XLOC_002165 (slc9a6b)


Basic Information

Item Value
gene id XLOC_002165
gene name slc9a6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 26571174 ~ 26597800 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004173
CCGCACACACGGAGCCGTGATGGGGTGTCAGCGGCGCCGCTCCCCGGCCTCTGGAGCCCGTCTGCTGCCGCGTCTGCTCTGCCTGATGTGCTTCTCGGTGGTTATTCTGGCAGAGAACACGGAGATGGTGAATGTAGTGACGGAGAGGAAGGCGGAGGAGAGTCACCGGCAGGACAGCGCCAATCTGCTTATCTTTATCACGCTGCTCACCATCACCATCCTCACCATCTGGCTCTTCAAACACCGCCGCTTCAGGTTCCTGCACGAGACCGGCTTGGCCATGATTTATGGTTTGTTTGTGGGCGTGATTCTGCGATTTGGTGTCCATTCGCTACAGGACACGAGCGAAGTCACTCTGAGTTGTGCAGTGAACAGCAGTCCCACCACAATCCTGGTGAACGTAAGCGGCCGATTCTACGAGTACAGCCTGAAAGGAGAGGTGCAGGACAGCAAGGGCCACGATGTGCCCAATGCAGAGATGCTCAGGAAGGTTACTTTTGATCCTGAGGTTTTCTTCAACATTTTGCTTCCACCCATCATCTTTCATGCAGGATACAGTCTAAAGCGAAGGCATTTTTTCAGAAATTTGGGCTCCATCCTCTCCTACGCCTTTGTGGGCACAATGACATCATGCTTTGTTACAGGGTTGGCGATGTACAGCTGTGTGGTGTTCATGAAAATCATCGGTCAGCTTGGAGGAGATTTCTTTTTCACCGACTGCCTTTTCTTCGGTGCTATTGTATCTGCTACAGATCCAGTGACTGTTCTGGCCATTTTCAATGAGCTGAAAGTTGATGTGGATCTCTACGCACTCATGTTCGGTGAAAGCGTCCTGAATGATGCTGTGGCTATCGTCCTGTCATCATCAATAGTGGCGTACCAGCCTGAAGGAGACAACAGACACACATTTGATGCCAGCGCCCTGCTCAAGTGTCTGGGTGTTTTTCTGGGAGTTTTCAGTGGCTCTTTTGCAATGGGGGCTGCAACTGGAGTCATGACAGCTCTGGTCACAAAGTTCACCAAACTGAGAGATTTCCCATTGCTGGAAACGGCCCTGTTCTTCCTCATGTCCTGGAGTACCTTCCTATTAGCCGAGGCCTGCGGTTTCACAGGTGTGGTGGCAGTGCTCTTCTGCGGCATTACTCAGGCTCATTATACATACAATAACCTTTCAGTCGAATCAAAGAGCAGAACCAAACAGTTGTTTGAGCTGCTGAATTTCCTGGCTGAAAACTTCATCTTCTCCTACATGGGCTTAACACTCTTCTCCTTCCAGCACCACGTCTTCAATCCCTTCTTCATCATAGGCGCTTTTGTGGCCATATTTCTTGGTAGGCTGGCTAATATTTACCCCTTGTCTTTCCTGTTAAACCTGGGCCGCAAGAACAAAATCCCATCTAACTTTCAGCATGTCATGATGTTTTCAGGACTCAGAGGAGCAATGACGTTTGCGCTCTCAATACGGGACACTGCGACGTACGCCAGACAGATGATGTTTTCCACCACACTACTGATCGTGTTCTTCACTGTGTGGGTCTGCGGTGGTGGAACGACCCCCGTGCTGTCGCTTATGCAGATTCGAGTGGGAGTGGACACAGAACAAGATAATTCGGCTACAGCGGCGGACGGGATGACACAGAGAAGTACCAAGCATGAGAGCGCCTGGCCTTTCAGACTGTGGTACACTTTTGACCACAA
>TCONS_00004174
ATGGGGTGTCAGCGGCGCCGCTCCCCGGCCTCTGGAGCCCGTCTGCTGCCGCGTCTGCTCTGCCTGATGTGCTTCTCGGTGGTTATTCTGGCAGAGAACACGGAGATGGTGAATGTAGTGACGGAGAGGAAGGCGGAGGAGAGTCACCGGCAGGACAGCGCCAATCTGCTTATCTTTATCACGCTGCTCACCATCACCATCCTCACCATCTGGCTCTTCAAACACCGCCGCTTCAGGTTCCTGCACGAGACCGGCTTGGCCATGATTTATGGTTTGTTTGTGGGCGTGATTCTGCGATTTGGTGTCCATTCGCTACAGGACACGAGCGAAGTCACTCTGAGTTGTGCAGTGAACAGCAGTCCCACCACAATCCTGGTGAACGTAAGCGGCCGATTCTACGAGTACAGCCTGAAAGGAGAGGTGCAGGACAGCAAGGGCCACGATGTGCCCAATGCAGAGATGCTCAGGAAGGTTACTTTTGATCCTGAGGTTTTCTTCAACATTTTGCTTCCACCCATCATCTTTCATGCAGGATACAGTCTAAAGCGAAGGCATTTTTTCAGAAATTTGGGCTCCATCCTCTCCTACGCCTTTGTGGGCACAATGACATCATGCTTTGTTACAGGGTTGGCGATGTACAGCTGTGTGGTGTTCATGAAAATCATCGGTCAGCTTGGAGGAGATTTCTTTTTCACCGACTGCCTTTTCTTCGGTGCTATTGTATCTGCTACAGATCCAGTGACTGTTCTGGCCATTTTCAATGAGCTGAAAGTTGATGTGGATCTCTACGCACTCATGTTCGGTGAAAGCGTCCTGAATGATGCTGTGGCTATCGTCCTGTCATCATCAATAGTGGCGTACCAGCCTGAAGGAGACAACAGACACACATTTGATGCCAGCGCCCTGCTCAAGTGTCTGGGTGTTTTTCTGGGAGTTTTCAGTGGCTCTTTTGCAATGGGGGCTGCAACTGGAGTCATGACAGCTCTGGTCACAAAGTTCACCAAACTGAGAGATTTCCCATTGCTGGAAACGGCCCTGTTCTTCCTCATGTCCTGGAGTACCTTCCTATTAGCCGAGGCCTGCGGTTTCACAGGTGTGGTGGCAGTGCTCTTCTGCGGCATTACTCAGGCTCATTATACATACAATAACCTTTCAGTCGAATCAAAGAGCAGAACCAAACAGTTGTTTGAGCTGCTGAATTTCCTGGCTGAAAACTTCATCTTCTCCTACATGGGCTTAACACTCTTCTCCTTCCAGCACCACGTCTTCAATCCCTTCTTCATCATAGGCGCTTTTGTGGCCATATTTCTTGGTAGGCTGGCTAATATTTACCCCTTGTCTTTCCTGTTAAACCTGGGCCGCAAGAACAAAATCCCATCTAACTTTCAGCATGTCATGATGTTTTCAGGACTCAGAGGAGCAATGACGTTTGCGCTCTCAATACGGGACACTGCGACGTACGCCAGACAGATGATGTTTTCCACCACACTACTGATCGTGTTCTTCACTGTGTGGGTCTGCGGTGGTGGAACGACCCCCGTGCTGTCGCTTATGCAGATTCGAGTGGGAGTGGACACAGAACAAGATAATTCGGCTACAGCGGCGGACGGGATGACACAGAGAAGTACCAAGCATGAGAGCGCCTGGCCTTTCAGACTGTGGTACACTTTTGACCACAATTATTTAAAACCCTTCCTCACTCACAGCGGGCCTCCTCTCACAACCACTCTTCCAGCCTGCTGTGGACCAATCGCACGCTGTTTAACCAGCTCACAGGCCTATGAGAACGCCGGTCAGCTGCATGACGAGGACACAGAGCTGATTCTGAATGACGGCGGTGGTTTGATGTACAGTGACATGACAGTCAGCACGGATGTCCATGGCGTTCCCACCACCTCCTCCAGTCAGGCCGGCCTGTACTCTCTCGCGGGTACCTCCGATGACCCTCTGGAACGGGAGCTGGCTTTCGGAGGCACCCGTCTGGTGCTGCCTACAGATGAGCCTCTAGACCCTCTGACCTCatttcctcctcctccaccatcGCCACCCCTGTCAGACCCTCTGCGCCACAGAGTCTGAGCCTGCCAGACCTCCTGCCCTCTGTCGCAGATATTAAGTTATAcgattatttatgcttttattgatttattacttTGTGCCATGTACACTGCTGTTTAAAAGTCTGGGGTcggtatgatttttaaaagacgTGCTTTTATTGTGTTTCCgagggctgcatttatttgatcataattttaaaatatttattacattattattattgatttaaatattatcacaatttaaaataactgttaaaaAGTAAACTTATTATTGAAATAGTTGAAAGGTAACTGTATTTtacatcaaataaatgcagtcttcgTGCCAAgaatacactttttttaaaagacatttttaaagtcaTCTTGATCTCAACCttttgaatgattgtgtatggttatttatttatttatttatttgtctagaCACTGTTGTACTATGGTTGTGGTGGGTAATCCTAATTTTCACCTAATAATTTCTTCaaagtaaattatatattataggcctatatataataattcaatgtGCCACTAAAAATTCTAAGTAAATTTTGTGTTCAAGTAGTGTAGTCCAGACTGAACATCTGCATCTGTTGCGAATGCAGCGATGTGTCTGGATTGATCATTTCAAGTCATAACTTGTGGATAAACCTCTATGAATAAGTGCCTATGTCCAGTTTCCTGGTGTTTGTACTGTGCTGATTCATCATTACCTCATTAACATTTAACTTAGAGGAAGAGATTTCATACTTGGGAAAAGAAGTGACTCATTTTTTGAAAGTGTTTTGTTACTGTTCCACACCTATTGACCCTCTAATAAATGAGACTTGATGTATTTTTTAAGCCAGTCTTGACAATTATTTCCTAATATATTGACTACACTTTTAGTATATTGACTACACCATTGATGTCACATTTTTACACGAAAGTATTTTGCATCAGTGGGGCATATCCAgcatttttatatcccaatgttggcAGGTATAGTTTAATCGCTTGCTTTTCTGATACTCAAAGCCTACTCTAACATGCATTAAGCAgatttattttctaatttaaatatgtaaatctaattcatgtatttaaaatacaggttaattttcagatttcaaaggTATACAACTAGGTCATGTATAGATGcatcatatatttcaaaatttatcaaatagAGTTTATATGTCAATATGATGATATATAGCTTATATTTATGTGGTCCAAAaatatttccaggttttgatgaatataatactttacatttaggtacagcagttttctttttattttttgagaacaGTGCcgtttttaattcaattttaaaaactcattttaattcatattatattttttcctgtTAGCACAGTGCAGTGTTAGTGTTCAagctatttataatgtttaaagtggctgacaataataaatattcataataagaaGAATTATCTGCCAAGTTTTTGAAGTGTGCAACTCTATTTCAAAaccggtcattatggtggtacttggagagacatttttttctgtggtggtacttggtgaaaaaagtttgagaaccactgctctacatGATGACGCAAAAACTACTTTAAACGCGTAAATAATGTCTTATGGAAATATTCAAACCTTTGTGACTTACTTTTAAGCCTCCTGTCCCGCAT

Function

symbol description
slc9a6b Predicted to enable potassium:proton antiporter activity and sodium:proton antiporter activity. Predicted to be involved in potassium ion transmembrane transport; regulation of intracellular pH; and sodium ion import across plasma membrane. Predicted to act upstream of or within regulation of pH; sodium ion transport; and transmembrane transport. Predicted to be located in endosome membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane and recycling endosome. Is expressed in brain and gill. Human ortholog(s) of this gene implicated in Christianson syndrome. Orthologous to human SLC9A6 (solute carrier family 9 member A6).

GO:

id name namespace
GO:0006885 regulation of pH biological_process
GO:0071805 potassium ion transmembrane transport biological_process
GO:0051453 regulation of intracellular pH biological_process
GO:0055085 transmembrane transport biological_process
GO:0098719 sodium ion import across plasma membrane biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0055037 recycling endosome cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015297 antiporter activity molecular_function
GO:0015299 solute molecular_function
GO:0015385 sodium molecular_function
GO:0015386 potassium molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080226-2 Predicted to enable potassium:proton antiporter activity and sodium:proton antiporter activity. Predicted to be involved in potassium ion transmembrane transport; regulation of intracellular pH; and sodium ion import across plasma membrane. Predicted to act upstream of or within regulation of pH; sodium ion transport; and transmembrane transport. Predicted to be located in endosome membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane and recycling endosome. Is expressed in brain and gill. Human ortholog(s) of this gene implicated in Christianson syndrome. Orthologous to human SLC9A6 (solute carrier family 9 member A6).

Ensembl:

ensembl_id ENSDARG00000075382

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004173 False 1698 mRNA 0.51 14 26571174 26589086
TCONS_00004174 True 3712 mRNA 0.42 16 26571193 26597800

Neighbor

gene id symbol gene type direction distance location
XLOC_002163 synj1 coding upstream 1824 26515946 ~ 26569350 (+)
XLOC_002164 NA coding upstream 6653 26564221 ~ 26564521 (+)
XLOC_002162 BX530069.2 coding upstream 264831 26306229 ~ 26306343 (+)
XLOC_002161 NA coding upstream 298026 26269060 ~ 26273148 (+)
XLOC_002160 trim47 coding upstream 442995 26118122 ~ 26128179 (+)
XLOC_002166 fhl1b coding downstream 190 26597990 ~ 26621189 (+)
XLOC_002167 NA coding downstream 30993 26628793 ~ 26629282 (+)
XLOC_002168 adgrg4b coding downstream 36672 26634472 ~ 26637493 (+)
XLOC_002169 adgrg4b coding downstream 48153 26645953 ~ 26652593 (+)
XLOC_002170 htatsf1 coding downstream 55059 26652859 ~ 26667243 (+)
XLOC_002158 BX530083.1 non-coding upstream 606775 25964284 ~ 25964399 (+)
XLOC_002156 NA non-coding upstream 805603 25762203 ~ 25765571 (+)
XLOC_002174 CR545465.1 non-coding downstream 168585 26766385 ~ 26771677 (+)
XLOC_002175 NA non-coding downstream 188569 26786369 ~ 26786785 (+)
XLOC_002181 NA non-coding downstream 284902 26882702 ~ 26883139 (+)
XLOC_002190 NA non-coding downstream 463961 27061761 ~ 27064405 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_12340979_12347664 SLC9A6B coding CI01000304 null 12339847 ~ 12347890 (+)
bowfin (Amia calva) AMCG00014299 slc9a7,LOC107673530 coding CM030128.1 CM030128.1 8204822 ~ 8250935 (+)