XLOC_020948



Basic Information


Item Value
gene id XLOC_020948
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 11082942 ~ 11097837 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00042348
AGAGGTGTGCAGTCTGATACCATCACTGATGTTCAAAGCAAAACCTGGTTTAATACAGTAATATTCGCCCAAATCATCAGCACtgacattattgattattaagtGGCTTCTGCTTCCCTCTGAATATTTGCTGCGCAGTTTTCCATCATAATAATCAGCCTCTTGGGTTCCAAAAGTCCTCATGATCATCATCGGACGAGCTGACGGTTTTATCACAAACCAAACTACAGCTTTTAATCTAAACTCACAGGCTAAAGTCACAGTCTCTCCTAAAGTCACCTGTTGATCAGTCAAAGCTACAGTCACAGTCTCTCCTAAAGTCACCTGTTGATCAGTCAAAGCTTCAGTGTGTTGATTCCACACCAGAAAAC

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00042348 True 371 lncRNA 0.41 2 11082942 11097837

Neighbor


gene id symbol gene type direction distance location
XLOC_020947 use1 coding downstream 3874 11070842 ~ 11079068 (-)
XLOC_020946 insrb coding downstream 28698 10927370 ~ 11054244 (-)
XLOC_020945 NA coding downstream 155984 10922765 ~ 10926958 (-)
XLOC_020944 BX908744.2 coding downstream 165149 10903510 ~ 10917793 (-)
XLOC_020943 BX908744.1 coding downstream 181966 10895963 ~ 10900976 (-)
XLOC_020951 NA coding upstream 5068 11102905 ~ 11104271 (-)
XLOC_020952 atp6ap2 coding upstream 25650 11123487 ~ 11137268 (-)
XLOC_020953 mid1ip1b coding upstream 338610 11436447 ~ 11438627 (-)
XLOC_020954 tspan7b coding upstream 342868 11440705 ~ 11493236 (-)
XLOC_020955 slc26a11 coding upstream 399529 11497366 ~ 11520405 (-)
XLOC_020940 BX908398.1 non-coding downstream 318895 10763933 ~ 10764047 (-)
XLOC_020938 NA non-coding downstream 371411 10706775 ~ 10711531 (-)
XLOC_020961 NA non-coding upstream 574352 11672189 ~ 11674421 (-)
XLOC_020962 NA non-coding upstream 599435 11697272 ~ 11698675 (-)
XLOC_020969 CR847870.5 non-coding upstream 1487002 12584839 ~ 12584954 (-)
XLOC_020972 CR847870.3 non-coding upstream 1601284 12699121 ~ 12726556 (-)

Expression



Co-expression Network