G161858


Basic Information

Item Value
gene id G161858
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 56334488 ~ 56334912 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU184612
gtttatcagtctctcggtcccagctttgatgcacctgtacggacctcgccttctggatgatagcggggtggacaggctgtggctcgggtggttgatgtccttgatgatctttttggccttcctatggcatcgggtgctgtaggtgtccaggagggcgGGAAGTTTGTCCCCGGTAATacattgggcagaccgcaccaccctctggagagctttgcgggtgtgggcggtgcagttgccgtaccaggaggtgatacagcccgacaggatgctctcaattgtgcatctttaAAAGTTTATGAGGGTTTTAGGTGTTAAGCCAAATTTCAtgagcctcctgaggttgatgaggcgctgttgcgccttattcaccacgctgtctatgtgggtggaccatttcagttcgtcagtgatgtgtatgtcgagga

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU184612 True 425 lncRNA 0.53 1 56334488 56334912

Neighbor

gene id symbol gene type direction distance location
LOC110492043 catsper2 coding upstream 105411 56207828 ~ 56229077 (+)
LOC110491996 LOC106561096 coding upstream 163524 56146461 ~ 56170964 (+)
acanb LOC106561101 coding upstream 278108 56032490 ~ 56056380 (+)
LOC110491898 map1a coding upstream 402904 55861422 ~ 55931584 (+)
scamp2 scamp2 coding upstream 477188 55841445 ~ 55857300 (+)
LOC110492132 LOC106561087 coding downstream 151785 56486697 ~ 56497109 (+)
LOC110492152 LOC106584663 coding downstream 172724 56507636 ~ 56518535 (+)
LOC110492171 LOC106561080 coding downstream 233662 56568574 ~ 56620288 (+)
LOC110492185 LOC106561079 coding downstream 286527 56621439 ~ 56633187 (+)
LOC118944174 NA coding downstream 297814 56632726 ~ 56632853 (+)
G161857 NA non-coding upstream 872 56332972 ~ 56333616 (+)
G161821 NA non-coding upstream 33149 56300871 ~ 56301339 (+)
G161724 NA non-coding upstream 35084 56299084 ~ 56299404 (+)
G161722 NA non-coding upstream 37406 56296851 ~ 56297082 (+)
G161716 NA non-coding upstream 45205 56288952 ~ 56289283 (+)
G161862 NA non-coding downstream 717 56335629 ~ 56335917 (+)
G161866 NA non-coding downstream 1507 56336419 ~ 56336621 (+)
G161886 NA non-coding downstream 26695 56361607 ~ 56362081 (+)
G161893 NA non-coding downstream 45711 56380623 ~ 56382309 (+)
G161949 LOC105006114 non-coding downstream 138848 56473760 ~ 56474977 (+)
G161687 NA other upstream 81890 56245044 ~ 56252598 (+)
G160569 NA other upstream 387243 55946143 ~ 55947245 (+)
G159889 LOC106562215 other upstream 1605628 54728296 ~ 54728860 (+)
G159415 NA other upstream 1981100 54352983 ~ 54353388 (+)
G158778 LOC106560766 other upstream 2312584 54021608 ~ 54021904 (+)
G162130 NA other downstream 713402 57048314 ~ 57053642 (+)
G163513 LOC106561046 other downstream 1593238 57928150 ~ 57931991 (+)
G163660 LOC106561040 other downstream 1880765 58215677 ~ 58216383 (+)
G166131 lmod2 other downstream 3610796 59945708 ~ 59953165 (+)
G166878 NA other downstream 4180720 60515632 ~ 60515880 (+)

Expression


Co-expression Network