XLOC_020954 (tspan7b)


Basic Information

Item Value
gene id XLOC_020954
gene name tspan7b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 11440705 ~ 11493236 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00041215
AGAGTGACTGGAGCAGAGGCGCAGCGGAGAATCACAGCAGCACAAACCCACTGCGCTCATGGCATCAAGGAGAATGGAGACCAAACCAGTCATAACCTGCCTCAAAACGCTCCTCATCGTCTATTCCTTCGTGTTCTGGATCACGGGGGCAATCCTGCTGGCGGTGGGATTATGGGGGAAGTTCATCTTGGGTCCGTACATCTCTCTGATTGCTGAAAACTCCACCAATGCTCCCTATGTGCTCATCGGGACCGGGACGACCATCATCGTGTTCGGGCTGTTCGGCTGCTTCGCAACATGTCGCGGGAGTCCATGGATGCTCAAACTGTACGCCATGTTCCTGTCTCTGGTTTTCCTGGCAGAGCTGGTCGCTGGCATCTCGGGCTTTGTTTTCCGTCATGAGatCAAAGGCACCTTTCTGAGGACGTACAACGAGGCCGTTCAGAACTACAATGCGCAGGATGAGAGAAGCATCGCAGTGGATAACGTCCAGAGGAGTTTGCGTTGTTGTGGTGTCCTGAACTACACCAGCTGGTTCTCCAGTGTTTATTTCCCTGTGAATGGAATCCCTCCGAGCTGCTGCGCGAACATCTCCGACTGCAACGCTTCAGACCTGCGAAACGCTACCATAGCACCTACCAAAGTCTATCAGcagGGCTGCTATGAGCTGGTGACAACCTTTATTGAGACTAACATGGGCATTATTGCTGGAGTAACATTTGGAATTGCATTCTCACAGctGATCGGGATGCTGTTGGCCTGCTGTCTGTCACGATTCATCACTGCCAATCAGTACGAGATGGTGTAGCGGAGGGAGGAAAGGCACTAAAGATGTACGTCACCTGGAAAGGGAAAGCAACCCAAAAATGCTTGCACACTCCATTCTTTCACATCTCttttttactctctctctccttttatCTTTAATTTCTTTCTTGCCTTTTTTCTGCTTTCTGTCATTCCTTAATCATGCAGTTGTGCCATGACCAAAGCCTCTCCTTTCAAAACGTCAGCGTTAGCGAGGACAAGGAAACGGTTTTAAGACGCACTCCTGCGTTCCTGCATTTTACTCTGTATAAAACCTTGCATGCGGAAAccatcgcacacacacactataactaAAGCATTTTTGTAACACCACGTCCTAACCGCTCGCAGGAAATCGATATCGCAATCCATCTCTCGCTGTACTGTATATCAAATATGTTATCGGTGGTTTTGTTGCCTTTGCATAGGATTTTCTATTTCAGACACAAAAATCACTCAGTACTTTATTAGGACATAAGCGTGACGTGTGACTTGTTCGCTGTTTatataatatactttttttgGAGAAAAGTCTGTTTTTCTTTACTATCCACCATTTTGTGAGCTTAGTTACTATTGGTCAGGTTGCAATTAGTAGCTCCGCCCACAGTGAAATCTCATTGGTCCAGATAGCTGTATATTGTTACAAACTGGATGTTCTAATTGGCTATTTTGTGCTAAGTTTTGCAGTACTTTTACTTATTTACATTCAAAACTTTGCACATCTTGTTAGGACATGGTGTTACTTAACCCCTAAACAAGTGACTTTGTTAGTTACTTGATTTTTGGAgagaaaaaactattaaaaatacaaacaaatggcAAGATgttttcgttgttgttgttgctgctgttgtaAAATCTATGGCAAAGGGGTTCATCTCAGAAACggctttaaaatataatttcatttaatttttttcgcTTCGGGTTGAAAGTGACTTGACGTGTTCATGTGCCGAGTCAAAAACATCAATGTAGTTTCACTGGAAAGCCAAAAAACAAGCAATTTTCTGCCACAAACTGTATAGGCTTGTACAGACCTCAAGTAGATGCCGACTGGAGTGTAAATGTGAAAAACATTaggcttttatgttgttgttgttgttgttgttgtaagacAAGCAGATATTTCAGAGTACTAACTAAACACTGTTTAACAGACAACTTTATGGCTAATTCAACAGTTAATAGGTGGTAGTTACAGTTTTACACTATATCTACCTTGTGACACTGTTATTTCGTGGTGTTTTAATGTAAGAATGTAATCAAACTGAACGTCTCTTTCAGAATTGAGGATGATCATGTTTAACAGCTCCAAGAATGTCCAGATAATTTCAAGAGGAATGAATATTTGCATGAGGAAAACATGAAAATGATGAGAATTTTGGTATGATGAAGGATGTTTCTAAGGATTCTATGTTGTTTTTAAGAAAATATGAGATGTTAGACTTGCTAAATCCTTGCTAGTTTGTctagtttaaaacattttgattcaaaatctaatatataaagtgaaataaataaatttttctaGAGGTTTGAGTCAAATAATTTCTTGAAACATCTTTACCTCAGTTTGTTTTTgcttaataaaatgttttgttgattTAGAAGTATTAAAGACTGAGCCAAACTTTAGACACCTCcgctgtttatttattatttattaaaacataactTATGTGGTCAAAATTGCTGCAGTCTTTGGCTTTCGTTTTGTTTCGAGTCTACCATGCAGTACTGTTATTTTCATGTGTCACTGTTTTCTCTTTTTAATCTAATTTCATGTTGTTTTGTATGGTTTTCTCATTGGCCATTTTGTTATCATTCAGCCTTAGCTAGTTAATATGTTAAACGATCATTTCTGAAGCTGCCCCTTGTGTTGATTGATCATCAATTAAGTATTAGAATCCAGAATTCATAGTGATGAACTACACATCTCCAGAGAAATAATGTAGGCTactttgtataataaaaataaacactttttaaaatgcatCACCAGCTAGCATGCCAACAAAATGTACGTTGATATTGTAAACATCCGTGATCTCTATGAATAAAATGGTTCTTCGTCGTTA

Function

symbol description
tspan7b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in basal plate midbrain region; nervous system; notochord; and pancreatic bud. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 58. Orthologous to human TSPAN7 (tetraspanin 7).

GO:

id name namespace
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040927-5 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in basal plate midbrain region; nervous system; notochord; and pancreatic bud. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 58. Orthologous to human TSPAN7 (tetraspanin 7).

Ensembl:

ensembl_id ENSDARG00000008407

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00041215 True 2891 mRNA 0.40 8 11440705 11493236

Neighbor

gene id symbol gene type direction distance location
XLOC_020953 mid1ip1b coding downstream 2078 11436447 ~ 11438627 (-)
XLOC_020952 atp6ap2 coding downstream 303437 11123487 ~ 11137268 (-)
XLOC_020951 NA coding downstream 336434 11102905 ~ 11104271 (-)
XLOC_020948 NA coding downstream 342868 11082942 ~ 11097837 (-)
XLOC_020955 slc26a11 coding upstream 4130 11497366 ~ 11520405 (-)
XLOC_020956 gnav1 coding upstream 45156 11538392 ~ 11594414 (-)
XLOC_020957 pcyt2 coding upstream 103196 11596432 ~ 11614973 (-)
XLOC_020958 gcga coding upstream 124284 11617520 ~ 11626018 (-)
XLOC_020959 dpp4 coding upstream 135202 11628438 ~ 11648322 (-)
XLOC_020950 BX649485.2 non-coding downstream 349606 11090338 ~ 11091099 (-)
XLOC_020949 NA non-coding downstream 351005 11087404 ~ 11089700 (-)
XLOC_020945 NA non-coding downstream 513747 10922765 ~ 10926958 (-)
XLOC_020961 NA non-coding upstream 178953 11672189 ~ 11674421 (-)
XLOC_020962 NA non-coding upstream 204036 11697272 ~ 11698675 (-)
XLOC_020969 CR847870.5 non-coding upstream 1091603 12584839 ~ 12584954 (-)
XLOC_020972 CR847870.3 non-coding upstream 1205885 12699121 ~ 12726556 (-)
XLOC_020975 NA non-coding upstream 1284653 12777889 ~ 12786441 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G163177 NA non-coding CI01000030 null 7223991 ~ 7306353 (-)
bowfin (Amia calva) AMCG00014289 tspan7,tspan7b,LOC107704418,LOC107745974,LOC107593043,LOC107586946 coding CM030128.1 CM030128.1 7845556 ~ 7855351 (+)