTGAGAACTTAATGTAGCCTTGTTTTATAAAAACGTTCTATTGTCCACCAGCTATTGCATAGGATAGTACCAATGGAACCTTGATTGATGCACATGTCTATCTAAGATTGGGGCACGCAATATTCTGAATAATGTCATGCAGCATAGAAATGTGTCCCTTTTTTTTTAGGGATCCAGGTTCAAACCAGCTGGTGggtgggagagatggggggggggggatcagactAAAGAGGTTGGGATGATGTTTGACATGAGTGCTATTCCATAAGTGGCCACACCAGTTGGTCCTTCCCCCTCTAAGAACGTAGAGACCCAAATGTTTATATTGTGAATATTGACAGTTCGGTAGTAATGGAGGAAACTGGGTAGAGCAAGACCCCCCTCTCCTTTATATCTTTCCAAAAAAACACTTTACGCAACCATGGGATCGTTTATATTCCAAATGAAagtacatatacactgagtgttcaaaacgtcaaggacacctgctctttccatgacatcgactgaccaggtgaatccaggtgaaagc

Function

symbol description
catsper2 Predicted to enable calcium activated cation channel activity; calcium channel activity; and voltage-gated ion channel activity. Predicted to be involved in fertilization; flagellated sperm motility; and sperm capacitation. Predicted to be located in sperm flagellum. Predicted to be part of CatSper complex.

NR:

description
cation channel sperm-associated protein 2

GO: NA

KEGG:

id description
K16890 CATSPER2; cation channel sperm-associated protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951018.1 False 3429 mRNA 0.45 14 56207828 56229077
XM_036951017.1 True 3373 mRNA 0.46 12 56210763 56229077

Neighbor

gene id symbol gene type direction distance location
LOC110491996 LOC106561096 coding upstream 36864 56146461 ~ 56170964 (+)
acanb LOC106561101 coding upstream 151448 56032490 ~ 56056380 (+)
LOC110491898 map1a coding upstream 276244 55861422 ~ 55931584 (+)
scamp2 scamp2 coding upstream 350528 55841445 ~ 55857300 (+)
myo9ab LOC106560748 coding upstream 388310 55592661 ~ 55819518 (+)
LOC110492132 LOC106561087 coding downstream 257620 56486697 ~ 56497109 (+)
LOC110492152 LOC106584663 coding downstream 278559 56507636 ~ 56518535 (+)
LOC110492171 LOC106561080 coding downstream 339497 56568574 ~ 56620288 (+)
LOC110492185 LOC106561079 coding downstream 392362 56621439 ~ 56633187 (+)
LOC118944174 NA coding downstream 403649 56632726 ~ 56632853 (+)
G161668 NA non-coding upstream 6208 56200522 ~ 56201620 (+)
G161667 pdia3 non-coding upstream 7318 56200106 ~ 56200510 (+)
G161663 i20l1 non-coding upstream 10392 56196310 ~ 56197436 (+)
G161662 NA non-coding upstream 13154 56193694 ~ 56194674 (+)
G161594 NA non-coding upstream 76164 56130983 ~ 56131664 (+)
G161715 NA non-coding downstream 58738 56287815 ~ 56288182 (+)
G161716 NA non-coding downstream 59875 56288952 ~ 56289283 (+)
G161722 NA non-coding downstream 67774 56296851 ~ 56297082 (+)
G161724 NA non-coding downstream 70007 56299084 ~ 56299404 (+)
G161821 NA non-coding downstream 71794 56300871 ~ 56301339 (+)
G160569 NA other upstream 260583 55946143 ~ 55947245 (+)
G159889 LOC106562215 other upstream 1478968 54728296 ~ 54728860 (+)
G159415 NA other upstream 1854440 54352983 ~ 54353388 (+)
G158778 LOC106560766 other upstream 2185924 54021608 ~ 54021904 (+)
G156000 LOC106560791 other upstream 4383646 51816510 ~ 51824182 (+)
G161687 NA other downstream 15967 56245044 ~ 56252598 (+)
G162130 NA other downstream 819237 57048314 ~ 57053642 (+)
G163513 LOC106561046 other downstream 1699073 57928150 ~ 57931991 (+)
G163660 LOC106561040 other downstream 1986600 58215677 ~ 58216383 (+)
G166131 lmod2 other downstream 3716631 59945708 ~ 59953165 (+)

Expression


Co-expression Network