G119856 (LOC106606119)


Basic Information

Item Value
gene id G119856
gene name LOC106606119
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 19492925 ~ 19494124 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU138294
CGGGCAGGTCGGCGGggccacagctctctctctcggggtTGATGTCATCCACCCACAGGGTGCGGGTACACCCCTTCCACAGGCCGTAGTGGGCTGTCTGACACGTCTGGTTGTTACTCCAGGTCTTGGGCGTGGCCAGCTCCACCCAGAACTCTGTTCCCACCCCCAGCACTGTCAGGGTCACGCCCACAATGGCCACAAAGAACGCCAGCTTGATCTTCCCCTCCTGGTTGTCACTCATCCTAGGGGTCCGCCTTGTAGCACGCCCAACTCCCTTCACCCCTGCCAGGCCCCCATGGGGTCCTGCTCCTACCACCCCCATACGGCCATCCTCCTCCGGCTGGACAATGTAGTTGGCCCACATGGTGACCTCTACCAGAGGCCGACAGAGGCcggatggagagaggaaagggagggaaagagggaagaggATGGGAAAGAGGGTGAAAAGAGAGAAGCAGGGAAATAATTGAAGGGGGTGAACCCCAAAAAGAAGAAAGGAAGGTTGAAGACAGAAGGAAGGTAGAGACACAGATAACAGCAGTTCAGAGGTGGATGTGGGGATGGAGAAcgggaggaggaaaggggagagagagatggatggttcAGTATGGGAGTAGACAAGATGGGAGAAAGGGAGTGATGAGAGAGATGGATGGTTCAGTATGGGAGTAGACAAgatgagagaaagggagtgatGAGAGAGATGGATGGTTCAGTATGGGAGTAGACAAGATAGGAgaaagggagtgatggagagaaagagatggatggtTCAGTATGGGAGTAGACAATATGGGAgaaagggagtgatggagagagagatggatggttcAGTATGGGAGTAGACAAGATGGGAgaaagggagtgatggggagagagagatggatggttcAGTATGGGAGTAGACAAGATGGGAGAAAGGGAGTGATGAGagaaaggtggaggaggagaggactgggtGATGAGGAAGGATGGCGTCTGATTATACTGGAACACCTGAATAAAAACaaggaaagaagaaaaa
>TU138296
CGGGCAGGTCGGCGGggccacagctctctctctcggggtTGATGTCATCCACCCACAGGGTGCGGGTACACCCCTTCCACAGGCCGTAGTGGGCTGTCTGACACGTCTGGTTGTTACTCCAGGTCTTGGGCGTGGCCAGCTCCACCCAGAACTCTGTTCCCACCCCCAGCACTGTCAGGGTCACGCCCACAATGGCCACAAAGAACGCCAGCTTGATCTTCCCCTCCTGGTTGTCACTCATCCTAGGGGTCCGCCTTGTAGCACGCCCAACTCCCTTCACCCCTGCCAGGCCCCCATGGGGTCCTGCTCCTACCACCCCCATACGGCCATCCTCCTCCGGCTGGACAATGTAGTTGGCCCACATGGTGACCTCTACCAGAGGCCGACAGAGGCcggatggagagaggaaagggagggaaagagggaagaggATGGGAAAGAGGGTGAAAAGAGAGAAGCAGGGAAATAATTGAAGGGGGTGAACCCCAAAAAGAAGAAAGGAAGGTTGAAGACAGAAGGAAGGTAGAGACACAGATAACAGCAGTTCAGAGGTGGATGTGGGGATGGAGAAcgggaggaggaaaggggagagagagatggatggttcAGTATGGGAGTAGACAAGATGGGAGAAAGGGAGTGATGAGAGAGATGGATGGTTCAGTATGGGAGTAGACAAgatgagagaaagggagtgatGAGAGAGATGGATGGTTCAGTATGGGAGTAGACAAGATAGGAgaaagggagtgatggagagaaagagatggatggttcAGTATGGGAGTAGACAAGATGGGAGAAAGGGAGTGATGAGagaaaggtggaggaggagaggactgggtGATGAGGAAGGATGGCGTCTGATTATACTGGAACACCTGAATAAAAACaaggaaagaagaaaaa

Function

NR:

description
voltage-dependent calcium channel gamma-6 subunit-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU138294 False 1027 lncRNA 0.40 2 19492925 19494124
TU138296 True 909 lncRNA 0.45 2 19492925 19494124

Neighbor

gene id symbol gene type direction distance location
LOC110537022 LOC106576929 coding upstream 11542 19444131 ~ 19481383 (+)
LOC110534362 LOC106575226 coding upstream 59294 19392737 ~ 19433631 (+)
LOC110512786 LOC105019084 coding upstream 145625 19307576 ~ 19347300 (+)
LOC110503718 LOC102193556 coding upstream 233851 19131905 ~ 19259074 (+)
LOC110520830 LOC106605779 coding upstream 492715 18994838 ~ 19000210 (+)
LOC110537095 LOC106576906 coding downstream 32039 19526163 ~ 19528660 (+)
LOC110537107 LOC106605819 coding downstream 71755 19565879 ~ 19579511 (+)
LOC110537165 LOC106605824 coding downstream 103389 19597513 ~ 19599416 (+)
LOC110537142 LOC106576877 coding downstream 143310 19637434 ~ 19645326 (+)
LOC110537226 LOC106575133 coding downstream 182532 19676656 ~ 19683059 (+)
G119855 NA non-coding upstream 286 19492421 ~ 19492639 (+)
G119844 NA non-coding upstream 29009 19463328 ~ 19463916 (+)
G119814 NA non-coding upstream 83063 19407962 ~ 19409862 (+)
G119808 NA non-coding upstream 88607 19399449 ~ 19404318 (+)
G119792 NA non-coding upstream 102173 19390447 ~ 19390752 (+)
G119795 NA non-coding downstream 10742 19504866 ~ 19506500 (+)
G119866 NA non-coding downstream 24817 19518941 ~ 19519677 (+)
G119883 NA non-coding downstream 58591 19552715 ~ 19562850 (+)
G119909 NA non-coding downstream 86697 19580821 ~ 19582374 (+)
G119916 LOC106605822 non-coding downstream 97418 19591542 ~ 19595167 (+)
G119245 stl2 other upstream 531460 18934673 ~ 18992769 (+)
G119160 NA other upstream 820605 18670513 ~ 18672320 (+)
G119153 LOC106605761 other upstream 856884 18633839 ~ 18636041 (+)
LOC110536658 LOC106577300 other upstream 1015791 18457284 ~ 18481741 (+)
G119794 u2af2 other downstream 12527 19506651 ~ 19507338 (+)
G119952 nat14 other downstream 207975 19702099 ~ 19703788 (+)
LOC110537243 LOC106576860 other downstream 274146 19768270 ~ 19778335 (+)

Expression


Co-expression Network