tgfbr2l (LOC106586454)


Basic Information

Item Value
gene id tgfbr2l
gene name LOC106586454
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 60634539 ~ 60654313 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597524.2
AACATCTGGATCCGCCTACACGGAACTCCAGCCAAAAGCCCCGAGCCCAACCAGTTGTTTCACTGAATACGACTTCAATAAGCTAAATGAACGTCTATCTTACTACTCACGTTCCCAAATACATAGTCAAATACAGTGCGACCACGAAGTTTTAATCaggttattttttaaatgtcaataTTATGGGGTGCTGGAGATTCTCGGCAGTGAATATTGTTCTTCTGTCTTTCTGTCTTCCTATCCTCTCCTTCACACACATCAAGACCAACCTGTGTAAGTGGTGTGACTACTCCAGCCCTATCTGtgaggacagtgtgtgttataccaactgctccctctcctccttctgtaCTCTGAGTGAAGAGATTTGCATTGCAATATGGCGGAAGGACAATGAGAGTATGAGTGTGAAGACGTTATGCCACCAGCCCCAGCAGCCACTGGAGAATATCATGTTGTCAAACTACTCCTCCAACGAGTGTGTGATGGCTCCTCAGCCCTCTGAGGATGGGGTCCTGTTCGTTTGTGGCTGCCTGGGAGAACACGAGTGCAACGATAAGCTTATATTTGACAAGGGCTCCAATGATTTTTCCAAGCTCAAGAGTAAAGATGTGATTCCAGTGGTGGTGATCAGCCTGGTCCCTCCCTGTTTAGTGGCTATCATCGCTACCATGGCTTTCTACCTGTACCGTACCAGACAGCCCGGCAAGCAGCCCAAAGACTGGGCTCCCAAACGCACACACTACCAGGCCTTGGACATCCCAGAGGGACTCAGTGGGGAGGCCATCACCGGCGGTGAAGACTGCCATGGCAAGCTGTCAGCCATCAATAGTGACGCTACATCTGACATGTCTCCCGTCCGGGCCCATAACTTCAACCACAGCACGGAGCAGCTACCCATCCAGCTAGAAGCCTTGGTGGGGAAAGGGAGGTTTGCTGAGGTGTGGCGGGCCAGGCTCCACCACCAGGCAGCTGCTCCTCAGTATGAGACGGTGGCAGTGAAGATCTTCCCGTCTGTGGAGTATGTGTCCTGGAGCAACGAGAGGGCCATCTTCTCTGACGCCAACCTGGAGCATGAAAATGTGGTTCAATTCCTGACAGCAGAGGAGCGAGGGCCCTCCGGCTCCCCTCAGAGGCAGTACTGGCTGGTCATGGCCTACCACGGCCTGGGAAACCTACAGgacttcctggcgggccatGTGTTGAGCTGGGCTGAGCTGTGTGCTATGGCTGGGTCGGTGGCTCGAGGATTGGCCCACCTCCACAGTGACACCACCCCTTGTGGGATCTCCAAGGTGCCGGTGGCCCACCGTGATCTGAAGAGCAGCAACATTGTGGTGAAGAGCCGGAGAGAGTGTGCCCTCTGTGACTTTGGTCTGGCTCTGAGACTGGACCTCTCCCTCACCGTGGATGACTTTGCCAACAGTGGCCAGGTGGGTACAGCTCGCTACATGGCCCCTGAGGTGTTGGAGTCCAGAGTGAATCTGGAGGATCTGGAGGCCTTTAAACAGATGGATGTCTACTCCATGGCCCTGGTCCTCTGGGAAATGGTGTCCCGCTGTGAAGTCATAGGAGAGGTTAAGAGTTACGAGCCACCGTTTGGCTCTAAGGTGTGTGACCAGCCGTGTGTGGACAGCATGAGGGACCTGGTCCTGAGGGACAGAGGCAGACCTGAGATACCCACCAGCTGGACAACACATCAGGGGATGAATCTGCTGTGTGCCACCATCACTGAGTGTTGGGACCATGACCCAGAGGCCAGGCTCACAGCCCACTGTGTGGTGGAGCGCTTTGGAAGTCTAGAAGAGGAGATGGAGCAGGGAGTGTTAGACGCTGTCAACAGCCAGGAGTGTCCTCCCTCTGACACCTTCCCTGACTCCACCGGCTGTGATGTGGACCCTCTGACCCCTGAAACAGATACAGAGGGGACCCTCATCCCTGGGCAGATAAGTGAGATATTATAAGGAGGACTTAAACTTCATCACCAAAAAGAGACATCTTTGTATGATAGATTGAAGGCACTCTACCCTATGAACAAAGAGGAAAACATATTTTTTCTATGATAGATTGTATCCTTTGAAGGAGCTGGTCTCCGGATTGATTTGTAATATAACCTTTATGAAGTGTCTTATGAATGCACGTATGAACTTTTGCCACTGAAGAGATATTCTTTCTGCCCCTTGGAAAGTTGTGTGTACAGGATTCAGGGAACAGAGCAAACAAGAAGACCACAAATCATTATCCCAACTTCACTATCACACTGCAACATGTACATTTGACCAATAACTCAAAAAGCAGATTAGTTTCCAAATCTGAAGTACATACATCCTATAATGAATGATCACATGGATCTGTTCTAaatgcaggttgacgtttattttcacgaatcttgtcctggaggcagaactgagctaTTTCCGCTTAGATAGGCTAGCTGCAAAGAAAAAAAGGGCTAttattgtaaaaattcatgaaaacaatgtttttattttggcCTTcgttttaggttagggttaggcataagggttagcagtgtggttaagattagatttaaaatcagattttatgactttgtggctgtgccagctagtgaccactctgcagagctgcctccagaacaggGTTCATGATAGAAAAATGCAAATTGCACTTAAAATGGAACCTTATTCCCTACagattgcactacttttgaccagattccTATGGctctgcactatatagggaaataggatgccatttgggacgtacaaCTGTTTATTATTTGCTAAAGTATAGAGAGCACTACATTTTGACAACCTTCATTGGTGTACCAGCTATTTAAATTGGAGATCATTTACTTTACAATAATTATTACTTATGATTAAttatcatttattttttaaaattagtTTTCCATTGCCTTCTCAGTGTGTAGCCTCAAACAGTGGTGTGGTTCTCATTCCCCTTAATATATCCTAAATGGCTCCCTATGTCCTACATactgtggtgcactacttttaaccagttAGCGCAGAGCTGAGAGGTTTGCATTTTTCTAAGGGTTTCATTCTGATTAACCACAAGATGCTCTGACTACAAATGGTGAATGCTGTTATATAGGCTAGAGACCACAACACAAGCTAACAGGGTGAAATGCCTTTTTTTAAGATGAATGAGAACCAAGGAGCTTTTAATGATCATTTGAACTGATAGCTGTACAAAAGGACTTTCTAAGGATACTTTGATCCGTTTGTAGCCATTGCATACAACTACATTGTTTTTCCCCACCATGTGAAGTACTTGCTGCCTTCATCTGTTTACTAAGACACATAGTTAATTTGTTGAAATCAAATCTGATGTCTGAACATTATTAAGAGGGCATGATCTATCTTTATATACTATGCATCAGAGAACTCACAGTAAGAGCGACTGCTCTCCCAGACAGCCTGGTATTACACTCAGATCTACACCAATTCAATCATTCACTGACTCTTTTGCTTCAAAGGTAATGTTAAAATATTTTATCACACTAACCGAGCGGACTAAAATAATTAAAACAGGAGTTGGTGTAGATTTGATTACGCCATTAAGAAGATCAATAGCTTTTTCTCATAGAACCAATCAATGGCTGGGAAAGAAGCACTGTCTAATTGTGAGAGGCATGGCAGTGACATCCTCTTTGAATCATGAGCTGGGTCGTGTTAGATTGgcacaaatggaagaaaacaaggTGAAATGTAAAAGTACTCCCTTAGCCTTTATTGGACAaggctatttttttatttatttccgtTGCTACggcgtgccctaatgaacacaaccaagGTTAACCCTCTTCCCTTGGGAATGGTCAAGTTTGAGGATGCACAGAGTAAGACCATGGCCTTAACTATGGAGAAATGTCTAAGTATGATATTAATGAACTATGCAGAAGACTAAAGAATGGTGTTATTGAACTTCTGATGAATGACCACAGATAAAAACAAAATTATTGTGAACTGGTTCCACAACATGTTACCTATTTGTCTTGTAAAATAGGTTATGTATCAGGTCTCTTATTTTGTTACTATTTGTGAGGGGGGAAAAACCCACCACAAAACTGTCATAAAAAGACACATGAAAAAGAACGTCAAGCAGCTTTATTGGTTTGTTGTTCCAGAACCCTTATTTTAAGAGGTTGACATTATACGTGTCACAATATTTCAGTAAGAAGCACAGATTTAGGCCCGGATTCAATCTGATTGAGCTTTGTCAGTATGtgccatttaaaggtaatttccaattgagccaACATATGCAAATTAGGTCTCCACAAAGGCAGGAACAATGTAattttttttctgttttaattttacccctttttctccccaattttcgtggtatccaattgtttagtagctactatcttgtctcatcgctacaactcccgtacgggctcgggagagacgaaggttg

Function

NR:

description
PREDICTED: TGF-beta receptor type-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597524.2 True 4434 mRNA 0.45 10 60634539 60654313

Neighbor

gene id symbol gene type direction distance location
LOC118964303 NA coding upstream 251187 60382674 ~ 60383352 (+)
myl1 LOC100135947 coding upstream 348459 60277245 ~ 60286080 (+)
LOC110505381 NA coding upstream 364640 60267642 ~ 60269899 (+)
erbb4b LOC106586446 coding upstream 582245 59870559 ~ 60052294 (+)
ikzf2 LOC106586445 coding upstream 1052583 59556678 ~ 59581956 (+)
LOC110520315 ube2e3 coding downstream 677046 61331359 ~ 61370875 (+)
LOC110520316 itga4 coding downstream 821563 61475876 ~ 61505428 (+)
LOC110504376 LOC106586465 coding downstream 935745 61590058 ~ 61647253 (+)
LOC110520321 LOC106586467 coding downstream 994392 61648705 ~ 61663408 (+)
LOC110520324 LOC106586470 coding downstream 1119120 61773433 ~ 61832413 (+)
G281538 NA non-coding upstream 160 60634084 ~ 60634379 (+)
G281492 snx4 non-coding upstream 12906 60619072 ~ 60621633 (+)
G281525 NA non-coding upstream 18725 60615592 ~ 60615814 (+)
G281517 NA non-coding upstream 28247 60605699 ~ 60606292 (+)
G281515 NA non-coding upstream 31250 60603003 ~ 60603289 (+)
G281579 LOC106586456 non-coding downstream 69269 60723582 ~ 60727146 (+)
G281680 NA non-coding downstream 194869 60849182 ~ 60923455 (+)
G281754 NA non-coding downstream 298827 60953140 ~ 60955335 (+)
G281957 NA non-coding downstream 312015 60966328 ~ 60966638 (+)
G281958 LOC105896813 non-coding downstream 313256 60967569 ~ 61023059 (+)
G281141 NA other upstream 343972 60287388 ~ 60303967 (+)
G280315 NA other upstream 580122 60052716 ~ 60054417 (+)
G277973 NA other upstream 2844207 57789734 ~ 57790332 (+)
G277296 NA other upstream 3369647 57264567 ~ 57264892 (+)
G275553 LOC107595854 other upstream 4718406 55915329 ~ 55916133 (+)
G281591 LOC106586456 other downstream 85926 60740239 ~ 60757350 (+)
G281714 NA other downstream 237211 60891524 ~ 60893778 (+)
G281996 NA other downstream 379453 61033766 ~ 61037105 (+)
G282707 il-1rii other downstream 1303075 61957388 ~ 61964066 (+)
LOC110520339 lrrc63 other downstream 1539291 62193287 ~ 62200069 (+)

Expression


Co-expression Network