LOC110520325 (LOC106586471)


Basic Information

Item Value
gene id LOC110520325
gene name LOC106586471
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 61836665 ~ 61841206 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597566.2
TTGAtccgccagttgcccatcccagAACTAGTTTAATGTACATATTTTTCAAAGAAGGCTATGGGGCAAGTTCTCCAGTCCTGCTTGGTGTTGGCTTGAATCAGGAGTAGGAGGGTCAGACAGGCATGATGATGATAGAGGAAATTTGTAAAGGGTAAAAAAGCTGGTCCCGCAGACTGAGGTCAGTCCGATTCCAACGAGCAATCACTGCAGTGCTAACTAGTCTGggaaggaggagatagagagagcggaGCCACAAGCCCACCCGCAATATGATCACACACGCGCCAATGGAATAAGCAACAAAACAGTTGGAAATCGAAATCAATCTTCACCGTCCACGAGGAATTCGATATCAAATAGGTTATTTTGGTTTTACGCACAAAAGATGACGTTTGAACCTCTTTCCTTTTACGTGACGCAAAGTTTAGACACGTCCGGGTAGACAGACAACTTTAGGCTAGCTATATATTTTAGGATTTCATTACGCGTTTAAGTTTATCCATTCCGACTTCATAACCAGACATTGCATTTAGATTTATTGTTTATCCTAAACCAACTGTCAGCATATAACTGAGGATGATCATGTTTTCCCACGAGTTATTCGTCTCTTTCCTCGCGGTTACCTGTCTGTTTAGTATACCCAGAGCGTCTTCGGCGGCATGTGAGCCCATTCGGATCCCTCTGTGCAAGTCCATGCCCTGGAACATGACGAAAATGCCCAACCACCTCCACCACAGCACCCAGGCGAACGCAGTCCTGGCCATTGAGCAGTTTGAAGGGCTTCTTGGCACCCAGTGTAGTACAGATTTACTGTTCTTTCTGTGCGCCATGTACGCCCCAATATGCACGATTGACTTCCAACACGACCCTATCAAGCCCTGCAAGTCGGTGTGTGAGCGTGCGAAATGCGGCTGTGAACCTGTGATGAAACGGTATAATCACACCTGGCCAGAGAGCTTGGCCTGCGAGGATCTGCCAGTCTACGACCGGGGAGTCTGTATCTCACCTGAGGCCATTGTAAAAGCAGAAGGACCAGACAACCCTTACTATCAGGACCCCACAAAATGCTCATCTGAATCAACTCCTGACTTTCCAAGTGATTCTCACAATGTCAACTGTAAAGGAGCCAACAATGATCGTTGCAAGTGCAAGTCAGTTAAACTGGGTCTCAAGACCTACCTAAAGAATAATTACAACTATGTGATTCGTGCAAGGGTGAAGGAGATTAAAAACAGGAATCATGACTTGACTGCAATCGTGGAGGTCAAAGACATCCTGAAGTCTTCCTTTGTTAACATCCCTCGTGATACCGTCACACTGCACTACAACTCTGGCTgtccctgtcctcctctcaccGCCAACGACGAGTACATCATCATGGGTTATGAGAATGAGGAGAGGTCCAGGCTTCTGCTCATCGAAGGCTCCATTGCACAGAAGTGGAAGGACCGTATGGGGAGGAAGGTGAGGCGTTGGGACCAGGTACTGAGGGACCAGAGCCGGGGGAACTCTGGCAGAAGCAATATGCGGCGGACCCACCACTGATCATCTAAGGCGTGTCCCTGTGCAGTGATgacagggttgcaaaattcctctAACTTCCCAGGTTTTC
>XM_021597567.2
TGAtccgccagttgcccatcccagAACTAGTTTAATGTACATATTTTTCAAAGAAGGCTATGGGGCAAGTTCTCCAGTCCTGCTTGGTGTTGGCTTGAATCAGGAGTAGGAGGGTCAGACAGGCATGATGATGATAGAGGAAATTTGTAAAGGGTAAAAAAGCTGGTCCCGCAGACTGAGGTCAGTCCGATTCCAACGAGCAATCACTGCAGTGCTAACTAGTCTGggaaggaggagatagagagagcggaGCCACAAGCCCACCCGCAATATGATCACACACGCGCCAATGGAATAAGCAACAAAACAGTTGGAAATCGAAATCAATCTTCACCGTCCACGAGGAATTCGATATCAAATAGGTTATTTTGGTTTTACGCACAAAAGATGACGTTTGAACCTCTTTCCTTTTACGTGACGCAAAGTTTAGACACGTCCGGGTAGACAGACAACTTTAGGCTAGCTATATATTTTAGGATTTCATTACGCGTTTAAGTTTATCCATTCCGACTTCATAACCAGACATTGCATTTAGATTTATTGTTTATCCTAAACCAACTGTCAGCATATAACTGAGGATGATCATGTTTTCCCACGAGTTATTCGTCTCTTTCCTCGCGGTTACCTGTCTGTTTAGTATACCCAGAGCGTCTTCGGCGGCATGTGAGCCCATTCGGATCCCTCTGTGCAAGTCCATGCCCTGGAACATGACGAAAATGCCCAACCACCTCCACCACAGCACCCAGGCGAACGCAGTCCTGGCCATTGAGCAGTTTGAAGGGCTTCTTGGCACCCAGTGTAGTACAGATTTACTGTTCTTTCTGTGCGCCATGTACGCCCCAATATGCACGATTGACTTCCAACACGACCCTATCAAGCCCTGCAAGTCGGTGTGTGAGCGTGCGAAATGCGGCTGTGAACCTGTGATGAAACGGTATAATCACACCTGGCCAGAGAGCTTGGCCTGCGAGGATCTGCCAGTCTACGACCGGGGAGTCTGTATCTCACCTGAGGCCATTGTAAAAGCAGAAGGACCAGAATCAACTCCTGACTTTCCAAGTGATTCTCACAATGTCAACTGTAAAGGAGCCAACAATGATCGTTGCAAGTGCAAGTCAGTTAAACTGGGTCTCAAGACCTACCTAAAGAATAATTACAACTATGTGATTCGTGCAAGGGTGAAGGAGATTAAAAACAGGAATCATGACTTGACTGCAATCGTGGAGGTCAAAGACATCCTGAAGTCTTCCTTTGTTAACATCCCTCGTGATACCGTCACACTGCACTACAACTCTGGCTgtccctgtcctcctctcaccGCCAACGACGAGTACATCATCATGGGTTATGAGAATGAGGAGAGGTCCAGGCTTCTGCTCATCGAAGGCTCCATTGCACAGAAGTGGAAGGACCGTATGGGGAGGAAGGTGAGGCGTTGGGACCAGGTACTGAGGGACCAGAGCCGGGGGAACTCTGGCAGAAGCAATATGCGGCGGACCCACCACTGATCATCTAAGGCGTGTCCCTGTGCAGTGATgacagggttgcaaaattcctctAACTTCCCAGGTTTTC
>XM_021597568.2
TGAtccgccagttgcccatcccagAACTAGTTTAATGTACATATTTTTCAAAGAAGGCTATGGGGCAAGTTCTCCAGTCCTGCTTGGTGTTGGCTTGAATCAGGAGTAGGAGGGTCAGACAGGCATGATGATGATAGAGGAAATTTGTAAAGGGTAAAAAAGCTGGTCCCGCAGACTGAGGTCAGTCCGATTCCAACGAGCAATCACTGCAGTGCTAACTAGTCTGggaaggaggagatagagagagcggaGCCACAAGCCCACCCGCAATATGATCACACACGCGCCAATGGAATAAGCAACAAAACAGTTGGAAATCGAAATCAATCTTCACCGTCCACGAGGAATTCGATATCAAATAGGTTATTTTGGTTTTACGCACAAAAGATGACGTTTGAACCTCTTTCCTTTTACGTGACGCAAAGTTTAGACACGTCCGGGTAGACAGACAACTTTAGGCTAGCTATATATTTTAGGATTTCATTACGCGTTTAAGTTTATCCATTCCGACTTCATAACCAGACATTGCATTTAGATTTATTGTTTATCCTAAACCAACTGTCAGCATATAACTGAGGATGATCATGTTTTCCCACGAGTTATTCGTCTCTTTCCTCGCGGTTACCTGTCTGTTTAGTATACCCAGAGCGTCTTCGGCGGCATGTGAGCCCATTCGGATCCCTCTGTGCAAGTCCATGCCCTGGAACATGACGAAAATGCCCAACCACCTCCACCACAGCACCCAGGCGAACGCAGTCCTGGCCATTGAGCAGTTTGAAGGGCTTCTTGGCACCCAGTGTAGTACAGATTTACTGTTCTTTCTGTGCGCCATGTACGCCCCAATATGCACGATTGACTTCCAACACGACCCTATCAAGCCCTGCAAGTCGGTGTGTGAGCGTGCGAAATGCGGCTGTGAACCTGTGATGAAACGGTATAATCACACCTGGCCAGAGAGCTTGGCCTGCGAGGATCTGCCAGTCTACGACCGGGGAGTCTGTATCTCACCTGAGGCCATTGTAAAAGCAGAAGGACCAGATCGTTGCAAGTGCAAGTCAGTTAAACTGGGTCTCAAGACCTACCTAAAGAATAATTACAACTATGTGATTCGTGCAAGGGTGAAGGAGATTAAAAACAGGAATCATGACTTGACTGCAATCGTGGAGGTCAAAGACATCCTGAAGTCTTCCTTTGTTAACATCCCTCGTGATACCGTCACACTGCACTACAACTCTGGCTgtccctgtcctcctctcaccGCCAACGACGAGTACATCATCATGGGTTATGAGAATGAGGAGAGGTCCAGGCTTCTGCTCATCGAAGGCTCCATTGCACAGAAGTGGAAGGACCGTATGGGGAGGAAGGTGAGGCGTTGGGACCAGGTACTGAGGGACCAGAGCCGGGGGAACTCTGGCAGAAGCAATATGCGGCGGACCCACCACTGATCATCTAAGGCGTGTCCCTGTGCAGTGATgacagggttgcaaaattcctctAACTTCCCAGGTTTTC

Function

NR:

description
secreted frizzled-related protein 3-like isoform X3

GO:

id name namespace
GO:0008406 gonad development biological_process
GO:0060429 epithelium development biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0007409 axonogenesis biological_process
GO:0007420 brain development biological_process
GO:0001944 vasculature development biological_process
GO:0060056 mammary gland involution biological_process
GO:0009790 embryo development biological_process
GO:0032589 neuron projection membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030165 PDZ domain binding molecular_function
GO:0042813 Wnt-activated receptor activity molecular_function
GO:0017147 Wnt-protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597566.2 False 1615 mRNA 0.48 6 61836665 61841206
XM_021597567.2 False 1575 mRNA 0.48 5 61836666 61841206
XM_021597568.2 True 1515 mRNA 0.48 4 61836666 61841206

Neighbor

gene id symbol gene type direction distance location
LOC110520324 LOC106586470 coding upstream 4252 61773433 ~ 61832413 (+)
LOC110520321 LOC106586467 coding upstream 173257 61648705 ~ 61663408 (+)
LOC110504376 LOC106586465 coding upstream 189412 61590058 ~ 61647253 (+)
LOC110520316 itga4 coding upstream 331237 61475876 ~ 61505428 (+)
LOC110520315 ube2e3 coding upstream 465790 61331359 ~ 61370875 (+)
LOC110520332 LOC106586482 coding downstream 279993 62121199 ~ 62126483 (+)
LOC110520333 LOC106586480 coding downstream 287828 62129034 ~ 62156042 (+)
cnot11 LOC106586484 coding downstream 333379 62174585 ~ 62180282 (+)
LOC110520339 lrrc63 coding downstream 352081 62193287 ~ 62200069 (+)
LOC110520341 LOC106586488 coding downstream 359625 62200831 ~ 62203750 (+)
G282560 NA non-coding upstream 138282 61693535 ~ 61698383 (+)
G282538 NA non-coding upstream 182468 61653550 ~ 61654197 (+)
G282486 NA non-coding upstream 267532 61568709 ~ 61569133 (+)
G282484 NA non-coding upstream 271315 61564123 ~ 61565350 (+)
G282483 NA non-coding upstream 272933 61563464 ~ 61563732 (+)
G282634 NA non-coding downstream 607 61841813 ~ 61843829 (+)
G282658 NA non-coding downstream 4084 61845290 ~ 61849674 (+)
G282707 il-1rii non-coding downstream 116182 61957388 ~ 61964066 (+)
G282712 NA non-coding downstream 140865 61982071 ~ 61982481 (+)
G282725 NA non-coding downstream 161461 62002667 ~ 62003022 (+)
G281996 NA other upstream 799560 61033766 ~ 61037105 (+)
G281714 NA other upstream 942887 60891524 ~ 60893778 (+)
G281591 LOC106586456 other upstream 1079315 60740239 ~ 60757350 (+)
G281141 NA other upstream 1546098 60287388 ~ 60303967 (+)
G280315 NA other upstream 1782248 60052716 ~ 60054417 (+)
LOC110520346 htr2a other downstream 526408 62367489 ~ 62408857 (+)
LOC110504398 LOC106586506 other downstream 865125 62705451 ~ 62712740 (+)
G284313 NA other downstream 1175120 63016326 ~ 63022591 (+)

Expression


Co-expression Network