G133525


Basic Information

Item Value
gene id G133525
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 33256492 ~ 33260732 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU153777
AGTTTATTTTTCTTTGCTATCCATTGCAGTTCTGAAAATGTCAAGTGCACAACAgtgcaaataaataaacatagacAAAAGATAAGAAAAAATCTCACACACAAACTTTATAACAGAATCATGACGTTGTAACATTTAAGTATTCTTCATAACCAGTAgtatttattttgatgtatttacTTATATTCCATTCTCATTTACAAAATACACAAAATCAAAGACAACATATAATAGTATTCTGTCATTTACACTTCAGTTTTTTTGtcctttgtattttatttatggtTCCACATGTATAGAGTATTGTAATTCCTAATACTATGATCTATACTTACATACAAACAACTACAGATTCTACAGCACAGTACAATGACAGTGATAAATTCTCTGTTACATGAATTAATCACAATATATTCTTATTGACAAAAGCCTCCAAAGACCTAGGGGTAGTTTTAGAAGTAAATATTAGCCATTCAGTCCCATTTAGTAGAAGCCAACACACAGCATTTCAGTGGAAAAGGCCCAGCATATAATGTGCTTAATTTCCCAGTAGTGTTTTGGGGAGAGATAAAAGACAAATAATCGAACACTTATTGCTATAATTACGTTTTTGCACTCATGATTGACTGTTGACCAAGCAACAAGTTAAGAATACAAAAAAACCCTGTAACAGAATTGAAAATATGCAACTATAGGTACTAGAAACAATCTTGACTTAAAATATCCTGAACTGGTTCACTGAGAGAGTAAATAGATAGTTGAGCATTTCACAGCGTTCCATCTCGTACTATACAACAATAATATTGACATCCTTGTTTATCATTTCATGGGCGGTATAATTAGGACAACATACAGATAGGATATGGAAACACAGATCAGACACATGCTGCAATGCTGAGGCTGATTCTTCAATAACAAATGGAATCTTTTAAGATTACTCTGCTACTTAGAGGAATTGTTAACAAATGTACTTTCCGACAGACTGGCCATCCACGTCCCAGATCAGTTTATAAAAACTGCTCCCCCTACTACAGGAATATGTTCAAGGAGTCAAAGGTTATAAAGACCTATAATATGTATTAATGATCTATGTTATATTTCATGTATTTTAATTTACATATTTAAATCTATATTCCAGTTTTTTTAATGACATAGTATAAACTTAAGACATACAAAAATATTTGGCAATAATAAATGAGAAGTTACTCATGGCACACTTATAGATCGGCAGTCACTAAACCATCAGTGAAAGGTTTGGGTGTGTAGACTAATGCATGTCAATTGTGTGGAATATGCTAGTTTATGGTCATGTAAACATCAAGTAAAGTGAGAGGTTGCTATGTCAATAAATAGTCAACTGCGACAACTGTAAATCAACGTATACTGATTATTTTGTGCGCTGTTCACAACTGCATGCGTGACTCATTTGGTACCAATGAAGCAGTTGGTGTGCCTACGTCACCTTCTGTTACCCTTCATGTGCTAGCTACTGATATATTTTATGTCACAAAGGTTTTGGTCTTTTGAAGAATGCAAGGCATTAACAACTGTGCATGTACAGCTAGTGCAATGGATTGGTCTTTATCTAGAATGCTGTTAAGTCTACATATGGCTGCTATCCTAAAAAATGGCAGTTTATGATAATTTCCTTTGTGGCTGAATCAGTGCTTGTTGCTTTTCTCTGCTTGATTCTTTGTAACATGCAATTGTGAACATACCACACTTGATCAATGTGCTAGCTATAAGGGAAATGGGAAATGTGTTTTGGTACCAAACCAATGTACAGGAAATCTATGGATCAAATATCCCATGAGGACACTGCCCTTAGCAGTGTGTTTAGTCCTAGTCTATCATGTATGATAAAAAAAACCTCAGcggaggtgtgtaacatgttaaaTGTACCCATTTATCATGATGTTCTAAGCTTCAAGGGTGGAAATCAAAGGAAAGTTATACTACTTCTATTTCAATGCTCGGTGAAATGTTTCCCAATAGCATCCAATAGCATCCAATAATGTTCTCCTTCTCATTGAGTTTTAATTCTCGTTTTGATCATCCGATCAATGAAGCAGCTTTTACTTGTATCGCCACATCAGTTAATCATACTCCGAGTATCGAATAAAACAACTAATAAACAAGCTATCAAGAATCCACAAAAGAGTCATCAATATTGCAGGTCAAAGTTCAATCGTGCACAGGCAAACAAGCACATTCTCACACCCATATCAGAATTATGCTCAGAATAAGATATGGGCTATGACGTACATGTTAGTGTTTAATGACAGTGCATATATGTGCTTCCCACTATAGTCTCTTTTGAAACACATATATTGCACCAAAAGTAAATATATCTAAATGTCTTTCAAACTCAAAACAAATATCAATTGAAATCTACTGAAAATATATCACAATGTTTCACTGAAGTTTAGTATATCCTTTCCATACCTTTGTGTCTTATTTTCAACTTCATTATTTTGAAGATTTTCACTTCACTTTTAACATCTACTTCCTGTATGGAAATATCACACAAAAAATGAAAACGGATGTTTCAGTTGAGCACATTAAAATGGTTTGATGTGTTTAAGGGATGCGAGAATGTTCCAGAAATCCAAGGTCAATGTTAGAACAGCCGAATGATATCAAAGGCAGTGTGATTTCTCTCGTGAAAAGGACATGGATATAACATCTAACATCTGACTTATTGATCTACAGTAACATGATACACTTCAATGCCACTTTCATATCGTGTTCTATCTTTCTAGCAAACTGTCCATGAATTCACTTACATACTTAGTTAAATGCATACCACtttccaaaaacacattttgtaAGAGTAAAACATAATGCCTAAGACAGATGGAACAAAGAAGGCATTTCTTACTACAGGATATATGAAGCAAGAATGCCGATTGAACTGTGGGATTTTAAACGTTTGTTTAAAACGTGACAATAGTAATAACTACTGTAACAAGTTGTGACAAGAGTCATATTTGCATCCGCAAACATTTGTGCTTTAAACGTGGAATGTTTGAACAAAAGTGTTGTTCTAAAATGTACATGGAGAACAATATGGGCTGAACAAATTTCAACACAGTCAGAAATTGAGATTTGAAGGATTGATTTGAGCAGCCGTTTATGATTGACTGAGATAAGAACGGCTAGAAAGAATGTTTTAAAGGGGAAAAGCTCAACAGATCACTTTTGTCAACAGTCTCATTCAAACCATAATGAAAAGTAAACCTGGAATGTTCTAGCATCTATAAAATGGcagttattttgtacataaaatAAACACAAGACCTTGGAAGGTGTGATAATGAGGAGAGGCCTTGGTTTAACGAAATGTTCTGGTTGACCCATTAAGTCAAAAATGGTTCAAATCAAGGCATAACGCATCATTTTTGACTGACGTTCTCCCATAACAATGTAGACACATGTAGATGGGAAGTGAGCTGAGCTTATCGGAGAAATTGGTCTGAATACAGATCGGATGGCTAGTGGTCATTTCTATTACGGGCTATTGGCATGGCTCATAAACTAGACCCCATGTCCCTACCCCATAACCCCATAAATCTGTCTTCATTTTGGGGACCTGCATCTAAACTAGTTCCTCAACCCTCCTAAACACATACACTCAGTGATTAAGATTGCACTGAACAAGCATTAAAGTTGGAACAGCTTCTGTTGGTCTAGGGGCAGAGTTTGGTTGCACTTCCCTTCCTCGACCAACTCACAGCATATTCATGGGGATCAATGTCAAGCAGCGGCAGCACAGTTCCACAGATCTTAGTAGTATAGAGATGTGTCTATCTAAACAGTACATCCAATATCAGGCAATCCACAATATTTACAACTTAGTAGATCTGTGCAGCATCTGCATTGAACTAATTCCTGTGAATAGGCTGTGACTTCAATGGGGCGTACAGGGCAGAGTTTAGGGGTTTCTTGGGCTGCTTGTTGTTCACAGTGTGGCTTACTCATTCCGGCCCCCCACGTTGCCCCCTAGGGGTGTGGCCACATTATTGCAGCACCTGGCCCCGTGTCTCCGGCAGCTTGAACGCCAGGAAGCTGCCCGCTGCAAGCGCCCCGGAGGCAAACAGGATGGGCACAGCCTTGGTAATGCCCACGAAAGAGGTGAAGATGCTGATGCCCAACACGGCTGCCAGCTTACAGAGGGCGTTTAGAAAGCCAAACGCTGTGCatct

Function

NR:

description
synaptic vesicle glycoprotein 2A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153777 True 4205 lncRNA 0.37 2 33256492 33260732

Neighbor

gene id symbol gene type direction distance location
LOC110487588 NA coding upstream 96430 33130317 ~ 33160062 (+)
tmem176l.1 m4a8a coding upstream 207204 33045832 ~ 33049288 (+)
LOC110487536 NA coding upstream 210771 33028873 ~ 33045721 (+)
LOC110487571 m4a8a coding upstream 222639 33030310 ~ 33033853 (+)
LOC110487479 LOC106605309 coding upstream 254486 32988834 ~ 33002008 (+)
LOC110487649 LOC106581815 coding downstream 55558 33316290 ~ 33321834 (+)
LOC110487688 LOC106605287 coding downstream 146077 33406809 ~ 33408519 (+)
ntrk1 LOC106605284 coding downstream 173966 33434698 ~ 33460997 (+)
LOC118939517 NA coding downstream 270858 33531590 ~ 33540695 (+)
LOC110487797 LOC106605278 coding downstream 407411 33668143 ~ 33694941 (+)
G133523 NA non-coding upstream 3186 33253087 ~ 33253306 (+)
G133520 NA non-coding upstream 11212 33244997 ~ 33245280 (+)
G133439 NA non-coding upstream 83114 33144374 ~ 33173378 (+)
G133432 LOC106605295 non-coding upstream 120866 33102930 ~ 33135626 (+)
G133527 NA non-coding downstream 2881 33263613 ~ 33264167 (+)
G133542 NA non-coding downstream 31808 33292540 ~ 33294126 (+)
G133563 NA non-coding downstream 62411 33323143 ~ 33323421 (+)
G133564 NA non-coding downstream 63947 33324679 ~ 33324919 (+)
G133565 NA non-coding downstream 64408 33325140 ~ 33325355 (+)
G133473 LOC106605294 other upstream 87114 33167438 ~ 33169378 (+)
G132342 LOC100136303 other upstream 1368920 31834170 ~ 31887572 (+)
eaf1 LOC106581241 other upstream 1890170 31360408 ~ 31366322 (+)
LOC110534710 LOC106605356 other upstream 1963458 31262054 ~ 31294577 (+)
G131517 ccne2 other upstream 2506538 30748055 ~ 30749954 (+)
G133663 LOC106605282 other downstream 235722 33496454 ~ 33497285 (+)
G133760 LOC106605274 other downstream 553301 33814033 ~ 33814483 (+)
G134735 LOC100136012 other downstream 701685 33962417 ~ 33962658 (+)
si:dkey-30e9.6 LOC106605205 other downstream 1427223 34687955 ~ 34692286 (+)
G135916 NA other downstream 1710908 34971640 ~ 34971931 (+)

Expression


Co-expression Network