XLOC_002161


Basic Information

Item Value
gene id XLOC_002161
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 26269060 ~ 26273148 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005901
TGGAGACTCAGGTTTGACAAAAgaaatttattatttgatttaaatatgcACAGATGATTGACGCTCTTCTGCTGTCGGAATTTCAGGTTGTTTTCCAGACTGTGAGACAAATAAATGTCACCTTCTAAAAAGAATTGGGTTAAACAGACTTCTAAATATGCCAGGCTCTTCTTTTCCTTTGCATTTGTTGTGGGTGCTAGCAGGGGCCTGTTAAACCTGAGGCAGTGGCGGTATCAGGCACGCACCGGAGGTAGCAAAACATCTCCGGAAATTCATTCAAATGCTTAATTAGCTTTTTACACATAAGATTGCGAGATAAAAAAGCAGGGCACTTCCTCTTAAAGCAGAAATTGTCCACCAGATTTTACAAAAGAGGGTACAATTTCTGTGATTCACCCTGAAAGGCAAATAAACACCATTCCGGAtaatgaggatttttttttttcttaatttaaaatgaaccaaTCGTAAGTTACATAGacaatacaaaacattttattgtcaGAAAAAAGCAGCATAGAAACAGTGTGAGAGAGCTGCTGTTTTGGAAGAAATTAATTTACATACAGAAGAGTCTTTGAGGTTTCACCAATATCCAAAAAGTCATAAACAAACATACGTAATGACATAAGTTTGAGTTTCTACAGAGTTCTCATTGCGGTCTACAAGGTATGACAATAGCAGCTATTTTGGATGAACTTAACATAACACTGGAGTTTCAAAGCTGTTTGAGTCATCAgtataaaaagaaacaaacaaaaagagcagtcaGCATCTTGACTCCCTGGCCAGCCAGTGAGACAAAACAAAGCAATGCGCAAACAACTCTTCACATCAACACTGCGGTGGCTCTGAAGAAGGGTAACGTGGCCGCACAATGTTTGCACCCTTTCCGTTAACAGACACCTGCGTCACCGTCATGGCTGAGACTGATTCTTCATGCTGCATTTTTAAGCGTTAAACATTGCTGAGAGTGACTAATACGTCTTATCAAAAGACAAAATAAGGCCTCCACGGAATGGAGTTAAATGCAGCATTAAATCCTCATCTCAGCCTCATCAGTGTGCTCCAGAGTGTGTTCTGTGGTGCTGATGATGGAGGCTGAGGGACCTTGAGTGACACCGAATGGAGAAACAGCTGGGGACCGTGCAGCAAGTGGGGACAAAGAAGGGGAGAAACTGGGAGACATGGCTGCTGAGGAGATGGAGCCTTCATGGCTTATAGGTGAGCGCCTTAGGGATGCTAAGGTGTGGAACGTCCGTGTTATGGCAGGTTTGGGTGGAACAGATTTGGCCCCCGGATGAGCCACTGAGGTAATGAGAGGTGGAGGGTCAATCCTAGGCTTGGGATCTGTCTTGATTTTGGGTTGGAAAGGTCTCCGTGGGTTGTTAGGAGGTAAACTTTCGTCTTTTAGCCTGGCAATCTCCGTAAAGACACTGGCTAAGGGTTGGAACTGAGGGCACCAGTTGAGAAGATAGTCCCAGTTGTAGCTACCTCGCAATTCCTCATCACTTGCTACTATGGCCGTGAGAGAACCGTCAACCGGGGGTTTGCCATCCTCAGGGAAAGCATAATCTTTCGGATGGGAAATATTCAACCCACGACCTACTCCAAGATAGCCGCCGCCTTCATCTCTGTAGACTGGGAGCTGACCAGAAAGCAGGGTACCACTGAGGCTTCCACTAATGCTCCCCAGTTTCTTACTTTTGAACCACTGGCTTGCATCAAGTGGACCTGGTTCACAAGAAATATCAGAGAGCTGGTCTGCATCTTGCTGGATTCCTGAATCAGGGCCCCTGGCAGAAATGTGCTCTTGCATGGAGGATGTGATGCTTGCCACTCTTGGGTACTCATTGATCATCCGAATTTCATCATCCTCTGCTGCTTCGGCAGATCCCCGTCCACTGGAGTGAGAAGGATCTAGGGATCCTCCTCGAGTGTAAGAGCCTGCACCTGTTCCTTCCTCATCCCCTGCATATCCAGGAAGGGCCTGATGATAGATCCTGTCACTCCCTGAGGGTTTAGATTCATCCAACTTCTGCAGAGCTGTGCCTGAAGATGCAGTACTGTTTCCAGCATCTTGTCCTTTCTTCTTGCGCTTTGATCTTACTAAATAGAGAGCAACAGCTATTATGACTAACAAGACTATTACACCAAGAGAGGCAGCAATTATGCTGACAAGGAGAATGTTAAAGTCTGTTGCAAGACCAAAGGATGTGTTCGTGACATCGATGATGACCTGAGCAGAAGCTACTCTTGAGGTGTCAAGCGGGCTGTGGGCAGAAACATCCATAGTCATTAGGCGGGTTTCCCTCTTTGAACGACTACCACCACTTGAACTGCCAGAGTTGTCCATCTTTAGGTAGATAACGCCAGTGGTCTTATTAACATCAAAGTATGGAGAGGAATTGGGGAAGGAGTAGAGTACAATCCCATCCACCCCACCATCCTCATCTTTGGCCTGTACTAGCCCAATGCTCTGACCTTTCTTGGCTCCCTCAGGAACTTCAAAAGACAAATCTGAAGTGGTAAAAACTGGGTCATACTCATCTTCTCCTGTAATGAAGACCTGCACTGTGACAGTAGCTGAGTTGTTGCCTGCATCCACAGCCAAAGCAATGAAGTTGAACGAGTTCACCTTCTCAAAATCAAATATCTGCTTGGTACGAACTTCTCCTGAGTTCTGATCTACAAAAAAGAGGTCTTTCCCAGGGCTGGAGTGGTCCATCAAATAATACTTCAGTTGCCCATAAACTCCTGTGTCATAATCAATGGCATGTAACACGGTTACAGCAGAGTTAAGAGGCTGGTTTTCACGAATGCTGGCTGTTAATGTAGCAATCGGAAAGTAAGGTCTGTTATCATTGATGTCCTTTACCTCAACACTAATAGGTGCCAAAGCAAATCGACCATGGCCATCTGATGCTTGTACTATTACTACATGGGAATTTTGGCTCTCTCTGTCTAAAGGCCTTTGGAGCTTCATAGCACCAGTCCACTGATCCACAGAGAACAGCTTCATATCATCTCCAGAGCTGATGCTGTACTGGACCTCTGCGTAGGGAGCTGAATCAGGATCCGTTGCAGTCACACGTAAGATTTCTGCACCAGCAGCTGCCCCTTCACTCAAAGCCACTATGTATTCAGCTCTgccaaaaacaggagggttgtcaTTCACATCAGTGACTGTGATGATGGCTGGTACACTGGAGCTCCGTTGGGGAACACCACGATCCGAAACTGAAACGGTGAGGTTATAGTGTGACAATGCTTCAAAATCCAGTCGCTCAGCCAAGATCAGGGTTCCTACAGTCTGGAAGCCATGACCTTCAATGAAACGAACACTGCTCTCAATCTGGAAAGCATTTCCAACATTCCCACTGGCAATTGCAAAATCAAAACCAGAGTTTTCCTGAGACAGGTCTCCATCTACTGCTTCTAAGGTAAGGATGGTGGCTCCAGGTAGCTGGTCCTCAGACACTGTGGCTTTGTACTCCAACTGGTGGAATATGGGGGCGTTGTCATTGACGTCCATCAGTTGAACTTGAACTGTGGCAGATGATGACAGAGGTGGAGACCCTCCATCACGAGCTTCGATGACTATACTGACAGAGGGCTCCTCTGGGTCAAATTTTGCTTTCTGCCTGATGAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005901 True 3653 lncRNA 0.46 2 26269060 26273148

Neighbor

gene id symbol gene type direction distance location
XLOC_002160 trim47 coding upstream 140881 26118122 ~ 26128179 (+)
XLOC_002159 frem2a coding upstream 152424 25982212 ~ 26116636 (+)
XLOC_002158 BX530083.1 coding upstream 304661 25964284 ~ 25964399 (+)
XLOC_002157 ufm1 coding upstream 307002 25947946 ~ 25962058 (+)
XLOC_002156 NA coding upstream 503489 25762203 ~ 25765571 (+)
XLOC_002162 BX530069.2 coding downstream 33081 26306229 ~ 26306343 (+)
XLOC_002163 synj1 coding downstream 242798 26515946 ~ 26569350 (+)
XLOC_002164 NA coding downstream 291073 26564221 ~ 26564521 (+)
XLOC_002165 slc9a6b coding downstream 298026 26571174 ~ 26597800 (+)
XLOC_002166 fhl1b coding downstream 324842 26597990 ~ 26621189 (+)
XLOC_002154 NA non-coding upstream 566653 25687634 ~ 25702407 (+)
XLOC_002148 NA non-coding upstream 1433615 24834759 ~ 24835445 (+)
XLOC_002147 NA non-coding upstream 1449901 24815304 ~ 24819159 (+)
XLOC_002167 NA non-coding downstream 355645 26628793 ~ 26629282 (+)
XLOC_002174 CR545465.1 non-coding downstream 493237 26766385 ~ 26771677 (+)
XLOC_002175 NA non-coding downstream 513221 26786369 ~ 26786785 (+)

Expression


Co-expression Network