G188991


Basic Information

Item Value
gene id G188991
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 79240052 ~ 79240610 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU214297
agATATAACTTAATTTTATTATGCATAcactggggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccactcaaaaagatgagagaggcctgtaattttcatcataggtacacttcaactatgacagacaaaataagaaaaacaatccagaaaaacacattgtaggatttttaatgaatttatttgcaaattatggtggaaaataagtatcctacctatctctctgatttggtcctgccgaacatacctacacgtacgctacggtcacgacgcaggcctcctaattgtccctaaaatttctaagcaaacagatggaggcagggctttctcctatagagctccatttttatggaacggtctgcctacccatgtcagagacgcaaactcggtctcaacctttaagtctttactgaagacttatctcttcagtgggtcatatgattgagtgtagtctggcccaggagtgggaaggtgaatggaaaggctatggagcaacgaaccgcccttgctgtctctgcctggccggttcccctctttccactgggattct

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU214297 True 559 lncRNA 0.41 1 79240052 79240610

Neighbor

gene id symbol gene type direction distance location
LOC110497158 LOC106573351 coding upstream 4143 79177028 ~ 79235909 (+)
LOC110497132 pamr1 coding upstream 88693 79103574 ~ 79151359 (+)
LOC118944149 NA coding upstream 308576 78931423 ~ 78931476 (+)
LOC110497055 LOC106561315 coding upstream 659862 78578149 ~ 78580190 (+)
LOC110502110 LOC106561316 coding upstream 682784 78537027 ~ 78557268 (+)
LOC110497165 lrrc4c coding downstream 676312 79916922 ~ 80048182 (+)
rag2 rag2 coding downstream 1483750 80724360 ~ 80727535 (+)
furinb LOC106561302 coding downstream 1539449 80780059 ~ 80977313 (+)
LOC110497237 rccd1 coding downstream 1750368 80988887 ~ 80994869 (+)
LOC110502143 LOC106573336 coding downstream 1788731 81029341 ~ 81031876 (+)
G188990 NA non-coding upstream 1157 79238649 ~ 79238895 (+)
G188965 NA non-coding upstream 42460 79197088 ~ 79197592 (+)
G188946 NA non-coding upstream 64231 79175505 ~ 79175821 (+)
G188945 NA non-coding upstream 64624 79175206 ~ 79175428 (+)
G188890 NA non-coding upstream 138329 79101400 ~ 79101723 (+)
G188992 NA non-coding downstream 1058 79241668 ~ 79242328 (+)
G188994 NA non-coding downstream 3005 79243615 ~ 79245118 (+)
G189241 NA non-coding downstream 116475 79357085 ~ 79357290 (+)
G189253 NA non-coding downstream 124004 79364614 ~ 79364817 (+)
G189385 NA non-coding downstream 286285 79526895 ~ 79625282 (+)
LOC110496993 LOC106561317 other upstream 733120 78467699 ~ 78519071 (+)
G187320 LOC106561323 other upstream 970007 78267289 ~ 78270045 (+)
G187260 NA other upstream 1062469 78137513 ~ 78177583 (+)
LOC110502077 LOC106561326 other upstream 1191252 78047373 ~ 78066844 (+)
G191052 NA other downstream 1514531 80755141 ~ 80756647 (+)
G191057 accs other downstream 1524722 80765332 ~ 80766714 (+)
LOC110497314 cfap44 other downstream 1824944 81058184 ~ 81080502 (+)
LOC110497320 paf other downstream 1843218 81083756 ~ 81086188 (+)
LOC110497665 LOC106561427 other downstream 3125675 82366183 ~ 82393779 (+)

Expression


Co-expression Network