G130410


Basic Information

Item Value
gene id G130410
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 29785126 ~ 29785365 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU150294
aaacagccctatctggtgcaacaaacacagagacaggaacaatcacccacaaaacccaacaccaaacaggctacctaaatatggttcccaatcagagacaatgactaacacctgcctctgattgagaaccatatcaggccaaacacagaaacagacaaactagacacacaacatagaatgcccactcagatcacaccctgaccaaacaaaacatagaaacatacaaagcaaactatggtc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU150294 True 240 lncRNA 0.43 1 29785126 29785365

Neighbor

gene id symbol gene type direction distance location
LOC110486333 LOC106605448 coding upstream 16499 29765682 ~ 29768627 (+)
LOC110486279 LOC106605442 coding upstream 87440 29685855 ~ 29697686 (+)
LOC110486269 LOC106580132 coding upstream 99976 29679207 ~ 29685150 (+)
LOC118936731 dcst2 coding upstream 123098 29654875 ~ 29662028 (+)
LOC118944146 NA coding upstream 190910 29594164 ~ 29594216 (+)
LOC110486369 LOC106605449 coding downstream 30415 29815780 ~ 29833805 (+)
LOC110486403 LOC106580236 coding downstream 115492 29900857 ~ 29914741 (+)
gnrh-r LOC106605452 coding downstream 140371 29925736 ~ 29930354 (+)
LOC110486448 cr3l4 coding downstream 293283 30078648 ~ 30083392 (+)
LOC110486462 NA coding downstream 311806 30097171 ~ 30103693 (+)
G130335 LOC106580167 non-coding upstream 40259 29726551 ~ 29744867 (+)
G130345 LOC106581475 non-coding upstream 113181 29664010 ~ 29671945 (+)
G130297 LOC106605438 non-coding upstream 203716 29577661 ~ 29581410 (+)
G130282 NA non-coding upstream 230221 29554407 ~ 29554905 (+)
G130291 NA non-coding upstream 238084 29546659 ~ 29547042 (+)
G130411 NA non-coding downstream 339 29785704 ~ 29785943 (+)
G130424 NA non-coding downstream 14170 29799535 ~ 29799827 (+)
G130427 NA non-coding downstream 19809 29805174 ~ 29806131 (+)
G130419 NA non-coding downstream 55094 29840459 ~ 29840782 (+)
G130451 NA non-coding downstream 70611 29855976 ~ 29932819 (+)
G130308 NA other upstream 144030 29600026 ~ 29641096 (+)
G129155 NA other upstream 299996 29484633 ~ 29485130 (+)
LOC110534631 LOC106580029 other upstream 306996 29424822 ~ 29478401 (+)
G128853 LOC106605419 other upstream 803838 28939899 ~ 28981288 (+)
G130414 NA other downstream 4211 29789576 ~ 29789831 (+)
G131491 NA other downstream 914817 30700182 ~ 30700623 (+)
G131517 ccne2 other downstream 962690 30748055 ~ 30749954 (+)
LOC110534710 LOC106605356 other downstream 1506105 31262054 ~ 31294577 (+)
eaf1 LOC106581241 other downstream 1575071 31360408 ~ 31366322 (+)

Expression


Co-expression Network