G158942


Basic Information

Item Value
gene id G158942
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 54291974 ~ 54292241 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU181465
ttctctttgcttatttgagctgtttttgccataatatggacttggtcttttaccaaatagggctatcttctgtatgcccccctaccttgttacagcacaaccgattggctcaaacacattaagaaggaaagaaattccacaaattaacttttaatgcacacctgttaattgaaatgcattccaggtgacttcctcatgaagctggataagcaaatgccaagagtgtgcaaacctgtcatcaaggcaaagggtggctactttgaagaat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181465 True 268 lncRNA 0.38 1 54291974 54292241

Neighbor

gene id symbol gene type direction distance location
dgkzb LOC106560764 coding upstream 100387 54100767 ~ 54191587 (+)
kcnj11l irk11 coding upstream 322811 53941853 ~ 53969163 (+)
bbs4 LOC106560769 coding upstream 365151 53905934 ~ 53926823 (+)
LOC110491599 NA coding upstream 393783 53894134 ~ 53898191 (+)
snx22 LOC106560771 coding upstream 401236 53867516 ~ 53890738 (+)
itga11b itga11 coding downstream 72677 54364918 ~ 54455954 (+)
cln6b cln6 coding downstream 181782 54474023 ~ 54486909 (+)
calml4b calml4 coding downstream 199484 54491725 ~ 54504596 (+)
spg11 spg11 coding downstream 560571 54852812 ~ 54944780 (+)
LOC110491832 LOC106560753 coding downstream 659660 54951901 ~ 54976149 (+)
G158939 NA non-coding upstream 1623 54290098 ~ 54290351 (+)
G158887 NA non-coding upstream 75477 54213612 ~ 54216497 (+)
G158841 NA non-coding upstream 99088 54192610 ~ 54192886 (+)
G158839 NA non-coding upstream 99804 54191842 ~ 54192170 (+)
G158829 NA non-coding upstream 205183 54086475 ~ 54086791 (+)
G158944 NA non-coding downstream 959 54293200 ~ 54293458 (+)
G158945 NA non-coding downstream 1476 54293717 ~ 54294007 (+)
G158946 nox5 non-coding downstream 1935 54294176 ~ 54294411 (+)
G159405 NA non-coding downstream 51429 54343670 ~ 54343948 (+)
G159407 NA non-coding downstream 51768 54344009 ~ 54344375 (+)
G158778 LOC106560766 other upstream 270070 54021608 ~ 54021904 (+)
G156000 LOC106560791 other upstream 2467792 51816510 ~ 51824182 (+)
G155541 NA other upstream 2870852 51420847 ~ 51421122 (+)
rl28 rl28 other upstream 2874856 51412121 ~ 51417154 (+)
LOC110501653 LOC106560673 other upstream 2969541 51317121 ~ 51339537 (+)
G159415 NA other downstream 60742 54352983 ~ 54353388 (+)
G159889 LOC106562215 other downstream 436055 54728296 ~ 54728860 (+)
G160569 NA other downstream 1653902 55946143 ~ 55947245 (+)
G161687 NA other downstream 1952803 56245044 ~ 56252598 (+)
G162130 NA other downstream 2756073 57048314 ~ 57053642 (+)

Expression


Co-expression Network