XLOC_020867


Basic Information

Item Value
gene id XLOC_020867
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 8140611 ~ 8153399 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042329
TGAAtccgcacctctgttgtcagtgtcacattcCCTAGTTACAGATACCAGTATTCATGGTATTATACAGGTAGATTTACAACGGGTTTAAAGATCAGAAACCAAACTTCACTGTAAGCAAAGAGACACTTGCTTACACAAGGTTACTTGCCCCACATTAAAAGTCCTGATTCTCCTAATCCATtacatgtgagccactttagtTGAGTATGAATTAGGTGAATAAAAGCATTAAGATTACTACATAATGTATGAACTTAAGTCTCTTTCCTTTATACCTATTGCAACTACAATTATGCATATTGAAGTGACTATCACAGTGACTTAGTATTTCTGATTTGTTCATtcactaataatattaatttctcTTCTTCTGTTACAGCTCAAGAAGAACTGTTGAAGATCGCTAAAAAACTAGAGGATGTGTCCGCTGCCTGTGATAAAGATATGCTGACGGTCTCTAAACATTTAACCCAACTGCATGAAGAAATCTCGAAAAAATTGAGTGCAGTCTTGTCCCCAAGAACTACTTCCCAAGCTGATCCAGGACAAGATCTCGATAGAACACAAGTAAAGAGTTCAGTGCCGGAAGCATCAGGACTGTTACATGAAGAAGCCGTGTATGCGAATGAAAGATCAAATCCAGTTTAATGAGAGAAGACACGCCCACCAATGCCGATTACTGTGACATCATCAACATTTAAAGCTGCAGCTACAACAATAATCATCTTTCTGTTATTCAGAGCTTCTAGAATGCTtccagtgaaagaaaaaaaaaaacctgtgtttgttcagcctttaaatttgtgtgtaaaaagattttaaatgaagATGGAAACTTTTACATCAGTTTATGAATGTTACTCATCATATCTGTTACTCTGTTGGCAGTTTGACTCTCATAGCTTTAATTTTGTATGAATGTAGACAGCGAGCAGCTTCTATCATACATTTTATCACAGCAGCGTTTCTCTAATCGTTTTGTGTGAGGTactattgttttttataattaacaCCAATATCAGGATAATGGACCTGTTTTGCGGTCTCAGGTATGAAACTCACATTTCAGAAACATCTTTGACTATCAGGGTCACACTTGAATTCAGTCTATCTGGCACTTTTATTATACAAGTCAATCagctaaacatttatttacagcAATTTGCTtgtattttaagtttgtgcttttagtATACTttcattatttactattattggGTCTATTATTTTACTctcattttattatacttttaatatGTTGTATGTGAATCTGCTTCTTCATCTAAATCTGATCTGCATGTCAAATTTAGTATATAAAGGGCTTTGTATTTATGCTGAAGCACTTAAATTAACCTTTAACAAAAAAGCTGTTGTTTAACTCGAGCACTTACTGAAGTGAAGTCACACTGTTGTGAATTTGCTTTATTGATGAATCTGTTGGTCATTTTGACGACTGCATGTTCATAATGAATACATGTCAAATACTTACTAACTGAAAGTTTCTGTCCTCAAGTTTAGTGGACAAATATTACTAACAATGCTTGAAAGTGTATTTGATTGTTATGCttccttaaaaataataaaggagAATTGTGTG

Function

GO:

id name namespace
GO:0070646 protein modification by small protein removal biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0048017 inositol lipid-mediated signaling biological_process
GO:0005899 insulin receptor complex cellular_component
GO:0032183 SUMO binding molecular_function

KEGG:

id description
ko00904 Diterpenoid biosynthesis
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042329 True 1600 lncRNA 0.34 7 8140611 8153399

Neighbor

gene id symbol gene type direction distance location
XLOC_020866 NA coding downstream 14556 8124928 ~ 8126055 (-)
XLOC_020865 CABZ01034698.2 coding downstream 66399 7971101 ~ 8074212 (-)
XLOC_020864 sc:d217 coding downstream 134269 7896072 ~ 8006342 (-)
XLOC_020863 si:ch73-44m9.3 coding downstream 330630 7758462 ~ 7809981 (-)
XLOC_020862 si:ch211-59h6.1 coding downstream 437653 7675388 ~ 7702958 (-)
XLOC_020868 si:ch73-44m9.3 coding upstream 3975 8157374 ~ 8174244 (-)
XLOC_020869 CABZ01077220.3 coding upstream 86052 8239451 ~ 8250080 (-)
XLOC_020870 NA coding upstream 131535 8284934 ~ 8292299 (-)
XLOC_020871 CABZ01077218.1 coding upstream 141698 8295097 ~ 8306743 (-)
XLOC_020872 CABZ01061495.1 coding upstream 184300 8337699 ~ 8353386 (-)
XLOC_020860 NA non-coding downstream 488759 7649019 ~ 7651852 (-)
XLOC_020857 NA non-coding downstream 518208 7612004 ~ 7622403 (-)
XLOC_020858 BX511034.3 non-coding downstream 522620 7614672 ~ 7617991 (-)
XLOC_020852 BX511034.4 non-coding downstream 698149 7439255 ~ 7442462 (-)
XLOC_020873 CABZ01061495.2 non-coding upstream 192676 8346075 ~ 8346200 (-)
XLOC_020875 NA non-coding upstream 251762 8405161 ~ 8409081 (-)
XLOC_020876 NA non-coding upstream 274536 8427935 ~ 8494949 (-)
XLOC_020877 NA non-coding upstream 286420 8439819 ~ 8444311 (-)

Expression


Co-expression Network