iqub (iqub)


Basic Information

Item Value
gene id iqub
gene name iqub
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 59969706 ~ 59977321 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952045.1
AGCACTTGCTGCACAAACAGCAGTCGGTTGCGGTTGAAAATACACAGGGAAATAAAAGCTAGCGTGCTTCTATCCAGCGTGCTTATCGACATAACTGGcaacaaaaataaattaaattcaaAATCCACTCACTTTTACTGACGCTTAAAAACTTATTTTTCCCACTATTGCTGTCAGCGGCTAACTAGCTACGTGTCATGTCCGAAGAAGACGCAGAAACGTCGGGGCTCAACGGGATTGCTGatgaacaaaatgtgaaaaaagagGGGATAGGTCTTGAAGCAAAATTAGATGAATCTCAGGTTGAAAGCAACACCACTGAACACCCGCTTCCAGATGTACAAGATAGCGATACTGGAGTAAAGACTGAAACTGGCGAGCTGGTGGGGGAAACGGTGCACAAGTCAACTTTTTTGACATCAGGTGAGGAGGACACAGTGGAGGCGACAGCTCAAGCGGACCTTCCTGAGGACAGCATGCAAGATGGAGCATCACCAAAGAAAATAACTTTTTCTAATGAAGTTGGGAACTCAACAGCCACTGTGAAGATCATGCTGATGCCGGAGGGACACATGATGACGATGGCCTTTGCAATTGGGCTGACCGTCAAGGAGTTGAAGTATCACTTCGCAACTGAGCTGAAAGTGCCATCAGAACTCATACAGATTTCTCAGAGCGGTAGGATGGTAGAGGACCATAGGACCCTGATAGAGCTGGGAGTGCAGCCTCATGGCACCATCCAGTTGGAGATGACCTCGTCTGACCCTGAAAACCACCCCATCCGTCCTGTCAAGCCCCAGCAGGACTACAACATGCCTGACGTAATCACTGTCCGTGTCCAGACAGacccagagacagagacattccaGGATGTGGTGGTGGAGATTGAGAGGGCCACCCATAGGAAGGCTTTCCTGGGAGGCTACAGACACAAGGCCACAGAGACCGAGTACCACCATGCAGCTGTACAGACCATAGCTAAGAGGAAACCCATTAGGGGGGTGGGAACCTTCAGCCGCGATacacagACAGTGACGGTGAAGAGCCAGTCCCAGCAGTGCACCAACAGCACATCCACCCAGATGACCAAGATCGGCTGCTACGTGTCCAACATGGAGGACAAGCTCATCTCCCCTGGCTCCTACATCACTGCCGCCCAGTACCATAGCAAGAGACTGAGAGCTGTGATCACTCTGCAGATGTACACGCGGCGCTGGCAGGCCAAGCGGATGACGGACCAGCTGAGGCAGGACAGGGAGCTGCGTCTGgcctggatggagagagaggggaggaggaagagggaggagaaagaggagcagaTCAAGGCTGAGTACCACAGGAGGATGAACCCCCAGTGCAGGGACGACTTTGCCCTGCTCTACAGTGCCCTGGAGAagtggaggaaagaggaggtAGAGCACATCGATGCCACTCTGGATGGTGCTGAGAGGAAGGCTGCTCTGTGTGCGCTACTGGAGCAGGAGAGCCAGCTCATTGCCTCCATCGGACGCCACCGCATCGCCGCTGGAGAGAGGAATTACGACAAGGCCGTGCAGGCCTTCCTTGAGAAGTGTGCTGCCCCTAAGAGGTGGCGTGCATTCGATGGGAAGATGACCCAGGTGGACACCCAGTACACCATCAGAGCCAAGGAACTGAGAGACCTGTACTCCAGCATCAACCTGCACTACCTCAACCAGGAGGAGAGGCTTGACGTGCTGCTCACACTCAAACACACCGTCAAGGAGCACGACTGCAAGCTGACCCAGAACATTGTGGAGTTGATTGACAGGGAGGCGGACCTCCTGATGAGGGGGGTAAAGGAGACCAATCTGGAGGGGCTGAGGAAGAGAATCTCCACCCTCTTCCTCCAATACATCAAAACCCCCACCTTTAACCCAGAGGTGGCCAAACTGCTAAAGGTCCCCCAGGACCCAGCCCAGTTGAGGAAGAACATCTACTTCTGCCGCGGCTGCAGCCGCTACCTGCTTTCCACTGACTTTGCACTTACGGCCAATGCTCGCCTGGTAGGCAAGTGTCGCAGTTGTTCGGAGCTGGACAACGAGGCTCGCCGCCGCGAGGACTTCTCCCACTACAAGACCATCCTCAGGAGGCTCCGCAAGACTGAGGCTCAGAGGAACAAAGAGGCCAAGATTACCTACctgctgcagGAGCAGGACCTGCggtacctggtagatgtagtgtgGGGGGCCCAGTCGGCCCTCAGTGCGTGGAGCGACATGCATGACTTGGTAATGGTGAGGTGGGATTGCCAGTGGGAGTGGAGTCCCTGGAACTGCATCCTGCTCACCAAGGGAGAAGCTGCTGCTCACATCAAAATGGAGAACATTGagaagGCCTATGGAGTGGTGTTCATTCGGAAtgttaaacacagacacacagtggcAAAGAAATACTTCTCCAAGATCCCCGTCATGGCCAAATACCTCCAGGAAGTGGACTTGCAATCAGCCACCCACGGTAACCTGTTAGTCGCCAAGCCCATCAACACGGTGACAGCCAGGATCCTGACTACCATCCCACAAGCCGCTGCTGGCAAGGCCACGCAGTGAAGCCCTGTTCCTCCCTCTtcccgtctctgtctgtccccctttCCCCTCTTCCTCACCGTCTCTCTTGTATGTCAAATAAAAATAGTGTATTTGATGATCATTGAACTGGTTTGGCTTTTGGAACTTTGAAATGGATGTCTAATTTAATGATAGAAGTGATGATATTAAAtaaatactgtaaaatacaa

Function

symbol description
iqub Predicted to be involved in cilium assembly. Predicted to be active in acrosomal vesicle and motile cilium. Orthologous to human IQUB (IQ motif and ubiquitin domain containing).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K24838 IQUB; IQ and ubiquitin-like domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952045.1 True 2758 mRNA 0.53 12 59969706 59977321

Neighbor

gene id symbol gene type direction distance location
LOC110501704 wasl coding upstream 46983 59900130 ~ 59922883 (+)
LOC110492759 gpr37 coding upstream 187849 59774163 ~ 59781857 (+)
LOC110492752 LOC106561032 coding upstream 326457 59402177 ~ 59643249 (+)
LOC118941102 NA coding upstream 492361 59472171 ~ 59477345 (+)
LOC118937284 LOC106609580 coding upstream 579603 59387950 ~ 59390103 (+)
LOC110501720 cadps2 coding downstream 8744 59986065 ~ 60251097 (+)
LOC110492825 fezf1 coding downstream 285378 60262699 ~ 60267392 (+)
LOC110501735 NA coding downstream 297063 60274384 ~ 60288852 (+)
LOC110492846 LOC106561021 coding downstream 421555 60398876 ~ 60406820 (+)
syt8 LOC106561125 coding downstream 650617 60627938 ~ 60639516 (+)
G166122 NA non-coding upstream 96885 59872367 ~ 59872821 (+)
G166121 NA non-coding upstream 98608 59870810 ~ 59871098 (+)
G166120 NA non-coding upstream 99236 59869996 ~ 59870470 (+)
G166119 NA non-coding upstream 101529 59867904 ~ 59868177 (+)
G166259 NA non-coding downstream 89984 60067305 ~ 60127600 (+)
G166370 NA non-coding downstream 284257 60261578 ~ 60261804 (+)
G166381 ptprz1 non-coding downstream 318430 60295751 ~ 60296886 (+)
G166431 NA non-coding downstream 402453 60379774 ~ 60380051 (+)
G166131 lmod2 other upstream 16541 59945708 ~ 59953165 (+)
G163660 LOC106561040 other upstream 1753323 58215677 ~ 58216383 (+)
G163513 LOC106561046 other upstream 2037715 57928150 ~ 57931991 (+)
G162130 NA other upstream 2916064 57048314 ~ 57053642 (+)
G161687 NA other upstream 3717108 56245044 ~ 56252598 (+)
G166878 NA other downstream 538311 60515632 ~ 60515880 (+)
LOC110493059 LOC100194658 other downstream 874111 60851417 ~ 60866455 (+)
G167288 NA other downstream 1085272 61062593 ~ 61074591 (+)
G167325 LOC106561003 other downstream 1254875 61232196 ~ 61232545 (+)
LOC110510683 LOC106560954 other downstream 1554268 61525283 ~ 61535728 (+)

Expression


Co-expression Network