XLOC_020876


Basic Information

Item Value
gene id XLOC_020876
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 8427935 ~ 8494949 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042334
attttgtgttcaactaaagAGATGAAactggtttgtgacaagtgaaagcagagtaaacgatgacagaattgtcatttttgattgaactatccctttaactactGGTTAGAATGATCATTAAATAGGTTTGCTATAATGTGAAGTGTGATTTAATAAACTGTGCATGTTTTCttcttaaatatttgtatttcagTTATGAAGTTTTCACATATCAGTGAATTAATCAAAAGTAGTTGATGCTCCAGCAGTGACTTTCTGTCTGTTCACCACAcaacactgggtcaaatatggacaacccTGACACTTccttatttttcattaaaattaaatgacgCTTTTTAACCCAGTGCTTGAGTTTGcttatatttgacccaatgttgtgTTGTGACATTCAGCATTTTAGAGTGAGTTAAATGTTAATCAAATATTAATTTCTGAAACATTCAGATATAGAGTCAGAGTTTGATGTACACAACATGGAAGCTCTTAGCAATGTTGCTGAAGCTAAATATGCATGAATATAGTTTTGCTGCATGCAGGTCAGCATAAGATAAGCGTGGAATATATTTTGACTCGTGTGCACGCATTTATTTTTGAGACTGTGCTCAGCTCTCCTTTTGACTCATTTTACCCTCGGTACTTTTATGACCCAGCAACGAAACGACCCAGAAACGGCCACATCTATTAAGATATGACAGCTTTAAACAGGTTTCTTTCCATCtaatgctttattttcttttacttttaaaggCCAGATACTGTGTTTAGAATTGATTTTCTTGAtgtaaataaagtgtgtgtgctgACTTAATGTTTCC

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0048738 cardiac muscle tissue development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0007507 heart development biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0006412 translation biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0045214 sarcomere organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0008283 cell population proliferation biological_process
GO:0006518 peptide metabolic process biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0061351 neural precursor cell proliferation biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0005853 eukaryotic translation elongation factor 1 complex cellular_component
GO:0005882 intermediate filament cellular_component
GO:0005901 caveola cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0044853 plasma membrane raft cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042334 True 818 lncRNA 0.34 2 8427935 8494949

Neighbor

gene id symbol gene type direction distance location
XLOC_020875 NA coding downstream 18854 8405161 ~ 8409081 (-)
XLOC_020874 CABZ01061498.1 coding downstream 39257 8380715 ~ 8388678 (-)
XLOC_020872 CABZ01061495.1 coding downstream 74549 8337699 ~ 8353386 (-)
XLOC_020873 CABZ01061495.2 coding downstream 81735 8346075 ~ 8346200 (-)
XLOC_020871 CABZ01077218.1 coding downstream 121192 8295097 ~ 8306743 (-)
XLOC_020879 si:ch73-27e22.4 coding upstream 2090 8497039 ~ 8501332 (-)
XLOC_020880 si:ch73-27e22.3 coding upstream 11219 8506168 ~ 8509215 (-)
XLOC_020881 CR974475.1 coding upstream 22708 8517657 ~ 8546430 (-)
XLOC_020882 zmp:0000001175 coding upstream 27628 8522577 ~ 8648144 (-)
XLOC_020883 si:ch73-27e22.2 coding upstream 36251 8531200 ~ 8536482 (-)
XLOC_020870 NA non-coding downstream 135636 8284934 ~ 8292299 (-)
XLOC_020867 NA non-coding downstream 274536 8140611 ~ 8153399 (-)
XLOC_020866 NA non-coding downstream 301880 8124928 ~ 8126055 (-)
XLOC_020886 CR450686.3 non-coding upstream 295694 8790643 ~ 8797226 (-)
XLOC_020893 FO393424.4 non-coding upstream 444984 8939933 ~ 8951684 (-)
XLOC_020896 NA non-coding upstream 781407 9276356 ~ 9305802 (-)
XLOC_020897 NA non-coding upstream 783829 9278778 ~ 9315172 (-)

Expression


Co-expression Network