LOC110492752 (LOC106561032)


Basic Information

Item Value
gene id LOC110492752
gene name LOC106561032
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 59402177 ~ 59643249 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567226.2
CATGCCACCATGCACTCTTTGGGCTAGGCAAACACTCTGAGCATGAATTATATGAATTCGTCCTAAATAGTCCCTGCACACGTTTTCATGTGTGGTCATGGGTTATGGTGATTTGaaacagtcaattgaaataaactgCTCAGTATGTACAGCAACAACTAACAAACATCAGAGAAGCATTAGGTAGCACAGAGTTGGAAAACCAATCACCGTCGTGTGGGAGTACTGGGTGATTCCACGAGACAAGAAACGCGCTCGGGCTTCCTATGGTGTTTTTTCAGCACTATGAGCACAAGCTTGCGCCGCATTGGTGTGGCAGTGAGAGCGCGAAGGACCTGATCTGAGTAACCCGCAGGGTCTTTTGAGCATGTGATGCCAAGGATTGCAGAGAGATCAACACTGTCCAGCCAGTGTGAGAAACTcagcctctcttctctccagctcCCTTATATCACTCAAACTGCACCCCCTTCCCAGTGATGCCAGGAACATGCATCATCAGCTCTTTGAAACCAAGAGGTAAtcatccctaaccctaccctGATTTAGAGAGGGGCACCCATGGTACGCCCCACCCTGTGcacccaccaccacccaccagcTGCCTGCTGCTCCGATCTTCCAGTGCTACACCATCCCTCCCCTGACCCACTATCCCACTCACCCGCACTGCTACCACCATGGCCAGGGAGTccaaacacccctccctctcccgttATTGCTTCCTCTTCCTACTGACTACCAAATGCTACTGGCTGTTGGTCTCTGCCACTCAGAAGGTCTCGGACCCGCAGCTGCCTCTGCAGGAGTACGCCCATTCTATCCGGCTGGACGGTGACATCATGCTGGGTGGCCTATTCCCTGTGCACTCCCGTGGCGAGAGAGGAGTGCCCTGCGGGGAGCTGAAGAAAGAGAAGGGCATTCATAGGCTGGAGGCCATGCTGTTTGCCATTGACCTGATCAACAAGGACCCAGAGCTGCTACCGAACGTGACCCTGGGGGCGCGCATCCTGGACACGTGTTCCAGAGACACCTATGCCCTGGAGCAGTCACTGACCTTCGTTCAGGCACTCATCGAGAGGGATGGCTCAGACGTGCGCTGCGCCAACGGGGACGCACCCATCTTTGCCAAGCCGGATAAGGTGGTGGGGGTCATAGGGGCAGCGGCTAGCTCGGTGTCCATCATGGTGGCCAACATCCTGCGGCTCTTCAAGATCCCTCAGATCAGCTATGCATCCACAGCGCCCGAGCTGAGTGACAACACACGCTACGACTTCTTCTCCCGTGTGGTGCCACCAGACTCCTACCAAGCTCAGGCCATGCTGGACATCGTAACGGCGATGGGCTGGAACTATGTGTCGACCCTGGCCTCAGAGGGGAATTACGGTGAAAGTGGCGTGGAGGCTTTCGTCCAGATCTCCAGAGAGTCTGgtggTGTGTGCATTGCCCAGTCTCTGAAGATCCCCAGGGAGCCCAAGCCGGGGGAGTTTGACAAGCTTATTCTGCGATTGCTTGAGACCTCCAACGCCCGAGCCGTCATCATGTTTGCCAATGAGGACGACATTagGCGTATCCTGGACGCGGCCAAACGCAACAACGAGACTGGTCACTTCCTTTGGGTTGGTTCAGACAGCTGGGGGTCCAAGATCTCCCCTGTGGTCCAGCAGGAGAGAGTGGCAGAGGGGGCCATCACCATCCTCCCCAAGAGAGCCTCCGTGGACGCCTTCGACCGTTACTTCCGGAGTCGCTCCCTCTCCAACAACAGAAGGAACGTGTGGTTCGCGGAATTTTGGGAAGAAAACTTTGCGTGCAAGTTAGGGATGCATGGCAAGCGACCTGGGAGCCCCAAGAAATGCACAGGACTGGAGAAGGTGGGTCGTGACTCAACCTATGAACAGGAGGGGAAGGTACAGTTTGTGATGGACGCGGTTTATGCCATGGCCCACGCCCTACACCGCATGCACCGCGAGCTCTGCTCAGGGAACATAGGCCTGTGCCCACGCATGCACAACATTGACGGCAAGGAACTGCTGACCTTCATCCGGGCAGTAAACTTCAATGGAAGTGCTGGGACTCCTGTCACATTTAATGAGAATGGCGATGCTCCAGGACGCTATGATATCTTTCAGTACCAGATCAACAACAGGTCAACAGCAGAGTACAAGGTCATCGGCCACTGGACCAACCAGCTACACCTAAATATGGATGCCATGCAGTGGACCAGTGGAGACCCCTCTGTGCCCGCCTCTGTGTGCAGCCTGCCCTGCaagatgggtgagagaaagaaGGTGGTGAAGGGAGTACCATGTTGCTGGCACTGCGAGCGCTGTGAGGGCTACCACTTCCAGGCCAGTGCGTTCATTTGCGAGCTGTGCCCATATGAGCAACGACCCGACCAGAACCACACTGGGTGCCAACCTATCCCCATCATCAAGCTGGAGTGGCACTCACCCTGGGCAGTGGTGCCAGTCTTCATCTCTGTCCTGGGCATTCTGGTTACCACCTTCGTCATTGTCACCTTTGTGCGCTACCACGACACGCCCATTGTCCGAGCCTCGGGCCGGGAGATGAGCTATGTTTTGCTTACTGGTATCTTTCTGTGCTATGCTATCACCTTCCCCATGATCGCAGCCCCTGACGTTGCCGTTTGCTCCATCAGGCGCATCTTCCTGGGCCTGGGTATGTGCTTCAGCTACGCAGCTTTGCTTACCAAAACAAACCGCATCCACCGCATCTTCGAGCAGGGCAAGAAGGCTGTTACTGCACCACGGTTCATCTCCCCGGCCTCCCAGCTGGTCATTACCTTCAGCCTGATCTCAGTTCAGTTACTGGGTGTTTTTGTGTGGTTTGCCACTGACCCGCCACACATGGTGGTGGACTATGGTGAGCAGCGCACGCAGGACCCTGAGAACGCCCGTGGGGTGCTCAAGTGTGACATCTCGGACCTCTCACTCATCTGCTCGCTTGGATACAGTATTCTCTTGATGGTCACATGCACTGTTTACGCCATCAAGACCAGGGGAGTGCCAGAGACCTTCAACGAGGCAAAGCCTATTGGATTTACTATGTATACTACCTGTATAATTTGGTTAGCTTTTATACCTATCTTCTTTGGGACGGCACAGTCAGCAGAAAGGATGTACATCCAGACAGCCACGCTGACCATCTCCCTCAGCCTGAGCGCCTCCGTCTCTCTGGGGATGCTCTACATGCCCAAGGTCTACATCATCATCTTCCACCCGGAGCAGAATGTTCCCAAGCGCAAGCGCACCTTCAAGGCCATCGTCACCGTCGCTACCATGACCAGCAAGCTGTCCCAGCTGGCCTCCGAGCGACCCAACGGAGAGGTGAAGACAGAAATCTGCGAGGGCATGGATGCCAGTATGCCATCAACCAAAACAAAGTATGTCAGCTACACCAATCATGCCATCTGAAGAGAGAAGCACTGAATAGAGAATTACTGAGGAATTCCACATGCAGACTTGGATGTGTCAGATTCGCCCATGACAGGGCGTTACAACAAGCATGAGACATTGATATTGCTCAGAGTCCAAATAACGACTGAGAGCATGGCAGTCAACATAAATATGTCTGCTCTTTCATGTTCACAGACAGAGCTAATGGGCCTGCTGGAAGCAgacaaaacactaaacaaacaattCAAGAGACTTGACAAAATGAGGGTGGGGAACAGAAGAGGAAAACAAAAGAGAATTTAAATAGAAATTGTTGCGATCAACCATGTTAGTTAGTTTGTTATTCTAATTTTATGTATTTTGTGGTTGTGAAGATTTCTCATTCGTGTCTTACGTCGTCTGAACTACATTGCGAGATGAGTTTGTCTCTGTATCAGCTAACTGAATTGTAGCCTTGAGTTGTGAAATCTGTAAATGCAATGGTTTAAGCATGCACATTTTTATACAAATACTTTATTTATAATAAAGGAATGTTTTGGAAATGTTTAGGATTGTTGGATGAGGTTAAATATGAGAGTGGGATATGATGTATGTGGTTTACCTCAATTTAGATGGAAATGATACCCAATGCATCATCCATAAGGCATAACAGTTATGTGATGGCCTTGACCTGAATTGAGCACACATCCAAAATACACCAGGATGGTAAGTAGGCAAATTATGTTAAGAATGTATGAAGCCTTAAAGCAAACTATGAAAAATATCTAGAGCACCCCAAAAACTCCATGGTCTCAAATCAAAACAAACAATATTGCTGTAGGATTTCCCCTGAAGCAAACTATATACAGTCGTGGCAAAATAATTTGAGTATTACTGTGAACATAATGCAAATGTTTAGTTTTAACATTTTACttaaacctgagaaaaaaaaatgGGGCTGGACTGACTTTTGGactgccagagaatttaatattaatttctctaccgtaaACTGCCTCAGTAGTAATTGGAATTGAATTGAATATTCAATTGCAATTACTACTGCATTGCAACATTTTCTACTTTTGTGTTTCGGATTTCCTTCTCTCTCATATCATTTTTGTTACATTAGGTTTTTGTCCTGTTCAAAATAGCACAAATGAGTGCCAAAAAacagtacagtggcttgcgaaagtattcaccccccttggcatttttcctatttagtTTCCTTACAAAATATAATTTcaggggggtttgtatcatttgatttaaacaacatgcctaccactttgaagatgcaattttgttgttgttgtgtgtaacaaacaagaaataagacaaaaaaatctGAACTTGAGTGTGGATAACTATTCACTCACCCAAAGTCAAAGcaccagctccttcaagttggatgggttccgatGGTGTACAGCAGTCTTTAattcataccacagattctcaattggattgaggtctgggctttgactaggccattccaagacatttaaatgtttcccctt
>XM_036951948.1
CATGCCACCATGCACTCTTTGGGCTAGGCAAACACTCTGAGCATGAATTATATGAATTCGTCCTAAATAGTCCCTGCACACGTTTTCATGTGTGGTCATGGGTTATGGTGATTTGaaacagtcaattgaaataaactgCTCAGTATGTACAGCAACAACTAACAAACATCAGAGAAGCATTAGGTAGCACAGAGTTGGAAAACCAATCACCGTCGTGTGGGAGTACTGGGTGATTCCACGAGACAAGAAACGCGCTCGGGCTTCCTATGGTGTTTTTTCAGCACTATGAGCACAAGCTTGCGCCGCATTGGTGTGGCAGTGAGAGCGCGAAGGACCTGATCTGAGTAACCCGCAGGGTCTTTTGAGCATGTGATGCCAAGGATTGCAGAGAGATCAACACTGTCCAGCCAGTGTGAGAAACTcagcctctcttctctccagctcCCTTATATCACTCAAACTGCACCCCCTTCCCAGTGATGCCAGGAACATGCATCATCAGCTCTTTGAAACCAAGAGGTAAtcatccctaaccctaccctGATTTAGAGAGGGGCACCCATGGTACGCCCCACCCTGTGcacccaccaccacccaccagcTGCCTGCTGCTCCGATCTTCCAGTGCTACACCATCCCTCCCCTGACCCACTATCCCACTCACCCGCACTGCTACCACCATGGCCAGGGAGTccaaacacccctccctctcccgttATTGCTTCCTCTTCCTACTGACTACCAAATGCTACTGGCTGTTGGTCTCTGCCACTCAGAAGGTCTCGGACCCGCAGCTGCCTCTGCAGGAGTACGCCCATTCTATCCGGCTGGACGGTGACATCATGCTGGGTGGCCTATTCCCTGTGCACTCCCGTGGCGAGAGAGGAGTGCCCTGCGGGGAGCTGAAGAAAGAGAAGGGCATTCATAGGCTGGAGGCCATGCTGTTTGCCATTGACCTGATCAACAAGGACCCAGAGCTGCTACCGAACGTGACCCTGGGGGCGCGCATCCTGGACACGTGTTCCAGAGACACCTATGCCCTGGAGCAGTCACTGACCTTCGTTCAGGCACTCATCGAGAGGGATGGCTCAGACGTGCGCTGCGCCAACGGGGACGCACCCATCTTTGCCAAGCCGGATAAGGTGGTGGGGGTCATAGGGGCAGCGGCTAGCTCGGTGTCCATCATGGTGGCCAACATCCTGCGGCTCTTCAAGATCCCTCAGATCAGCTATGCATCCACAGCGCCCGAGCTGAGTGACAACACACGCTACGACTTCTTCTCCCGTGTGGTGCCACCAGACTCCTACCAAGCTCAGGCCATGCTGGACATCGTAACGGCGATGGGCTGGAACTATGTGTCGACCCTGGCCTCAGAGGGGAATTACGGTGAAAGTGGCGTGGAGGCTTTCGTCCAGATCTCCAGAGAGTCTGgtggTGTGTGCATTGCCCAGTCTCTGAAGATCCCCAGGGAGCCCAAGCCGGGGGAGTTTGACAAGCTTATTCTGCGATTGCTTGAGACCTCCAACGCCCGAGCCGTCATCATGTTTGCCAATGAGGACGACATTagGCGTATCCTGGACGCGGCCAAACGCAACAACGAGACTGGTCACTTCCTTTGGGTTGGTTCAGACAGCTGGGGGTCCAAGATCTCCCCTGTGGTCCAGCAGGAGAGAGTGGCAGAGGGGGCCATCACCATCCTCCCCAAGAGAGCCTCCGTGGACGCCTTCGACCGTTACTTCCGGAGTCGCTCCCTCTCCAACAACAGAAGGAACGTGTGGTTCGCGGAATTTTGGGAAGAAAACTTTGCGTGCAAGTTAGGGATGCATGGCAAGCGACCTGGGAGCCCCAAGAAATGCACAGGACTGGAGAAGGTGGGTCGTGACTCAACCTATGAACAGGAGGGGAAGGTACAGTTTGTGATGGACGCGGTTTATGCCATGGCCCACGCCCTACACCGCATGCACCGCGAGCTCTGCTCAGGGAACATAGGCCTGTGCCCACGCATGCACAACATTGACGGCAAGGAACTGCTGACCTTCATCCGGGCAGTAAACTTCAATGGAAGTGCTGGGACTCCTGTCACATTTAATGAGAATGGCGATGCTCCAGGACGCTATGATATCTTTCAGTACCAGATCAACAACAGGTCAACAGCAGAGTACAAGGTCATCGGCCACTGGACCAACCAGCTACACCTAAATATGGATGCCATGCAGTGGACCAGTGGAGACCCCTCTGTGCCCGCCTCTGTGTGCAGCCTGCCCTGCaagatggATGTACATCCAGACAGCCACGCTGACCATCTCCCTCAGCCTGAGCGCCTCCGTCTCTCTGGGGATGCTCTACATGCCCAAGGTCTACATCATCATCTTCCACCCGGAGCAGAATGTTCCCAAGCGCAAGCGCACCTTCAAGGCCATCGTCACCGTCGCTACCATGACCAGCAAGCTGTCCCAGCTGGCCTCCGAGCGACCCAACGGAGAGGTGAAGACAGAAATCTGCGAGGGCATGGATGCCAGTATGCCATCAACCAAAACAAAGTATGTCAGCTACACCAATCATGCCATCTGAAGAGAGAAGCACTGAATAGAGAATTACTGAGGAATTCCACATGCAGACTTGGATGTGTCAGATTCGCCCATGACAGGGCGTTACAACAAGCATGAGACATTGATATTGCTCAGAGTCCAAATAACGACTGAGAGCATGGCAGTCAACATAAATATGTCTGCTCTTTCATGTTCACAGACAGAGCTAATGGGCCTGCTGGAAGCAgacaaaacactaaacaaacaattCAAGAGACTTGACAAAATGAGGGTGGGGAACAGAAGAGGAAAACAAAAGAGAATTTAAATAGAAATTGTTGCGATCAACCATGTTAGTTAGTTTGTTATTCTAATTTTATGTATTTTGTGGTTGTGAAGATTTCTCATTCGTGTCTTACGTCGTCTGAACTACATTGCGAGATGAGTTTGTCTCTGTATCAGCTAACTGAATTGTAGCCTTGAGTTGTGAAATCTGTAAATGCAATGGTTTAAGCATGCACATTTTTATACAAATACTTTATTTATAATAAAGGAATGTTTTGGAAATGTTTAGGATTGTTGGATGAGGTTAAATATGAGAGTGGGATATGATGTATGTGGTTTACCTCAATTTAGATGGAAATGATACCCAATGCATCATCCATAAGGCATAACAGTTATGTGATGGCCTTGACCTGAATTGAGCACACATCCAAAATACACCAGGATGGTAAGTAGGCAAATTATGTTAAGAATGTATGAAGCCTTAAAGCAAACTATGAAAAATATCTAGAGCACCCCAAAAACTCCATGGTCTCAAATCAAAACAAACAATATTGCTGTAGGATTTCCCCTGAAGCAAACTATATACAGTCGTGGCAAAATAATTTGAGTATTACTGTGAACATAATGCAAATGTTTAGTTTTAACATTTTACttaaacctgagaaaaaaaaatgGGGCTGGACTGACTTTTGGactgccagagaatttaatattaatttctctaccgtaaACTGCCTCAGTAGTAATTGGAATTGAATTGAATATTCAATTGCAATTACTACTGCATTGCAACATTTTCTACTTTTGTGTTTCGGATTTCCTTCTCTCTCATATCATTTTTGTTACATTAGGTTTTTGTCCTGTTCAAAATAGCACAAATGAGTGCCAAAAAacagtacagtggcttgcgaaagtattcaccccccttggcatttttcctatttagtTTCCTTACAAAATATAATTTcaggggggtttgtatcatttgatttaaacaacatgcctaccactttgaagatgcaattttgttgttgttgtgtgtaacaaacaagaaataagacaaaaaaatctGAACTTGAGTGTGGATAACTATTCACTCACCCAAAGTCAAAGcaccagctccttcaagttggatgggttccgatGGTGTACAGCAGTCTTTAattcataccacagattctcaattggattgaggtctgggctttgactaggccattccaagacatttaaatgtttcccctt
>TU188625
TATGAGCACAAGCTTGCGCCGCATTGGTGTGGCAGTGAGAGCGCGAAGGACCTGATCTGAGTAACCCGCAGGGTCTTTTGAGCATGTGATGCCAAGGATTGCAGAGAGATCAACACTGTCCAGCCAGTGTGAGAAACTcagcctctcttctctccagctcCCTTATATCACTCAAACTGCACCCCCTTCCCAGTGATGCCAGGAACATGCATCATCAGCTCTTTGAAACCAAGAGGTAAtcatccctaaccctaccctGATTTAGAGAGGGGCACCCATGGTACGCCCCACCCTGTGcacccaccaccacccaccagcTGCCTGCTGCTCCGATCTTCCAGTGCTACACCATCCCTCCCCTGACCCACTATCCCACTCACCCGCACTGCTACCACCATGGCCAGGGAGTc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567226.2 False 4918 mRNA 0.49 11 59402177 59643249
XM_036951948.1 False 4055 mRNA 0.48 11 59402177 59643249
TU188625 True 410 lncRNA 0.37 2 59402461 59409982

Neighbor

gene id symbol gene type direction distance location
LOC118937284 LOC106609580 coding upstream 12074 59387950 ~ 59390103 (+)
LOC110492721 LOC106561036 coding upstream 368810 58797383 ~ 59033367 (+)
LOC110492681 LOC106561133 coding upstream 1079626 58316277 ~ 58322551 (+)
LOC110492647 LOC106561039 coding upstream 1105431 58253604 ~ 58296746 (+)
LOC110492604 LOC106561042 coding upstream 1290997 58110123 ~ 58111180 (+)
LOC110492759 gpr37 coding downstream 130914 59774163 ~ 59781857 (+)
LOC110501704 wasl coding downstream 256881 59900130 ~ 59922883 (+)
iqub iqub coding downstream 326457 59969706 ~ 59977321 (+)
LOC110501720 cadps2 coding downstream 342816 59986065 ~ 60251097 (+)
LOC110492825 fezf1 coding downstream 619450 60262699 ~ 60267392 (+)
G165409 NA non-coding upstream 20389 59316180 ~ 59381788 (+)
G165441 NA non-coding upstream 36550 59364039 ~ 59365627 (+)
G165404 NA non-coding upstream 91958 59310016 ~ 59310219 (+)
G165397 NA non-coding upstream 101481 59299739 ~ 59300696 (+)
G165395 NA non-coding upstream 103040 59298892 ~ 59299137 (+)
G165946 NA non-coding downstream 156809 59800058 ~ 59800342 (+)
G165967 NA non-coding downstream 193577 59836826 ~ 59837031 (+)
G165971 NA non-coding downstream 198166 59841415 ~ 59841623 (+)
G165974 NA non-coding downstream 199820 59843069 ~ 59843273 (+)
G165979 NA non-coding downstream 207668 59850917 ~ 59851116 (+)
G163660 LOC106561040 other upstream 1185794 58215677 ~ 58216383 (+)
G163513 LOC106561046 other upstream 1470186 57928150 ~ 57931991 (+)
G162130 NA other upstream 2348535 57048314 ~ 57053642 (+)
G161687 NA other upstream 3149579 56245044 ~ 56252598 (+)
G160569 NA other upstream 3454932 55946143 ~ 55947245 (+)
G166131 lmod2 other downstream 302459 59945708 ~ 59953165 (+)
G166878 NA other downstream 872383 60515632 ~ 60515880 (+)
LOC110493059 LOC100194658 other downstream 1208183 60851417 ~ 60866455 (+)
G167288 NA other downstream 1419344 61062593 ~ 61074591 (+)
G167325 LOC106561003 other downstream 1588947 61232196 ~ 61232545 (+)
LOC118941102 NA coding downstream 62189 59472171 ~ 59477345 (+)
G165496 NA non-coding downstream 39567 59449549 ~ 59449785 (+)
G165501 NA non-coding downstream 44618 59454600 ~ 59454807 (+)
G165510 NA non-coding downstream 61915 59471897 ~ 59472121 (+)
G165514 NA non-coding downstream 73699 59483681 ~ 59483951 (+)
G165516 NA non-coding downstream 76888 59486870 ~ 59487197 (+)

Expression


Co-expression Network