XLOC_020949


Basic Information

Item Value
gene id XLOC_020949
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 11087404 ~ 11089700 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042349
ttgtatgcgagatcttgtcctttcggtcatgacccaaagctcattgCATTTTATCATATATTTGCTATTTAATTCCTTCGatacatttgtttactctgaacattttaaaatgtatatagtaGTCCATGTTGTAAATGATGTATCTGTGCACTTGATTATTTAGTTAAAAATTCATTTGCCtacataatctttaatcaaatacctCGGGGAAGAGGACAAAGTGCATGAGGGGCCCGCATGACACCCAATCCAACCACAAcagctatcagtccattagggtggGACCATCGGTCATTTTGGTTTATATTTTGGACGGGGCCATCAGACCTTTAGGTGGGACCAGCAATCTGTTATGAAAGTGACatcagtcctttaaggcaggACAATCAGACCTATAGGTTGGGACCATCAGACCATTAAATGACCATCAGTCATTTAAGATGTGGCCATCAGACCATTTGGGCGAGACCAGCAATCCATTAGGGTGGTGACATCAGTCTTTTGGGGCAGGTCCAGGGGCGTCGCTAGTGGGGAGCAAAGGGGACAGAGTGCATGGGGCCCTGAAAATTTAGGGGCCTTGCAATGGCAAGCAGAAGAGCCCGTATGACACCACATCCAACCACAACTGAACTGCTATAACTCTATTAGGGCAGGaccatcagtcatttagggccgGGCCATCAGACCTTTAGGGCGGGACCATTAGTCACATAGGACGGGCCATCAGACCTTTAGGGTGGGAACATCAGTTAattaaggtggggctatcagtccattagggcagtaccatctgtcatttagggtggggcaatcagacctttagggcggggctatcagtttaTTAGGGCGGGACCATCAGACTTTTAGGATGGGGCTGTTAGTCTAAGTACAGTATGCCAGTcaccagtctgacgcattcgcatttgtatgaatggaagtctatggggataaaagtgcagtgtgaccgcagtttTAGGGTGAGACAATCAggcctttagggtggggttatcagtccattagggtggGACCAACAGACCATTAGGGCAGGGACATCAgagctttagggcggagctatcagtttaTTATGGCAGGACCATTTGACCATTAGAGTGAGAAcaacagtcatttagggcggggccatcagacttttagggtggggctattagttaATTAGGGTGAGGCCATCAGACCCTTAGGGCAGGACTATCTGTCTATTAGGGCTGGACCATCAGACCATTAGGGCGGGACCAACAGACCATTAGGGTGGTGACTTCAGTTCTTTAGGCCAAGatcatcagtcatttagggcagggccatcagacatttagggcgggaccatcagtcatttagggcagagttATCAGCGCATGTGTGTTTATTCAGCTCCGCCCAGCCCTTTAATGCAATCAATGATGTAAATACGAGTAAACAAGATGGTGGGAAGTTAGCAAGGTCATAAATAATTGGACTGGAGTGCAGCCTATGTCTGTAAAATTTATTTTCCCGTTCTTGTCATCATCGGGCATCTGAAAACATTCCGTCTTTGTGGACAGTATATTCCTCCTCCACAACTGAGTGCAAACTGACATTCAAATCTTCCTCCATTTTGTTAGCAATGGCCATCTTACAACATCACAATCAGTTCCCAAACAACAAAATCCTACACTgtcctatattttttttcattgctaTCGGTTGTCATGATAAAGTATAACTTAACTTCCATTTCACACTGATTTAAAAGTAACCAGCTTTAGGTCAGAATCATGATAATACTGTATGTTGTGGTCATATAATCTCTTCCAGTGGTCACTAGACTGTCAATGGTAAAAACACCATTCTTTGTCACAGTTAAAATTCATAGGTCAAAGCTTCAGCAACAAAAAAATCGAATACCATCAGAAGCCTATTTGAAGCAAACATCAGGCGATCTGTCCGCATGTAGGCGTTTCATATATATTATTTGGTAGTATTTGAAGATAGTTGCGTTCTGCCATTGGGTTTCGAGGAGGATCGCAGTTGCTGTTGATCTGAATGGACAAGTTTCTTCTGAGATGCTCAGGAACCATATAAGGTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042349 True 2077 lncRNA 0.44 2 11087404 11089700

Neighbor

gene id symbol gene type direction distance location
XLOC_020947 use1 coding downstream 8336 11070842 ~ 11079068 (-)
XLOC_020946 insrb coding downstream 33160 10927370 ~ 11054244 (-)
XLOC_020945 NA coding downstream 160446 10922765 ~ 10926958 (-)
XLOC_020944 BX908744.2 coding downstream 169611 10903510 ~ 10917793 (-)
XLOC_020943 BX908744.1 coding downstream 186428 10895963 ~ 10900976 (-)
XLOC_020950 BX649485.2 coding upstream 638 11090338 ~ 11091099 (-)
XLOC_020951 NA coding upstream 13205 11102905 ~ 11104271 (-)
XLOC_020952 atp6ap2 coding upstream 33787 11123487 ~ 11137268 (-)
XLOC_020953 mid1ip1b coding upstream 346747 11436447 ~ 11438627 (-)
XLOC_020954 tspan7b coding upstream 351005 11440705 ~ 11493236 (-)
XLOC_020940 BX908398.1 non-coding downstream 323357 10763933 ~ 10764047 (-)
XLOC_020938 NA non-coding downstream 375873 10706775 ~ 10711531 (-)
XLOC_020961 NA non-coding upstream 582489 11672189 ~ 11674421 (-)
XLOC_020962 NA non-coding upstream 607572 11697272 ~ 11698675 (-)
XLOC_020969 CR847870.5 non-coding upstream 1495139 12584839 ~ 12584954 (-)

Expression


Co-expression Network