LOC110497304 (LOC106561285)


Basic Information

Item Value
gene id LOC110497304
gene name LOC106561285
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 81049506 ~ 81055428 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573350.2
AAACGAAAGTGATCTCAGATATCATTCTGCTCaagctgtgtttgtgtgcaaCAAAATGGCAGAGGCCATTTTAAAAGACCAAGATCCGTTCTTTTGTTCAATATGCTTGGATCTACTAAAGGATCCAGTGACTATACATTGTGGACATAGCTACTGTATGGGTTGTATCAACGGCTGCTGGGATCAGGATGATCTGAAAGGAGTCTACAGCTGTCCCCAGTGCAGACATACCTTCACCCCAAGGCCTGTTCTGAACAGGAGCACTGTCTTGGTTGAAGTGGTGGAGAAACTGAAGAGGACAGGACCTCAAGCGTCATCTGCTCACTGTTATGCTGGACCTGAAGATGTGGAGTGTGATGTCTGCACTGGGAGAAAACACAAAGCTGTCAAGTACTGTCTGGTGTGTCTTGTCTCATACTGCGAGACTCATCTCCAGCCTCATTATGACTCGCTTGCCTTTAAGAAGCACAAGCTGGTCGAAGCCTCCACACAACGACAGGAGAAGATCTGCCCTCATCATGacaaactgctggaggtttaCTGCTGTACTGATCGGCAGTGTATCTGTCTGCTGTGTGTGATGGATGAACATAAAGGCCATGATACGGTGTCAGTTGCAGCAGAAAGGACTGAGAAACAGAAACAGTTGGGTAAAATACAGCAGCAGTACCACCAGAGAATCcaggagatggagaaggaggtacAGGAGCTTAGGCAGGCTGTGAAAACACTCACGCGCTCTGCACAGGTGACAGTGGATGCGACTGACAGGATCTTTATTGAGCTGATCCGCTCCATTGAGCGAAGGCGTTCTgaggtgaaggagctgatcaGAGCTCAGGAGAGGATTGCAGGGAGTCGGGTTCAGGGACTCCTGGACCGACTAGATCAGGAAGTCACTGAGATGAAGAGAAGAGATGCTGAGCTCAGGCAGCTCTCAAACACAGAGGATCACATCTATTTCCTTCAGagtttccagtcactctctgtccctcctggTTCTGAGGCCCTACCCAGCCCCACTTTCAATCCACACATTTCTTTTGAACGTGTGAAGAAATTGGTTTCTGGACTGAAAGTGCAACTGGATGGTATCTGCAAGGAGGAAATAGACAAGATATCTGAAAATGTGATGAAAGTGCAAATTGTTCGACCTCTGGAGCCCAAGACCAGAGAGGAGTTCTTAGAATATTCCTACGAACTCACGGTGGATCCTAACACAGCATGTGGAACACTGCATCTGTCTGAGAAGAACAGCAAGGTGACATGGAGTGAAGGGGAGACTCAAGCCTATCCTGATCATCCAGACAGATTTACCCACTATGACCAagtgctgtgtagagagggtttATCTGGAAACTGCTACTGGGAGGCTGAGCTTCGAGGCTGGATTACTGTGGCAGTCTCATATGTGGCTCttgtgaggaaaggagagggtaaTGAGTGTAGGTTTGGAGGTAATGATCAGTCTTGGAGTTTGGAATGCTCTCCCACCAGTTGTTCTTTCCTTCATGATAATGTTAAGACTAAAATACGATCCCATTGCAcctccagagtaggagtgtacctgGACTACAAGGCAGGAACTCTGTCCTTTTACAGCATTTCTAAAAAAGTGACCCTCCTCCACAGAGTGAATAACACATTCACTGAACCCCTCTATCCTGGGTTTGGGGTTGGTTTGGAATCATCTGTGAGGATAATGCTTCCCATGCAGTCAACatgatttttctgtgttttatatatatttccacactatgaggttagaataatactgtgaaattgtgaactgcatctcagtgcgaggcgtcactacagaccctggttcatttctagactgtatcacagccggccgtgattagga

Function

NR:

description
tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573350.2 True 1864 mRNA 0.47 6 81049506 81055428

Neighbor

gene id symbol gene type direction distance location
LOC118942351 NA coding upstream 16255 81031999 ~ 81033476 (+)
LOC110502143 LOC106573336 coding upstream 17630 81029341 ~ 81031876 (+)
LOC110497237 rccd1 coding upstream 54637 80988887 ~ 80994869 (+)
furinb LOC106561302 coding upstream 72193 80780059 ~ 80977313 (+)
rag2 rag2 coding upstream 321971 80724360 ~ 80727535 (+)
LOC110497314 cfap44 coding downstream 2756 81058184 ~ 81080502 (+)
LOC110497320 paf coding downstream 28328 81083756 ~ 81086188 (+)
csnk1g1 LOC106561286 coding downstream 47875 81103303 ~ 81173090 (+)
LOC110497399 rps17 coding downstream 122355 81177783 ~ 81185894 (+)
LOC118944145 NA coding downstream 125090 81180518 ~ 81180642 (+)
G191167 NA non-coding upstream 124784 80914300 ~ 80924722 (+)
G191024 cssa10h11orf74 non-coding upstream 326926 80721510 ~ 80722580 (+)
G191025 cssa10h11orf74 non-coding upstream 340776 80708098 ~ 80708730 (+)
G191402 NA non-coding downstream 279650 81335078 ~ 81335608 (+)
G191405 NA non-coding downstream 287036 81342464 ~ 81342689 (+)
G191406 NA non-coding downstream 288200 81343628 ~ 81343850 (+)
G192071 NA non-coding downstream 481697 81537125 ~ 81537623 (+)
G192082 NA non-coding downstream 502293 81557721 ~ 81558024 (+)
G191057 accs other upstream 282792 80765332 ~ 80766714 (+)
G191052 NA other upstream 292859 80755141 ~ 80756647 (+)
LOC110497055 LOC106561315 other upstream 2469444 78578149 ~ 78580190 (+)
LOC110496993 LOC106561317 other upstream 2542574 78467699 ~ 78519071 (+)
G187320 LOC106561323 other upstream 2779461 78267289 ~ 78270045 (+)
LOC110497665 LOC106561427 other downstream 1310857 82366183 ~ 82393779 (+)
G193170 bhlh3 other downstream 1345685 82401113 ~ 82403835 (+)
LOC110497686 NA other downstream 1362818 82417794 ~ 82426875 (+)

Expression


Co-expression Network