LOC110497665 (LOC106561427)


Basic Information

Item Value
gene id LOC110497665
gene name LOC106561427
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 82366183 ~ 82393779 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021573943.2
GCCTTGCGGTGTCACAGTTCCGATGAAATGTATTTACAAGCAAAAGTAATGAAATGGGGAGAGGCAATTTTCCGCAGCATATTGGTCAACCTGCAATGGCTATAGCAGGGACAGTGCATCGTTAAACTTTCAGCCAAGGATATCACAACGCTGCTAATTTTCTCATGATGCAGTTCTCTCTTTGCTGTGGACCGTGTCACGTTGTCGCAGTTCGTACAAGTGATATATAGGCTTGCGCCGATTCCATTCCTCTACAGAATCTATTTTTCCTAAACTTCAGTCCCGATAGAGACGACTGAGGGGGACTTCTGTTGGTGTTTCGGCACCTACAACACGAAGTGAGGTGGTGGCCAGCTGGAGCTTCCAGGAATGATGGGGCCAACCCACCGCAGCAGGCCCCCTCGCTGCACCTGACCTGGGTCACCTGACCTGAGTCACCTGACCCAGAATGGAGCTCAAGGTTTGGGTGGACGGGGTCCAGAGGGTCGTATGCGGGGTCACCGAGGTAACCACCTGCCAGGAAGTGGTCATCGCTCTGGCCCAGGCCATAGGCCGCACTGGGCGCTATACCCTGGTGGAGCAATGGCGAGACACAGAGCGCCACTTGGCCCCCCACGAGAgcccagtggcctccatcaacaCCTGGGGTCAGTATGCCGGTGATGTCCAGCTGATCCTGCACCGCACAGGCCCCTCCCTGACTGAACGCCCCCCTTCCGAGGGGCCCCCGCTTCGAGGCCCGGAACGCGGTCTCCACCGGCAGAGCCTCCCCCCACTTGCCAAGCTCCACCACCCCAGTGAGCGCTCCCTCCGCCGCCGTGAGCCGCGCCGGAAGTCCCTCACCTTCTCCGGGAGGCCCCGGGGCCTCCGGGACATCCTGAGTGGAGGCCGGGcttgggaggagagggaggccgAGGCCAAACGACGTCTCCTACTCCAGGGGAACGGTGGGAACcagaaccaccaccaccatgtagCAGCCGAAGCGGTAGCCCCAGGGAGGGCAGTGTCCCCCGGCATGTGGGCCTGCCGCATGGATGACTTGGTCAGACTGGTGGGGCTCCAGAGAGAGACTTTGGGTGTGCTGGAGAACAGGCTGGAGGCCTATGAGGCTGAGCTGCAGAcctggggtgggggtgggggagggggagaaggagaaggagggggagaggaggcaaGAGGAGCGGGAGGGCTGGTGGAGGAGATAGTGAGGCTGGAGAGACGACTGAGGAAGAAcgaggtggagatggaggaggaggagttctGGGCCAGCGAGCTGCAGATTGAGCTGGAGAGCGAGAGGCAGCTAGAGGACAAGCTTGAGGAGCTAACGGGACGTCTGCAGGGCGCTAAAATCGACCTGGGGGACAGGATGGTTCTGGTACAGGGTGTGGAAGCGGGTCTCGAGGAGGAGCGTCTGCGGTGGGAAAGACAGGAGACTCAGAGGGTGAGCGAGGTGGAGGCCAGGGCGCAGTTGCTTAGGGCCCGCACGGAACTCAAGACACAGGACAGACAAGCCGTCCAGCTAGAGAGCAGCTGCAGAGCCGTGGACAGGTCCCTGAGCCAGAGTAGCAAGAGAATGCAGGACATGCAGCATGAGCTGGAGCAGCTGACCAAGGAGCTGAGACAGGTCAACCTGCAGCAGTTCATCCAGCAGACTGGCACCAAGGTCACCGTGCTGCCAGCCGAGCCcagtgaggatgaggaggagactACCCACACCGGACAGGGCACAGGTCATTTACTTCAAATGAGCTAGATGCGTCGATCCTCTGTACTTGGTTCCTCTGTCCAGTTCCCTGAAGCGTCCAGTCTCCTCGATGCCCGGTCACCTTCGGGTCCTGCAAAGCCCGCTGACATCTGGCTTGAACCCAGAAGGGATCTACGTGTAAGAGGACACAGAGGGGGATAT
>XM_021573934.2
CCTTGCGGTGTCACAGTTCCGATGAAATGTATTTACAAGCAAAAGTAATGAAATGGGGAGAGGCAATTTTCCGCAGCATATTGGTCAACCTGCAATGGCTATAGCAGGGACAGTGCATCGTTAAACTTTCAGCCAAGGATATCACAACGCTGCTAATTTTCTCATGATGCAGTTCTCTCTTTGCTGTGGACCGTGTCACGTTGTCGCAGTTCGTACAAGTGATATATAGGCTTGCGCCGATTCCATTCCTCTACAGAATCTATTTTTCCTAAACTTCAGTCCCGATAGAGACGACTGAGGGGGACTTCTGTTGGTGTTTCGGCACCTACAACACGAAGTGAGGTGGTGGCCAGCTGGAGCTTCCAGGAATGATGGGGCCAACCCACCGCAGCAGGCCCCCTCGCTGCACCTGACCTGGGTCACCTGACCTGAGTCACCTGACCCAGAATGGAGCTCAAGGTTTGGGTGGACGGGGTCCAGAGGGTCGTATGCGGGGTCACCGAGGTAACCACCTGCCAGGAAGTGGTCATCGCTCTGGCCCAGGCCATAGGCCGCACTGGGCGCTATACCCTGGTGGAGCAATGGCGAGACACAGAGCGCCACTTGGCCCCCCACGAGAgcccagtggcctccatcaacaCCTGGGGTCAGTATGCCGGTGATGTCCAGCTGATCCTGCACCGCACAGGCCCCTCCCTGACTGAACGCCCCCCTTCCGAGGGGCCCCCGCTTCGAGGCCCGGAACGCGGTCTCCACCGGCAGAGCCTCCCCCCACTTGCCAAGCTCCACCACCCCAGTGAGCGCTCCCTCCGCCGCCGTGAGCCGCGCCGGAAGTCCCTCACCTTCTCCGGGAGGCCCCGGGGCCTCCGGGACATCCTGAGTGGAGGCCGGGcttgggaggagagggaggccgAGGCCAAACGACGTCTCCTACTCCAGGGGAACGGTGGGAACcagaaccaccaccaccatgtagCAGCCGAAGCGGTAGCCCCAGGGAGGGCAGTGTCCCCCGGCATGTGGGCCTGCCGCATGGATGACTTGGTCAGACTGGTGGGGCTCCAGAGAGAGACTTTGGGTGTGCTGGAGAACAGGCTGGAGGCCTATGAGGCTGAGCTGCAGAcctggggtgggggtgggggagggggagaaggagaaggagggggagaggaggcaaGAGGAGCGGGAGGGCTGGTGGAGGAGATAGTGAGGCTGGAGAGACGACTGAGGAAGAAcgaggtggagatggaggaggaggagttctGGGCCAGCGAGCTGCAGATTGAGCTGGAGAGCGAGAGGCAGCTAGAGGACAAGCTTGAGGAGCTAACGGGACGTCTGCAGGGCGCTAAAATCGACCTGGGGGACAGGATGGTTCTGGTACAGGGTGTGGAAGCGGGTCTCGAGGAGGAGCGTCTGCGGTGGGAAAGACAGGAGACTCAGAGGGTGAGCGAGGTGGAGGCCAGGGCGCAGTTGCTTAGGGCCCGCACGGAACTCAAGACACAGGACAGACAAGCCGTCCAGCTAGAGAGCAGCTGCAGAGCCGTGGACAGGTCCCTGAGCCAGAGTAGCAAGAGAATGCAGGACATGCAGCATGAGCTGGAGCAGCTGACCAAGGAGCTGAGACAGGTCAACCTGCAGCAGTTCATCCAGCAGACTGGCACCAAGGTCACCGTGCTGCCAGCCGAGCCcagtgaggatgaggaggagactACCCACACCGGACAGGGCACAGACTTGGTTCCTCTGTCCAGTTCCCTGAAGCGTCCAGTCTCCTCGATGCCCGGTCACCTTCGGGTCCTGCAAAGCCCGCTGACATCTGGCTTGAACCCAGAAGGGATCTACGTGTAAGAGGACACAGAGGGGGATATCTATGTTCCATGCCAGCTGGCCCCCTCACTACCAACCTAAAGGTAGCCTGCTTGGTAGTCAGGTCCCAAAACGGTTGTCTTTAGCCAACTCCTTTCCTATTCACTCCTAGTCAGGAGTTGGTTATATACAGATCTGGGATAAGACTAGCTCAAGGATGTAATAGCATGATACTTCAGTAACACTCTCCTGTCATGGATAAAGGACCTACACTTACACAGAGGATATGGCTAGAGGCCATTGTGTACAAGCACTCCTAGTCTCCCACATGGGACAACACATGATGATTGCTCCAACGATGAAGGGAAGACTATGGGTAACCTACCTGACTGCAGGATGGGGCACTTAGCTTGGATGAACAGTGTAgaaaacatcaggaacacctgctctttccatgacatagactgatcaggtgaatccaggtgaaagctatgaccccttattgatgtcacttgttaaatccacttcaattagtgtagatgaaggggaggagacgggttaaagaaggatttttaatccttgagacaattgagacatggattgtgtatgtgtcccattcacagggtgaatgggcaagataaaagatgtaagtgcctttgaacggaacGGTCTacagtagtaggtgccaggcgcaccggtttgggCATGTCAGGAACTGCaatgttgctgggtttttcacgctgaaCAGTTTCCAGTCTGTATCAAGAATCGTCCACaacccaaatgacatccagccaacttgacacaactatgggaagcattggagtcaacatgggccacatcttgtagagtccaggCCCTGacgaatttaggctgttctgagggcaaaaggggtgcaactcaatgttagtaaggtgttcctaatgtttggtacactcgaTGTAGTTGAAATAGACAATATAGCAACAGACATAAGAACCATGTGTCATAGCCCAAATGGTTGCCTATCTATGGAAACCTTGTGACTAAAAGTGATGCgtaattatcatcatcatcatcatcgccattatcatcatcattatcatcaccgTTTTCATCCCTTTAAAGTGCAATTactttatttttcatttaaatgAATTAAGCTGTAATGTAGCTACATTTGGACTGCATTGAGTCATGGATGAGATGTCGATACGGTGGCCCTATGGGGCAAAGTAGCTTTTCATGGATTTCTGTTTCTGAAGCATTTACACTGTGTATTTATCACATCAAACTTTGACCCTCAGCTCACATCAACCAACATGCAGACTGTTTCTGCTCTGTTCTGATTTTCATTATAcactaggtacagtacaacaTACAACCAGTGGTTCAAGGTTTTATTACTGAAGAAAGGATAGATGGTAACCTATGTGTCCATAAGTGTTAATATGTCAATTATTGTCAATAAATTGATATGTCA
>TU218731
TAGCAGGGACAGTGCATCGTTAAACTTTCAGCCAAGGATATCACAACGCTGCTAATTTTCTCATGATGCAGTTCTCTCTTTGCTGTGGACCGTGTCACGTTGTCGCAGTTCGTACAAGTGATATATAGGCTTGCGCCGATTCCATTCCTCTACAGAATCTATTTTTCCTAAACTTCAGTCCCGATAGAGACGACTGAGGGGGACTTCTGTTGGTGTTTCGGCACCTACAACACGAAGTGAGGTGGTGGCCAGCTGGAGCTTCCAGGAATGATGGGGCCAACCCACCGCAGCAGGCCCCCTCGCTGCACCTGACCTGGGTCACCTGACCTGAGTCACCTGACCCAGAATGGAGCTCAAGGTTTGGGTGGACGGGGTCCAGAGGGTCGTATGCGGGGTCACCGAGGTAACCACCTGCCAGGAAGTGGTCATCGCTCTGGCCCAGGCCATAGGCCGCACTGGGCGCTATACCCTGGTGGAGCAATGGCGAGACACAGAGCGCCACTTGGCCCCCCACGAGAgcccagtggcctccatcaacaCCTGGGGTCAGTATGCCGGTGATGTCCAGCTGATCCTGCACCGCACAGGCCCCTCCCTGACTGAACGCCCCCCTTCCGAGGGGCCCCCGCTTCGAGGCCCGGAACGCGGTCTCCACCGGCAGAGCCTCCCCCCACTTGCCAAGCTCCACCACCCCAGTGAGCGCTCCCTCCGCCGCCGTGAGCCGCGCCGGAAGTCCCTCACCTTCTCCGGGAGGCCCCGGGGCCTCCGGGACATCCTGAGTGGAGGCCGGGcttgggaggagagggaggccgAGGCCAAACGACGTCTCCTACTCCAGGGGAACGGTGGGAACcagaaccaccaccaccatgtagCAGCCGAAGCGGTAGCCCCAGGGAGGGCAGTGTCCCCCGGCATGTGGGCCTGCCGCATGGATGACTTGGTCAGACTGGTGGG

Function

NR:

description
ras association domain-containing protein 8-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021573943.2 False 1912 mRNA 0.60 6 82366183 82392379
XM_021573934.2 False 3271 mRNA 0.53 6 82366184 82393779
TU218731 True 957 TUCP 0.43 3 82366285 82388521

Neighbor

gene id symbol gene type direction distance location
LOC110497605 LOC106561274 coding upstream 593745 81702783 ~ 81772438 (+)
LOC110497588 LOC106561277 coding upstream 724383 81614772 ~ 81641800 (+)
rhcg1-b rhcg1-b coding upstream 850677 81498587 ~ 81515506 (+)
nedd1 nedd1 coding upstream 1082667 81266020 ~ 81283516 (+)
sh3gl3b LOC106561291 coding upstream 1103005 81251925 ~ 81263178 (+)
LOC110497686 NA coding downstream 24015 82417794 ~ 82426875 (+)
LOC110497700 LOC106561426 coding downstream 213976 82607755 ~ 82644833 (+)
LOC110497717 LOC106561423 coding downstream 345819 82739598 ~ 82755517 (+)
LOC110497777 NA coding downstream 411761 82805540 ~ 82826762 (+)
arntl2 LOC106561420 coding downstream 462138 82855917 ~ 82889873 (+)
G193136 kras non-coding upstream 12848 82339321 ~ 82353335 (+)
G193135 NA non-coding upstream 27341 82338642 ~ 82338842 (+)
G193121 NA non-coding upstream 39938 82326017 ~ 82326245 (+)
G192394 NA non-coding upstream 51707 81785024 ~ 82314476 (+)
G192716 NA non-coding upstream 116560 82248565 ~ 82249623 (+)
G193190 NA non-coding downstream 35579 82429358 ~ 82432564 (+)
G193204 NA non-coding downstream 59415 82453194 ~ 82454078 (+)
G193245 NA non-coding downstream 137338 82531117 ~ 82617477 (+)
G193260 LOC100196824 non-coding downstream 153575 82547354 ~ 82547892 (+)
G193281 NA non-coding downstream 251559 82645338 ~ 82679334 (+)
LOC110497320 paf other upstream 1280003 81083756 ~ 81086188 (+)
LOC110497314 cfap44 other upstream 1295308 81058184 ~ 81080502 (+)
G191057 accs other upstream 1599469 80765332 ~ 80766714 (+)
G191052 NA other upstream 1609536 80755141 ~ 80756647 (+)
LOC110497055 LOC106561315 other upstream 3786121 78578149 ~ 78580190 (+)
G193170 bhlh3 other downstream 7334 82401113 ~ 82403835 (+)
G193339 LOC106561425 other downstream 258854 82652633 ~ 82654430 (+)
LOC110497837 tmem263 other downstream 725548 83119221 ~ 83124965 (+)
G194395 NA other downstream 1165141 83558920 ~ 83559598 (+)

Expression


Co-expression Network