XLOC_002163 (synj1)


Basic Information

Item Value
gene id XLOC_002163
gene name synj1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 26515946 ~ 26569350 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004171
TTTCTGTTCTTAAACTACCTGCCCCGCTAATCATTTTGTTTCTAGCCATATACGATATCCAACCGGGGCAAGACAGGCACAACTCTGACAGGACTGAAACAGGTTGTGTCGAGCCATGGCATTCAGTAAAGGTTATCGTATTTATCACAAGCTGGATCCACCTCCATACAGTGTGATTGTGGAGACCAGAAATCGAGAAGAATGTCTGATGTTCGAGTCTGGAGCTGTTGCTGTACTGTCGGCGGCAGAGAAAGAGACCATAAAAGCATCGTACACCAAGATGCTGGATGCCTATGGGATCCTGGGAGTTCTGCGTCTGAACCTTGGTGATTCTATGCTGCACAGTCTGGTGGTCGTAACAGGCTGCAGCTCAGTGGGAAAAGTCCAGGATTCAGAAGTTTTTCGGGTAACAGGCACAGACTTTGTCTCTCTGAAGAATGACCCCACGGATGAGGACCGGATCGCTGATGTCAGGAAAGTCTTAAACTCTGGGAACTTCTATTTCGCCTGGTCCTCAACTGGAGTGAGTCTGGATCTCAGCTTGAATGCCCATCGCAGAATCAGAGAAGACACATCCGACAATCGCTTTTTCTGGAATCAGTCCCTTCATCTCCATCTCAAGCATTATGGGGTGAACTGTGACGACTGGCTTCTGAGATTGATGTGTGGTGGCGTGGAGATCCGCACCATCTATGCTGGGCACAAACAGGCCAAAGCTTGTGTGATTTCTCGGCTCAGTTCGGAGAGAGCAGGCACACGTTTCAATGTCCGAGGCACGAATGATGATGGCCAGGTGGCCAATTTTGTGGAGACTGAGCAGATTATTTTCCTTGATGACAAAGTATCCTCCTTCATTCAGATCCGAGGGTCAATACCGCTATTCTGGGAGCAGCCGGGAATTCAGGTTGGATCCCACCGCGTTAAGCTGTCCCGTGGTTTTGAAGCCAACGCGCCGGCTTTTGAAAGACATTTCAGTGCTCTGAAAAGGCTGTATGGCAAACAGTTGATCATCAATCTTCTGGGAATGAAGGAGGGTGAACACATGCTCAGCAAAGCATTCCAGAGTCACCTCAAAGCTTCAGAGCATTCCAACGCTGTGAAAATGTTGAACTTTGACTATCATCAGATGGTTAAAGGAGGGAAGACTGAGAAGCTTCAGACTGTGCTGAAACCTCAGATCAGCAAGTTTGTGGAGGATTGTGATTTCTTCTACTACTCAGGGGAAACCGGCATTCAGAGatGTCAAAGCGGAACCATCCGTTCCAACTGTCTGGACTGCTTGGACCGAACAAACAGCGTCCAGGCCTTTATTGCACTTGAGATGCTTCCCAAACAGCTGGAAGCCATGGGTTTGACAGAGAAACCTCAGCTGGTGGCTCGTTTTCAGGAGGTTTTCCGCTCCATGTGGTCCACCAATGGAGACTCCATCAGCAAGATCTACGCAGGCACTGGTGCTTTAGATGGCAAGGCTAAGGGCGGAAAGCTAAAAGATGGAGCTCGCTCGGTCACCAGAACCATCCAGAACAACTTCTTTGACAGCTCTAAACAGGAAGCCATTGACATCCTGAGACTGGGCAGCACCCTTAACAGTGACCTGGCAGATAAAGCACGAGCACTTCTCACGACAAGCAGCCTATATGTCTCTGAGCCAATTTTACAGTCAGCCTCTCCAAGGGTGCTTCTAGGCATGTGTCAGAACCACTTCAAATACACTCGGCCCAAGAAGATCCGAGTATGTGTGGGAACGTGGAACGTAAATGGAGGCAAACAGTTTCGCAGCATTGCGTTTCGTAACCATACGCTCAACGACTGGCTTCTGGATGCTCCTAAGAAAGCCGGACACCCAGAATTTCAGGATGTCAAAAACAACCCTGTGGACATCTTTGCTATTGGTTTTGAGGAAATGGTGGAGCTGAATGCTGGTAATATAGTCAGCGCAAGCACCACAAACCAAAAGCTGTGGGCCGCAGAGCTGCAGAAGAACATCTCCCGAGATCAACGATATGTCCTGCTGGCCTCAGAACAGCTGGTCGGTGTGTGTCTTTTCGTCTTCATTCGCCCTCAGCACGCACCCTTTATCAGGGATGTTGCTGTAGACACAGTGAAGACTGGAATGGGCGGAGCCACTGGTAATAAGGGAGGCGTGGCTATTCGTATGCTCTTCCACACTACCAGCATCTGCTTCGTGTGTTCGCACTTTGCTGCCGGTCAATCACAAGTCAAAGAGAGGAACGACGACTATAATGAGATTGCACGCAAACTGTCCTTCCCCATGggTCGTCTTCTGTACTCTCATGATTATGTATTCTGGTGTGGAGACTTCAACTACCGAATCAATATTCCCAATGAAGAGGTGAAGGAGCTGATCAGACAGCAGAACTGGGATGCACTTATTGGTGGAGATCAACTGGTGGAGCAGAAGAATGCAGGACAGGTCTTCAGAGGCTTTATTGAAGGAAAGCTGGATTTTGCGCCCACTTATAAATACGACCTTTTTTCTGAGGATTACGACACTAGTGAGAAGTGCCGCACACCGGCCTGGACCGACCGTGTGCTGTGGAAAAGAAGAAAGTGGAACTTTGATAAAACTGcgGAGGAGTTGGAGTTGAATGTAGTAGGAGCTCCAGTGAATGAGGAAGAACAGTATCCATGGAGCCCTGGAGACCTCAAGTATTACGGCAGAGCTGAGCTGAAAACCTCTGATCACAGACCTGTGGTGGCCATCATAGATGTGGACATACTTGAGGTGGATCCCGAGGCTCGTCATCAGGTGTATAAGGAAGTGATCGCCCTGCAGGGTCCTCCCGACGGCACCATCCTAGTCTCTCTCTGCTCTTCTGGTCCCGATGACTACTTTGATGATGCTTTAATTGACGATCTTTTGGACAAGTTTGCTAATTTTGGCGAGGTTATTCTTATCAGGTTTGTTGAAGAGAAAATGTGGGTGACATTTTTGGAGGGATACTCAGCTCTGGCCGCTCTGTCTTTGAGTGGGTCTACTGTGAATGGAAAGACCATAGACATCCGCCTGAGGAGTCCTGGATGGATAAAGAGTCTTGAGGAGGAAATGAGTGTGGAGAGAATCTGTGGTAGTATTCCAACATCCACCAGCTCCACCCTGCTGGCAGAAAACTCTGACCTAGGAGAAGAGTATGACATGGAAGGTGATGTGGACGAGGAGGTTGAGGATATTTTACCCCAGCACCTGCAGCCTGGAGCAGGCATGGATCTGAGTGCGTCTCCTGCCACATCTCCACGCACCAGCCCATGCCCTTCACCCACTCACGGAGAGCCAGCACCACCCATCCGACCCAGCAGAGCGCCACCACGCACAGCCGGACCACCACAGGGTTCTCCAGTTGATGGTCAGCCAGCAGGAGCTCCATTCTCACAGGGACTAGAGCCAAAACGTCCCCCTCCGCCTCGCCCTAATGCCCCGCCAGCCCGACCTGCACCTCCACAGCGCCCACCACCACCCTCAGGTCGAGGTCAAGCCACCGGACCAGCTCCTGGAGGCATCCCAAGGCCGATCCCACCCCGAGCAGGAGTCATCAGCGTCACGCCTCAGGCCAGACCTCCTCCTCCTGCTCATCCCGGGGCCCCCAGACCCACAGCAGAGGTGCATCCTGGAGCCCCTCGACCCTCACCAGATAATCATCCCGGAGCTCCAAGACCCACTGCTGAACCCCAAAGCAAACCGTCTGAGCTGCCTCTGGGTCCACCCCTGACACTGCCAGGTCCCGTAAGGCCTCAGATGACATCACCCATGCAGCCTCAGTCTGTGTCGCCCGTTCAGCCTCCAGTCCAACCCCAACTGCCCCCACCCATACAATCCCAGCTCCCTCCACCAATGCAGCCCACCTTACCTGCTCCTCTGATGCCTCAGCAGGCCCCTCAGACATCAGCCGGAGCCGGAGCCGCTGCCGCCCCTCAGCCTGGACTGGCATCTCCCAAACCTCCACCCCGCAGCCGTTCCTCTCATGCACTGCCACCTGAATCTGCTCCAGCTCCAACAACACAGCAGGAGCAATCCTCAGGTTAACAGGCCAAGAACATGAATGGAGTCCAAAGAGAAGCACAATGGAACCTAGACCCCTTCGACATGCTTAACCCTCAATCCCTCTTCCAGAACACACCATTCACCGCTTCCCTCTCTCGCTCCTCATCCTCCTCTACATCCACTCCATCCCCTTCTTCCTCATCCTCAACGTTACCCAGCAACCTTTCCCTGTTCTCAGCTCCGGACACCAGCAGCGCTTCGTGTCTCCTCGCTCCCCCCGCCCCATCCCGCAGCAAATCCCAAGAGACCCTCCGTTGCTCCCCTAATCCATTCCTCACAGACATCCAACCAAGACCCAACAGCACCAACCCCTTCACCAGCGGGCTGCAGTCCTCCCCGCGCCGATCGCTTACACCTGATTTCTACACCCAAATGCAAGCCTCTAAACCTGATTTCAATAGAGCTATGTCTGCTGTAGGCCACAGTTCCACCCTTCCTCCAACGTTCTCCCGACAACAGTCCTTAGTTACTGCTACAGCTCCAGCCCCCAACAAACAAACGCAAAAGTGGGTCACCTTTGATGATGATTTGGATTTCCTTTCAAAAAGGGTTGGGACCGGCCCATTAGCTTCACCTCTTCCTTTTCCACAAACCCAAAGCAGTTTCCCAAGCTCAGGCTTTGGCATGGACAACAACTGGGCATCGCTTCCCACCTCTGCATTCCCAGCAATCCCTCCGCCTGTACCAACCCGGACTAATACCAGCATCAAAAACGCCCAACTCCCTTCCAGAAATGATTTCACAGAGAGATGATATAGAATGGATGTTAAATATGAAGGAAATATTATTGCGTATATGTATGGTTTGTATAAAAGTGCAGATATAATGACCTGTTCGTACAAAAAAAAAGGTAATCTGGCTGTTTATTTTAGCCCAATGTGGGCAGGAAATCAAGACTAAATGCTCTTCAGATTTGAATATGTTGTCATTTGCAAACATATGCATTGCAGCATTTAGCATATTGCACAAGCTACATAatcatttgtaaaaaatgtacaaatgttaaATGATATATCTCATCACAACGTCGATGTAATCGTTTTAATCACCCTCATGTCGAAACACAAAAATGAGAACTGTACTCTTTATTTTGGACTTTCATTATACACTCAAATCCAGTTCTATAATATGTTCTTAAGAAGAAACAAATAGACATGAAATGAGGGTGATTAAATAATGATTATTCCTAATTTTATTCATCAAATATCCCTTTATTCTATAACCCAATACATCCCAAGAGAAACATGCTCTTATCATACGCACAGATTTAAAATGCCTGGCTGCGTCTGACCTGTTCTACACCATCATATCTGTTCAATGGGCTTCACGTGAGCTGTGgtacatgcatacatattttacttttgccgTTAATCTCATTATGAATGTATTCACCTGTTTCTGTTGCCTACATTTAGGTTTAGAACGTGCGTCATGTGCAGCATTAACAGATGCTTTGCTGCAAACTCAAATCGAGGGTCTTAACTTCTCTCGGTGTTCATGCTATGCTAAAGACCCCGTGTCCCAGCCTCAGCACATCCTGTAGCTATATATCGTTGTCAGAATATATCTTCAACACATATTCATAGTGATTCTATGTCTTCCTAGtgaggaaaaaaaatgtaaagtgattCTGGATTGTGTTTATATTTGcagcatatacagtacatgcCATATCTAAAGTGCACTGAAAAGCTCCGTCTGTCTTCTAGGCTGTATTTGTTTCGCGCGGCGGCTCCTCTAATTCATCGACACTGTATATACATGTCCTTTCAGTTTACCCAAAGCTCACCACAGAACTGCTGTATTTATCAAACGTGTTGTGCGCGTGATTGAATTGGTAAGTTCCTCCTTCAGGATGTCGGTCATGCTTTCTTTTGTGCAATGTGTACCTAATCGCTCaatgaaattgtattttttaagttGAACAGGTTGTTGATAATCTATTTATTGTCGTGTGTGGAGGAATACTGTGCTGTATTTTGGAGTGCGTCGTCTGTTTTTGTGTACTTTAGCTGTTTTGCGCGAATGCGCTTGCGTGTTTGGATGGTAATGTTGAGGGTTTCTGGTGTCTTTGTTACATGTCTGCTGACCCCAGTGTCATTATTGCATTACATCTTCGTTGTTTTAGCGATGCAGATTTATTATGGTATCAACTATGGTTCATTATTGACAGTAAGGTGGTCTGTTAAATTAATATTCCGTCATGTTTACTCACACTCATGCTGTCCCAAACTGGAACCAAATCTTCAAAACACAATTGAAATGGACATTTCTGTCCTTACATTGAAAGTCTTCTCATTCAGAACTCTTAAAGGGATCAAATCaactaataaatatttataatttatagctattttcaaagtgttttatggGATGAAAAGATTTGATTAGTCTTTCATTCACATACAAACACAGATCAGCAAACCATGTTCAACAGCATTTCACTTTGGCATGCTTGCTTGACGCATGAGAACCAAGCAGGTTTGTTTTTGCTCGTCACATGGCAAGCTGAGCTTCTGTAAGAAACCAGTCAGTTTTATTCTAAAGTATCAGTGCTTGCATTTCTGTTTATGGTTGCAAATTAGTGTTTATATATGAATAAAAGCTTAAATGAAATCTGCCCAAccacatttatgtatttttagatCTCTTCATGAATAATTTAAAGtaagttttggatgaactaacttTTAATACAGGGTTAGAATTGCTTAGAAATGTCTTCATTTTGGTTCTGAAGATAAAAATTTTGGTTTGGATGTCATGAAGGTGAGTAACTGAAAACAAAttgtaatttttgagtgaactaacccttaaaaaGATTATGAATGGTGTAATATGTATGTTAATAATGCTTTGTTGATAAAAGTAAGATATTTTGGCGAATTTCAAATGTGTTTGAGCTCCCAGATGTGTTCAGTTTGTATAGCATTCCAGACGGTGTACTGATGCATTATGGGTGAGTGATCTGATTTTATGTGTGCagtcatttttattaatgttatgcAGGTTTTTAATGTCCCTCAAGGGCGTCATGAAACCATTCCTGGTTATAGTGTAAAGGTGTTtcaggaaacagtattttatttgtgCTTCTGTTCcttgtttacattttaggtacaaatttaaCATCTGCGTGGCTTTTCATATGTTCGCCTGGGACGTGTTGAGCGACGCATTTTGGCTTTGAgcattacagatttatttatgtaaagcactgaaaGTTTTTGGTTGAACAAGGGGTCAGAGGAATGCCAGCCAGCAGGAATTATTGCAAAGATTTATATTTGAATTAATGCATGAGAAACCATTTCAAAATGCATTCCAAAGCATTAACTGTGAACATCTCCAGAATACAGACTAGTATCAGGTTGtggataatattatttattttttctttaatgacTGATAAACGCAATGTAACCACTTAGCATTCAAAAGCATTTGTTCTGTATGTAATCAAAGCATTAATCCGGACATTGTCTGCAACAGTCATTAATGAGAAGCAAGGTTTTCTAGAAATAATCGACTCCTTTTGCGAAGTTAACGTTCCTTTGTAGCTTTTAGCCCAGTAGTGAACAGAAGTCTGTGGTATTAACCTTATATGTATGTAAAGACAAACCACAAAACTACAACTCGAATATTGGATCTGTAATTGAAGTGCATACCAAAAGTGCACATTTATGTATGGAGCAATTGATGTTGTATGTAtgcaataataaatgtaattcaacaTGAAA
>TCONS_00004172
GAGCATTCCAACGCTGTGAAAATGTTGAACTTTGACTATCATCAGATGGTTAAAGGAGGGAAGACTGAGAAGCTTCAGACTGTGCTGAAACCTCAGATCAGCAAGTTTGTGGAGGATTGTGATTTCTTCTACTACTCAGGGGAAACCGGCATTCAGAGATGTCGTTATATATGAATATGTACAATgtattaaaacgtttaaaattcGTAGCAAATGCGTTTTTCACTTCACTGTTTCAGGTAAAGTTTCTTTGGTTTCTGTGTTTGTGGTCACGGTTTATGGGATCAGTCTGCTGTAGTGGACTGATTTCAACATGTGGATATGGATTTGAATGAGTTTCCTAATGCTAGCGTGCTAATCTGCGGCTCCCGGCTGCTTTGGGTGTGAGATTAGCTCTGAACCAGAGGGCTAATGCTGTTATCTGTCTAACGGCTAACTgttaacctctctctctctctctccctttcttttCTCTTCAATGCTTGCAACGTTAGTCTCTGAGCCAATTTTACAGTCAGGTATAGTATACACAAACCGACCATAAATCCATAACTGTTTATGGTTCCCTGTTTCATAAAATCAGTGTTTATTTTGGCGCTGCTGACTCTGTGCTGTGTGTTTGTACTTCGTGTAGCCTTTTACTATGGTGTGTTGtcttgttttttatatttctatccaacttttaaggacaaaattctGTCTTTTTGTTGTCTCTCATAGTGGTTTGATTAATGTCATCAAGATCTAATATGTTCTAGA

Function

symbol description
synj1 Enables phosphatidylinositol phosphate 4-phosphatase activity and phosphatidylinositol phosphate 5-phosphatase activity. Acts upstream of or within several processes, including detection of visible light; retinal cone cell development; and vesicle cytoskeletal trafficking. Is expressed in brain; hair cell; inner ear; and retina. Human ortholog(s) of this gene implicated in Parkinson's disease; Parkinson's disease 20; and developmental and epileptic encephalopathy 53. Orthologous to human SYNJ1 (synaptojanin 1).

GO:

id name namespace
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0046549 retinal cone cell development biological_process
GO:0046855 inositol phosphate dephosphorylation biological_process
GO:0046856 phosphatidylinositol dephosphorylation biological_process
GO:0009584 detection of visible light biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0099518 vesicle cytoskeletal trafficking biological_process
GO:0050808 synapse organization biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0017124 SH3 domain binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0042578 phosphoric ester hydrolase activity molecular_function
GO:0034595 phosphatidylinositol phosphate 5-phosphatase activity molecular_function
GO:0034596 phosphatidylinositol phosphate 4-phosphatase activity molecular_function
GO:0004439 phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9180 Enables phosphatidylinositol phosphate 4-phosphatase activity and phosphatidylinositol phosphate 5-phosphatase activity. Acts upstream of or within several processes, including detection of visible light; retinal cone cell development; and vesicle cytoskeletal trafficking. Is expressed in brain; hair cell; inner ear; and retina. Human ortholog(s) of this gene implicated in Parkinson's disease; Parkinson's disease 20; and developmental and epileptic encephalopathy 53. Orthologous to human SYNJ1 (synaptojanin 1).

Ensembl:

ensembl_id ENSDARG00000025011

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004171 False 7800 mRNA 0.46 30 26515946 26569350
TCONS_00004172 True 759 lncRNA 0.39 2 26531877 26538637

Neighbor

gene id symbol gene type direction distance location
XLOC_002162 BX530069.2 coding upstream 209603 26306229 ~ 26306343 (+)
XLOC_002161 NA coding upstream 242798 26269060 ~ 26273148 (+)
XLOC_002160 trim47 coding upstream 387767 26118122 ~ 26128179 (+)
XLOC_002159 frem2a coding upstream 399310 25982212 ~ 26116636 (+)
XLOC_002158 BX530083.1 coding upstream 551547 25964284 ~ 25964399 (+)
XLOC_002165 slc9a6b coding downstream 1824 26571174 ~ 26597800 (+)
XLOC_002166 fhl1b coding downstream 28640 26597990 ~ 26621189 (+)
XLOC_002167 NA coding downstream 59443 26628793 ~ 26629282 (+)
XLOC_002168 adgrg4b coding downstream 65122 26634472 ~ 26637493 (+)
XLOC_002169 adgrg4b coding downstream 76603 26645953 ~ 26652593 (+)
XLOC_002156 NA non-coding upstream 750375 25762203 ~ 25765571 (+)
XLOC_002154 NA non-coding upstream 813539 25687634 ~ 25702407 (+)
XLOC_002174 CR545465.1 non-coding downstream 197035 26766385 ~ 26771677 (+)
XLOC_002175 NA non-coding downstream 217019 26786369 ~ 26786785 (+)
XLOC_002181 NA non-coding downstream 313352 26882702 ~ 26883139 (+)
XLOC_002190 NA non-coding downstream 492411 27061761 ~ 27064405 (+)

Expression


Co-expression Network