LOC110502143 (LOC106573336)


Basic Information

Item Value
gene id LOC110502143
gene name LOC106573336
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 81029341 ~ 81031876 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110502143
ATGGAGAAGGGGAACGTGGTCTACTTCATTGACTCAGCCACAAAAACCTCCTACTTCACCTGCTCTCACGTGGGGGGGAGCTGGGGGCTCATCAAGAGCTCCACCTCCTGTGCCACGCATCAGGACCAGTCCTTTGAGTCATGCTTCGAGAGTGGCAACCTGCAGAAGGCAGTTCAAGTtctaccccccctctcccacTTACACAGTGGTGTCCATAACTACAAGCTCACCCTGCACACTGATATGTACACCACCAAGCACACGCAGTGGAGAGTACTTCCGGGTCAGAAACATGAAGGCTAGCAGTCTGTACTGCACAGGCATGAGGTCCATGCTCTACTCTGAGATAGCCGCCTGGGAGAAGGGACGGCTGGCACCGGACTGCCTCAAGCATCAGGTACTACCACAACCAGCATCATAAGGCTGAGCaggacaacaacaccaccacGAACATCAAATCCCTCACCTGGACCTGCCAGTTCCCCTATGACAGACACCTATCTGGCCCACTGCTAACCTTAACACCTACTCCCACCTGCAGTGCTACCTCAGCCGCCTCAACTCCAATTCGGCCACCGCCGGCTACTGCAAGCTGCGGGTGCATTGCCGCAGCCTGGCCGGCAACGTTGTACATGTGCTGACAGTGACGCCGCCGGGAGGAGGGTGGGCGGAGAGGATTGCCAAGCAGGTGGTGGTTGTGACGGCCGGGGTGCAACCCGGGGAGAACAACAGCTCCTGGTTGATGCAGGGATTCTTGGACTTCCTGCTGGGAGTCGGACGACACCAGGCAGCTGAGGGAGATCTTTGTGTTTAAAGTCGCTTATGCACTTTTGACTTTTTTATCTTTGAAAATAACCAAGTATTTCAGTTATGTGTTTGATTGCCATGTGGGATAAATGTACGTTTTCCATTCAGAATTAGAAACACATCATAAAGAGACCCCATGATGTTGATTGTTGTGTGGCTCCCTTGCGGACCTGCAGGTGATGCCTATGCTGAACCCAGACGGGGTGGTGAACTACTACTGATCTCTGGCCGGCAGGGACCTGAACAGGAACTACAAGACtctgctgagggattccttcCCCTGCGTCTAGCACACCAGGAACATGGTCAATAGGCGAGAGGGGGGAAGTGGGAGGATACTCAAACAGATGTGAGAGAGTCATGCCTCTCTAACCTACGTAGAGGTTTAAGTTCAGTCTGCCTTCTCTGACCTTGTTGCTATGGTTTCCCATCTGTCCTCGTTGTTGTCATTGCACCCAAAACTGATGGCTGAGAGAGATGTGGTGCTGTATTGATTTTCAGTCACAGTCATAAGAACAATGTCTTCATGTGCGGCTGTACCAACCGCGATGATGCCACACAATGGCTCCATGAGAGAATCTTCCCTCCCATGATGAGCAAGAACGTCAATGACAAGGTTCGAATCCCATTGAGTTAAAGAAAATCTTGGCCAACGGTagctgtggtcagagagaagagagagagaaggtatggATGAGAGAGAAGTTCACTCTTCCTCATTTGTTTAGACTGATTGTGGCTTGTGCATTACCCCAGAACCTAATTTCTAAAGACAGTACACTCCTGGATCCCCCATCCCACCACTCGCATTGGTGTCATAGGCCATGTGACCCTCTGGCAGGAGGAGGAGTCAGAAGGTAATGGCTGTCAATTACCCTTCAAGCCCTACTGCATCTTGATAGTTTGCAGTGTTACTAAAATACTGTTACAGGTACATTCATCTCAAGGTGTTTTACAACAACCTGGGCCTTGACCTCCCAAACCTGTTCTTAGTAGGCTGATGCACTCTGAACATCCCCACCTCATCAAACTTAAAAGGCATGAATAAGTGATGACCACTGTTTTGTGCCAGTGTGATGGTCAGCATTAACTGTGTTCCAGAATGAATACCTGGAGGCTGAGGGCTGCATACCTGTTGAGTGGGGCTCGTGCTCACCCTACTCAGCCACCTATCACAGGTGTGGAGGATAGAACCTTATCATTAGGAATGGATTTTGTTTTATGACTtcaccaattttttttttaaccaaatttGAGTTTTTCTGCTGAATGTGGCTCTGATGTTTGTCTTCCTCAGAGGAGCAGCGGCAGTATCAGTCACCAGCTGCAGTTTGGCTCCTCCCAGCCTCCACGGTCGGCCCCTCAGCAGTTGCCCCTATCTGTCACGGCCATAGAGCAATGCGGCCTCTCCATGCCTGTTATGCAGCAGCAGCCCATGCCCTTCAGCCCCGATCACAAAACCAACACTGAGATGAGAGGTTGGGTTTGAGCCagagg

Function

NR:

description
cytosolic carboxypeptidase 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110502143 True 2304 mRNA 0.51 3 81029341 81031876

Neighbor

gene id symbol gene type direction distance location
LOC110497237 rccd1 coding upstream 34472 80988887 ~ 80994869 (+)
furinb LOC106561302 coding upstream 52028 80780059 ~ 80977313 (+)
rag2 rag2 coding upstream 301806 80724360 ~ 80727535 (+)
LOC110497165 lrrc4c coding upstream 981159 79916922 ~ 80048182 (+)
LOC110497158 LOC106573351 coding upstream 1793432 79177028 ~ 79235909 (+)
LOC118942351 NA coding downstream 123 81031999 ~ 81033476 (+)
LOC110497304 LOC106561285 coding downstream 17630 81049506 ~ 81055428 (+)
LOC110497314 cfap44 coding downstream 26308 81058184 ~ 81080502 (+)
LOC110497320 paf coding downstream 51880 81083756 ~ 81086188 (+)
csnk1g1 LOC106561286 coding downstream 71427 81103303 ~ 81173090 (+)
G191167 NA non-coding upstream 104619 80914300 ~ 80924722 (+)
G191024 cssa10h11orf74 non-coding upstream 306761 80721510 ~ 80722580 (+)
G191025 cssa10h11orf74 non-coding upstream 320611 80708098 ~ 80708730 (+)
G191028 NA non-coding upstream 325014 80704097 ~ 80704327 (+)
G191402 NA non-coding downstream 303202 81335078 ~ 81335608 (+)
G191405 NA non-coding downstream 310588 81342464 ~ 81342689 (+)
G191406 NA non-coding downstream 311752 81343628 ~ 81343850 (+)
G192071 NA non-coding downstream 505249 81537125 ~ 81537623 (+)
G191057 accs other upstream 262627 80765332 ~ 80766714 (+)
G191052 NA other upstream 272694 80755141 ~ 80756647 (+)
LOC110497055 LOC106561315 other upstream 2449279 78578149 ~ 78580190 (+)
LOC110496993 LOC106561317 other upstream 2522409 78467699 ~ 78519071 (+)
G187320 LOC106561323 other upstream 2759296 78267289 ~ 78270045 (+)
LOC110497665 LOC106561427 other downstream 1334409 82366183 ~ 82393779 (+)
G193170 bhlh3 other downstream 1369237 82401113 ~ 82403835 (+)
LOC110497686 NA other downstream 1386370 82417794 ~ 82426875 (+)

Expression


Co-expression Network