LOC110492531 (LOC106561047)


Basic Information

Item Value
gene id LOC110492531
gene name LOC106561047
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 57795263 ~ 57797634 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021566934.2
TAGTACGAGCAAACCTGCCTGCCTCCTCCAAACGATGGACCGGGGGTAGTTTTATCACCACTGCTGTTGCGGGTTATCTACCATTTTATCCGTAGGAATGAACATTAATCGCGGACAAGCGCGCCAGACCAGTGCGTCAATTGCGACGGTTGGCTACTATCGAGTTGCTGTTGCGTGACTGACAGCGGCAGCTGAATGCAGAATCTTCTCATGGGACCTGGGCGGCTATGGTGGTGCGCCTGCCTGATCTGGAACGGGGCAATGTGAAGAGCTCACATACTTTTAGAAACTAGATGACAGAGCAACACTCTTCCTCTGGCAGCTGCGGTCATTCGGGATGAGAACTGTCACGAGCGGTCGCCTTCTGTTAGGGGACGCACATGAGAAGAGGAAATTAGCCTATAGATTTTAATCAAGAGGAGGTAGCTAATCTGCTTAATCATTGGTCCCGCGGTGAATAGTAGGCTATGGGATCACTATGTTGTCCCGAAAAGGACTGGTCCCTGACGACTACTTGCTGACCCGCTTGGCTGAGGATGTCCAGCAGCCTAAATTCAAGGGGAAAGCGCGGAAGGCTCGGTTCGTTGCCAAAAATGGAACTTGTAATGTGGCCCACACGAACATTCGCGAACAAGGACGGTTCCTACAGGATGTTTTCACCACTTTAGTGGATCTAAAATGGCTTCACACACTTATAATTTTCACCATGTCGTTTCTATGCAGCTGGCTGCTGTTTGCGATGGCGTGGTGGCTCATTGCCTTTGCACACGGCGACCTGGATCAAAAAGGTGACGACTTTGTCCCTTGCGTAACGGACATCCACTCCTTCTCCTCCGCTTTCCTTTTCTCCATAGAGGTGCAGGTGACCATCGGGTTCGGTGGACGCATGGTCACAGAGGAATGTTTGTCCGCCATAGTGGTCCTCATCATTCAGAACATCGTGGGCTTGCTGATTAACGCCATCATgctggggtgtatatttatgaAGACGGCCCAGGCGAACCGGCGCGCCGAGACGCTGATCTTCAGCAAGCACGCTGTCATTTCCATCCGAAATAACAGGCTCTGCTTTATGATCCGTTTAGGGGACCTGAGGAAGAGCATGATAATCAGCGCCACCGTGCGGATGCAGGTGGTAAGGCGTAGCACCACTCCGGAGGGCGAGGTGGTCCCCCTGGACCAGATAGACATTCACATGGACAACCCCGTGGGGACCAACGGTATTTTCCTGGTAGCCCCTCTTATCATATGTCACATTATCAACAAAGACAGCCCGCTCTATGAGCTGTCACCAGCGGACTTACAAAATAATGACATCGAGGTGATAGTGGTGCTGGAGGGGGTGGTGGAGACCACGGGGATAACCACCCAGGCCCGGACATCCTATCTGTCCGAGGAGATACTGTGGGGGCAGCGCTTTGTGCCCACTATAACCGAGGAAGAGGGCACGTACGCGGTAGACTACTCCAAATTCGGTAACGCGATTAGAGTACCGACACCCAGCTGCAGTGCCAAGAAACTGGATGAGGACGGAGGCATCGCCAGGTTTAAGCTGCACGAGCACTCCACCCCGCGGCCGTCGGTGAGAAGGCGGCAACTCTCACTGCGCATCAAGCGTCAAAGCACCATCAGCCCACTAGCCTAAATATACCACTTTAATAAAAGGAGTGGATAGTGCCAATGCATTTTGTATATGAAATTGAGATTTTTATTACCAATATCATTTTCATGGATATTTTTGTAATGTTACAGAAATGCTGTTTATGTCCAATGATGTTCTGATTCTGGGCACTGGGACCCACAAGGTGTGCATGCATGTTCTAGCCCAGCACACATCTTCAACCAAGGACTGACTGACTATATGTTTAAATGAATCCAGTGTTGGGCTAGAACAAAACTCTGCACACCCTGTGGGTATTAAGTCAGGACCAGGATTTAGTATGGTAGCCTAATAGCCATGTGCCCCTACATACTGCAATGTTAAATGTACTATATTACCTGAAAGCGTTAGGTGATTTTAGGGGCCTGAACATCCTGCCGTtctatcaatcccagaacatgcACGTATCAAATACCTTATACTCAGGGTGCTCAATGAAAACATATGAATGATGGAACGCAGTTGGATAGATGTGTAACATACAAAGCTATGCAATTATCCAGTTTGAAGGCACaggccagcgtgtgtgtgtgtagtagactGGTGCCCAACACTCCTCCCGGACAACTGGGCTCCTTGCAGGCTTTTCATCTGACCCTGCATGAAAACAATTGACCAGCGCTGATCTACATAATGATGCTCTTGTATGGTAAAAACATATTGTCTTATGCAAAGCTTGACATGGAAATAAAGGAATGCCTGTtgacatgta

Function

NR:

description
ATP-sensitive inward rectifier potassium channel 11-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005242 inward rectifier potassium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021566934.2 True 2372 mRNA 0.49 1 57795263 57797634

Neighbor

gene id symbol gene type direction distance location
LOC110492500 LOC106561050 coding upstream 5868 57667227 ~ 57789395 (+)
ush1c LOC106561052 coding upstream 139667 57606860 ~ 57655596 (+)
LOC110492461 LOC106561056 coding upstream 211739 57580154 ~ 57583524 (+)
LOC110492452 ccdc34 coding upstream 215433 57574248 ~ 57579830 (+)
LOC110492308 LOC106561065 coding upstream 234424 57556805 ~ 57560839 (+)
LOC110492579 LOC106561044 coding downstream 242704 58040338 ~ 58109443 (+)
LOC110492604 LOC106561042 coding downstream 312489 58110123 ~ 58111180 (+)
LOC110492647 LOC106561039 coding downstream 455970 58253604 ~ 58296746 (+)
LOC110492681 LOC106561133 coding downstream 518643 58316277 ~ 58322551 (+)
LOC110492721 LOC106561036 coding downstream 999749 58797383 ~ 59033367 (+)
G163438 NA non-coding upstream 401 57794549 ~ 57794862 (+)
G163362 NA non-coding upstream 2849 57789707 ~ 57792414 (+)
G163352 NA non-coding upstream 130822 57661952 ~ 57664441 (+)
LOC110492340 LOC106561069 non-coding upstream 258042 57536947 ~ 57546176 (+)
G163049 NA non-coding upstream 261020 57533948 ~ 57534243 (+)
G163464 NA non-coding downstream 47489 57845123 ~ 57845437 (+)
G163473 LOC106613263 non-coding downstream 57650 57855284 ~ 58335346 (+)
G163499 NA non-coding downstream 106203 57903837 ~ 57973779 (+)
G163544 NA non-coding downstream 197670 57995304 ~ 57999495 (+)
G163591 NA non-coding downstream 319159 58116793 ~ 58176299 (+)
G162130 NA other upstream 741621 57048314 ~ 57053642 (+)
G161687 NA other upstream 1542665 56245044 ~ 56252598 (+)
G160569 NA other upstream 1848018 55946143 ~ 55947245 (+)
G159889 LOC106562215 other upstream 3066403 54728296 ~ 54728860 (+)
G159415 NA other upstream 3441875 54352983 ~ 54353388 (+)
G163513 LOC106561046 other downstream 130516 57928150 ~ 57931991 (+)
G163660 LOC106561040 other downstream 418043 58215677 ~ 58216383 (+)
G166131 lmod2 other downstream 2148074 59945708 ~ 59953165 (+)
G166878 NA other downstream 2717998 60515632 ~ 60515880 (+)
LOC110493059 LOC100194658 other downstream 3053798 60851417 ~ 60866455 (+)

Expression


Co-expression Network