LOC110497686


Basic Information

Item Value
gene id LOC110497686
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 82417794 ~ 82426875 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110497686
CACCCCAACATTCCTTATACCCCTGAGACTGAACTGTAATTGGACTAATTAATCCACGTTTTGATCATTTTAATAGAgaatcagagctacagtaatgCCCTCACATGTCTCCTGATCACATTACTTCTTCTAGTAAATCATGTGACTTTTGCTTCCACCACTTGGCCCAACTGTGCGTGTAACGGTGTTGACAACAGTGATCCAATCGCTCTCATTGGAGAATGACGTGGCTGACTTTTCTGTGCCAATCTTTCTTTAACCCCTAACTGCTAATTGCTTTCTATTTCCGattacagcaaacatgattttgttttattttctatgtAACTGATGTCTGATCACATCAGTGCTTCTGGTCATGTGTTGGAGTCCCCCTtggtctctcccccccctcttaTTTTCCTTCAATGTGCTGCTGCTCTGCTAAGTGGCGCCAGAGCAGCTCCAGGAATCTGCTCTAAATGTTAGTTCAGAGTCTTCTCTGGTTCCAAATAGCCTAGCAGCAGAGCTGGGCTTATGCTGAGAGGAACCCTGAGCAGGAAGAGGAAGGGAACGCGGGGCGCGGCAGGCAGCACACCCAACAGACAGCACGACGGTAAGAGACTGACAAACAAATGAacgggaaagaaaagagagaaaaccACCTCCCGTGAAGCTGAAGAAGTGGTGCTTGTCGCATCTCCCTGACAGAaggtgaagaatgggagaagggaagaagggatccggaggaagagagaagagcagaggagcACCCCCCatcagaggagaagaaagaggtgAAGGCCGAGAATGGAGGCCCAGCGCCCGAGAACTCCCACAAGTGCTGTGGCTATCACTTCCCCCTACTCATCGCCCTGCTGCAGTTGCTGCTGAGGGTGGCCATCACAGCCGTGGCCTTCCCCATGGTCACAATCAGCCCCTCGCTCCTGGCCAGGGAGACCCCACACTTGGCTGGCATCCTTctGCTGTACTTTATCCTGTGCGCCATGGGCCTGGTCCTCTCATCCCTGGTCATGGCCTTCTTTGGCCACCACTACGCCCAGACCAACGGCTTCAGCTGCCTGGAGGTGGGCGTCGACTGCGTGTGCACCCTGAACCCCCACGACCCTATTCCCAGGACCTTCCCCTACACTGAGGTCAGCAACTGCGGATAGGTCACTGGCACCCTGAAACTGTAGTATGTGCCTTGGGGGCCTTCGTCATGTGGAAGCACCACCATCAAGTGTTCTTCGTGGTGCTGCAGATGGGCTCGCCCTCCTTACAGCACTGGTAGAAGGTCTGATAGGAGTTGTAGGAAGAAGAGGCCCATGACGATGTCATGATGAGGAGTTAGCCCATGATGATGCCACTATTGAGGGTAGAGTATTGAGAGATCAGCCAATCAGAATCTTACACAAAACCTTTTGGTGTGTGCATAAGTGTGTGTTTAGGTTGTTCTCAATCATATTAACATGTTGGGGTCGTTGACGTTTTCTATAATGGCTTTTTGAACGACTTTTATATACTGTGTGGATAACTTTGTACTTGTAGTTGCCAATGCTACATGAGATATTTCTAATAGATGAAGAAAAGACACCAAACTACCAAAGGGGTACTTGGATGGACAGCTGGACCGTGCCATCCGCAGAGGGAAATTATGTTTACATGGCTCATTGGCTAATTCAGCAGGAGAGTGTCCCACTCCCTTCATTAATGAAGACAGTATGCAAAATTAGTTCTCTCAAGGTGAGAGATTTGCCTTATGTAAAAAAACAACTTTTGTGATTCATAAATCACACGACACAACCGGAGACAAGagcagaatgagaaagagaaacgTGATGCATTAGCGTTAACTAGTGGTGGGTGGTAATATGGTATTTACTGTACAATGCAGATACTATGGTCAACTCTTTGTACATACTACATGAAGAGAAGGGTTTGAAAACTGAGAAATCTGTTTCATCTTCAATAGATACCTTATTACTGGGGATTTAGGTGGTGAGCTTTTAAGTCATGCACATGTACATTAAGGAAAAAACGACTGCCAATGTCCATTTTTTATGCTTTTTAGCTTATATTCACATTTACTTTCAATAAATGGTGTTGACTTAA
>TU218791
CTGCTCTAAATGTTAGTTCAGAGTCTTCTCTGGTTCCAAATAGCCTAGCAGCAGAGCTGGGCTTATGCTGAGAGGAACCCTGAGCAGGAAGAGGAAGGGAACGCGGGGCGCGGCAGGCAGCACACCCAACAGACAGCACGACGGTAAGAGACTGACAAACAAATGAacgggaaagaaaagagagaaaaccACCTCCCGTGAAGCTGAAGAAGTGGTGCTTGTCGCATCTCCCTGACAGAaggtgaagaatgggagaagggaagaagggatccggaggaagagagaagagcagaggagcACCCCCCatcagaggagaagaaagaggtgAAGGCCGAGAATGGAGGCCCAGCGCCCGAGAACTCCCACAAGTGCTGTGGCTATCACTTCCCCCTACTCATCGCCCTGCTGCAGTTGCTGCTGAGGGTGGCCATCACAGCCGTGGCCTTCCCCATGGTCACAATCAGCCCCTCGCTCCTGGCCAGGGAGACCCCACACTTGGCTGGCATCCTTTTGTTATTCCAGGAGAGCATTTCAGAGGCGCGGGGGCGGTCGAGCAGAAAGCCCAATCCCCCATG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110497686 False 2094 mRNA 0.57 2 82417794 82426875
TU218791 True 575 TUCP 0.57 2 82418246 82422182

Neighbor

gene id symbol gene type direction distance location
LOC110497665 LOC106561427 coding upstream 24015 82366183 ~ 82393779 (+)
LOC110497605 LOC106561274 coding upstream 645356 81702783 ~ 81772438 (+)
LOC110497588 LOC106561277 coding upstream 775994 81614772 ~ 81641800 (+)
rhcg1-b rhcg1-b coding upstream 902288 81498587 ~ 81515506 (+)
nedd1 nedd1 coding upstream 1134278 81266020 ~ 81283516 (+)
LOC110497700 LOC106561426 coding downstream 180880 82607755 ~ 82644833 (+)
LOC110497717 LOC106561423 coding downstream 312723 82739598 ~ 82755517 (+)
LOC110497777 NA coding downstream 378665 82805540 ~ 82826762 (+)
arntl2 LOC106561420 coding downstream 429042 82855917 ~ 82889873 (+)
ppfibp1b LOC106561419 coding downstream 466894 82893769 ~ 82954111 (+)
G193127 NA non-coding upstream 20596 82382694 ~ 82397198 (+)
G193136 kras non-coding upstream 64459 82339321 ~ 82353335 (+)
G193135 NA non-coding upstream 78952 82338642 ~ 82338842 (+)
G193121 NA non-coding upstream 91549 82326017 ~ 82326245 (+)
G192716 NA non-coding upstream 168171 82248565 ~ 82249623 (+)
G193190 NA non-coding downstream 2483 82429358 ~ 82432564 (+)
G193204 NA non-coding downstream 26319 82453194 ~ 82454078 (+)
G193245 NA non-coding downstream 104242 82531117 ~ 82617477 (+)
G193260 LOC100196824 non-coding downstream 120479 82547354 ~ 82547892 (+)
G193281 NA non-coding downstream 218463 82645338 ~ 82679334 (+)
G193170 bhlh3 other upstream 13959 82401113 ~ 82403835 (+)
LOC110497320 paf other upstream 1331614 81083756 ~ 81086188 (+)
LOC110497314 cfap44 other upstream 1346919 81058184 ~ 81080502 (+)
G191057 accs other upstream 1651080 80765332 ~ 80766714 (+)
G193339 LOC106561425 other downstream 225758 82652633 ~ 82654430 (+)
LOC110497837 tmem263 other downstream 692452 83119221 ~ 83124965 (+)
G194395 NA other downstream 1132045 83558920 ~ 83559598 (+)
G195155 NA other downstream 2169535 84596410 ~ 84600324 (+)
LOC110498034 LOC106573178 other downstream 2583589 85010068 ~ 85054392 (+)

Expression


Co-expression Network