G163662 (LOC106561040)


Basic Information

Item Value
gene id G163662
gene name LOC106561040
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 58216991 ~ 58223485 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU186701
TTCTTTAGGAGGATCTCGGAGGCTCCTTTGCTGAACATCCTGTAGCTCCCATCTGCGTTCTTCAGCACTGTGctcatggacttcctgactgaGTTGAAAGTGTAGACCTTGAAGAGCTTCTCCTCTGGGATCTCATTGCGGATGGTCATATAGTCACGTCTCAGTTCCAAGACAAAGCCCAGCAAGGCACATTCGGTCTTGTTGCCCACCTGGCGTGGCAGCCCGCCCTCCTTCTCAGGAGACATGATCTTGGATGTGTACGCACAGTTGACTCCGATGCCCATAATGAGCAGGTCCAAGACTTTGCCTGGGATGAGGTCAGACTCAGGAACCACCCTGTAGTGCCTATCTCCCAGATAAGCCTGGACCACGGTCATCCTGTTCATGGTTAACGTCCCCGTTTTGTCAGAGCAGATGGCTGTGGCGTTGCCCATGGTTTCACAGGCATCCAGGTGCCTCACCAGGTTGTTGTCTTTCATCATTttTTTGACAGAATACGCAAGTGAGATGGTGACGGCCAGGGGGAGACCTTCGGGTACGGCCACCACAAGCACGGTAACACCAATGATGAAGAACTTGACGCAGAACTGAATGTAGATGGGCGTGCAGTCCGCGATCCACGGTAGGCCCTGGATCCAGAAGGTGTCCACCATAAACAGAGTTATCAGGATGATGACTGTCAACCCTGACATGAACAGGCCCGCTTTGCCGATCTGCACCGCTAATTTGGTCAATTTCCCCTGGAGCACAGACTTCTCCTTCTTCGGGTGggctttcttcttctcctccccttcgtcGTCACTGTTGAGGGCCTGCATCTCCACGCCTGCACCATCCTGAGACTTacCTTTCTTGTTTTTCTCATCTCTTTTATTTTTCTTGTCCAGTTTGTCCTTCTTGTCCTTcttttctttcttctctttctttctcctctctttctccttcttcttctcctccctttccctctttttCCTTTCCTTCTCTGCTTTCTCCTCCTCGTCGTCGT
>TU186702
CTGAGTTCTCAGATTTCAAGAGGATTTGGCCCTGGCTTGAAATCCCTGACCTGGCACTCAACGTATTTGCTCAGATGTCAATGAACGATTGCTATGAAAAGAGCTGTATTGCACATCTCTTTGTGTTCTGTTTGACAGAGGTGAAAACCTCAACTCGTAGTCTCAAGTGAAGTATGTTCACTTACCATGATCTTGGATGTGTACGCACAGTTGACTCCGATGCCCATAATGAGCAGGTCCAAGACTTTGCCTGGGATGAGGTCAGACTCAGGAACCACCCTGTAGTGCCTATCTCCCAGATAAGCCTGGACCACGGTCATCCTGTTCATGGTTAACGTCCCCGTTTTGTCAGAGCAGATGGCTGTGGCGTTGCCCATGGTTTCACAGGCATCCAGGTGCCTCACCAGGTTGTTGTCTTTCATCATTttTTTGACAGAATACGCAAGTGAGATGGTGACGGCCAGGGGGAGACCTTCGGGTACGGCCACCACAAGCACGGTAACACCAATGATGAAGAACTTGACGCAGAACTGAATGTAGATGGGCGTGCAGTCCGCGATCCACGGTAGGCCCTGGATCCAGAAGGTGTCCACCATAAACAGAGTTATCAGGATGATGACTGTCAACCCTGACATGAACAGGCCCGCTTTGCCGATCTGCACCGCTAATTTGGTCAATTTCCCCTGGAGCACAGACTTCTCCTTCTTCGGGTGggctttcttcttctcctccccttcgtcGTCACTGTTGAGGGCCTGCATCTCCACGCCTGCACCATCCTGAGACTTacCTTTCTTGTTTTTCTCATCTCTTTTATTTTTCTTGTCCAGTTTGTCCTTCTTGTCCTTcttttctttcttctctttctttctcctctctttctccttcttcttctcctccctttccctctttttCCTTTCCTTCTCTGCTTTCTCCTCCTCGTCGTCGT

Function

NR:

description
plasma membrane calcium-transporting ATPase 1-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186701 False 1006 lncRNA 0.36 6 58216991 58223485
TU186702 True 949 lncRNA 0.49 5 58217346 58223485

Neighbor

gene id symbol gene type direction distance location
LOC110492604 LOC106561042 coding upstream 105811 58110123 ~ 58111180 (+)
LOC110492579 LOC106561044 coding upstream 107548 58040338 ~ 58109443 (+)
LOC110492531 LOC106561047 coding upstream 419357 57795263 ~ 57797634 (+)
LOC110492500 LOC106561050 coding upstream 427596 57667227 ~ 57789395 (+)
ush1c LOC106561052 coding upstream 561395 57606860 ~ 57655596 (+)
LOC110492647 LOC106561039 coding downstream 30119 58253604 ~ 58296746 (+)
LOC110492681 LOC106561133 coding downstream 92792 58316277 ~ 58322551 (+)
LOC110492721 LOC106561036 coding downstream 573898 58797383 ~ 59033367 (+)
LOC118937284 LOC106609580 coding downstream 1164465 59387950 ~ 59390103 (+)
LOC110492752 LOC106561032 coding downstream 1178692 59402177 ~ 59643249 (+)
G163591 NA non-coding upstream 40692 58116793 ~ 58176299 (+)
G163544 NA non-coding upstream 217496 57995304 ~ 57999495 (+)
G163499 NA non-coding upstream 243212 57903837 ~ 57973779 (+)
G163464 NA non-coding upstream 371554 57845123 ~ 57845437 (+)
G163438 NA non-coding upstream 422129 57794549 ~ 57794862 (+)
G164289 NA non-coding downstream 272707 58496192 ~ 58497512 (+)
G164304 NA non-coding downstream 280563 58504048 ~ 58504313 (+)
G164307 NA non-coding downstream 282395 58505880 ~ 58506095 (+)
G164312 NA non-coding downstream 285824 58509309 ~ 58509560 (+)
G164317 NA non-coding downstream 290690 58514175 ~ 58514592 (+)
G163660 LOC106561040 other upstream 608 58215677 ~ 58216383 (+)
G163513 LOC106561046 other upstream 285000 57928150 ~ 57931991 (+)
G162130 NA other upstream 1163349 57048314 ~ 57053642 (+)
G161687 NA other upstream 1964393 56245044 ~ 56252598 (+)
G160569 NA other upstream 2269746 55946143 ~ 55947245 (+)
G166131 lmod2 other downstream 1722223 59945708 ~ 59953165 (+)
G166878 NA other downstream 2292147 60515632 ~ 60515880 (+)
LOC110493059 LOC100194658 other downstream 2627947 60851417 ~ 60866455 (+)
G167288 NA other downstream 2839108 61062593 ~ 61074591 (+)
G167325 LOC106561003 other downstream 3008711 61232196 ~ 61232545 (+)

Expression


Co-expression Network