G125598


Basic Information

Item Value
gene id G125598
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 25289718 ~ 25291323 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU145070
TTTATATAAGGAGGTTTTATTGGTAATTATTTGCATGATATGTCTTTTGGCATTGATAGTAAGTGTAATAtatataacataacaatatatAGTTCACTATCTCAAAGTTAAAAACCCCCCAAATTATTTCAAGACTTTTCAAACCAAGCAAAAGTATTTTTCAAAAGTCATTATATTCTATCAACAGAGAAGTTACATCTGCTTCGATTGATTGGACAATCCAAAAATCAGAACAAAGACGCAGCTGAATTTGTCTCATAAGTTTGGTTCTAAAATATAGTTGTCAGCTCTCCcaagaaaataaacacagttacAACATAGTAATGAATGAAACAATTTGAGACACCTTTACACATTTACCTCTATGTATTATGGTTCTGTTCTTCTGTTCCTTGTATGACTGTCTACGTCAGTTTGATCAGCTTCTATAGATGAATCTTCCAcaaagaaagaggaggaagaaggaggaaaggaggaggcaACTAAGGTttgtggaggtggggggcagTACCTGTAGCCCCACAGCACTATTTTATTTTTCTCAATACCCGTTCAAAAGTTGGTGGATTTGGGGAGTTTTAGATAGTAGACCAATGCCTGGAAATATAATTGACATAATATGACTGGGGAATGATATGATATACTGCAACAAAATAGGTATTCATTGTATTACACAATGTTGATGAGGTAACATCACAGCCCCGTCTTTCATGAGTATTTCTATTGACTGACTGATCATTGTACAGGAGGGTCCCATTAGGCCCAACAGTTTCTTATAGCCCATGACCCAGACTTTCCCTAGTTCCTTAACCCTGTatcctcattccctccctctatATTACCAGACAGGCATGGAACCCTTTAAGgcacatgtgtcaaactcattccacagaaggCAAAGTGGCTGAGGGTTTTTGTCTCATCCCTTGTCCTTGATTGATAAGgccactaattagtaaggaactcccttcacctggttgtcaaggtcttaattgaaaggaaaaaccaaaaacccgcacacactaggccctccatggaatgtgCTTGACATCCCTGCTTTAAGGCTAACCCCCAGTCACACAATCCCAACCATCACATCATCAGTGTAAACATACCGAACATTGGCGTCTAAAGACGCTCATGGCCATTGTCATTTGTATATGCTCATTTCAGTCACTGTCATCATGTCACTCATGATGACGTCATCATGTTGACGTATCACTTGACGGACATGCCTCCCATGGCCTCAGTGACTTCACTGTTGACCTGGGCAGCGATGCAGGCAGGGGTCACGTTGAGGTGGAGGTCATACTGCTGGTCCAGACCCAGGTAACTGTCACTCATCAA

Function

NR:

description
PREDICTED: activating signal cointegrator 1 complex subunit 3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU145070 True 1347 lncRNA 0.41 2 25289718 25291323

Neighbor

gene id symbol gene type direction distance location
LOC110538828 grik2 coding downstream 179135 24862906 ~ 25110583 (-)
LOC110538978 LOC106605653 coding downstream 688333 24584393 ~ 24601385 (-)
LOC110538887 LOC106605647 coding downstream 748820 24531424 ~ 24540898 (-)
LOC100301652 LOC100301652 coding downstream 785125 24503806 ~ 24504593 (-)
LOC110538859 LOC106578507 coding downstream 797236 24480265 ~ 24492482 (-)
LOC110533704 cep162 coding upstream 126117 25417440 ~ 25427699 (-)
LOC110539072 cep162 coding upstream 137660 25428983 ~ 25443516 (-)
si:ch211-198c19.1 LOC106605502 coding upstream 168231 25459554 ~ 25460882 (-)
LOC110539098 LOC106605503 coding upstream 377703 25669026 ~ 25790259 (-)
LOC110539162 LOC106605511 coding upstream 1259509 26550832 ~ 26559134 (-)
G125388 NA non-coding downstream 333689 24954905 ~ 24956029 (-)
G125352 NA non-coding downstream 410370 24874869 ~ 24879348 (-)
G125347 NA non-coding downstream 433651 24855642 ~ 24856067 (-)
G125325 NA non-coding downstream 455178 24813644 ~ 24834540 (-)
G125273 NA non-coding downstream 582009 24707474 ~ 24707709 (-)
G125643 NA non-coding upstream 63634 25354957 ~ 25355276 (-)
G125644 NA non-coding upstream 65043 25356366 ~ 25356581 (-)
G125672 NA non-coding upstream 127824 25419147 ~ 25419450 (-)
G125693 NA non-coding upstream 150309 25441632 ~ 25441749 (-)
G125305 NA other downstream 513091 24775220 ~ 24776627 (-)
G125043 NA other downstream 964882 24324580 ~ 24324836 (-)
G125003 NA other downstream 1019582 24269226 ~ 24270136 (-)
LOC110538705 LOC106577653 other downstream 1128275 24144519 ~ 24172836 (-)
G127083 NA other upstream 1270291 26561614 ~ 26562127 (-)
LOC110539285 LOC106579350 other upstream 1360053 26641958 ~ 26675649 (-)
LOC110485245 ubr5 other upstream 1979937 27231538 ~ 27278158 (-)
G129250 NA other upstream 2474834 27766157 ~ 27766532 (-)
LOC110485663 LOC106579570 other upstream 2805359 27933389 ~ 28149986 (-)

Expression


Co-expression Network