LOC110520332 (LOC106586482)


Basic Information

Item Value
gene id LOC110520332
gene name LOC106586482
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62121199 ~ 62126483 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021597580.2
GAGGGTCAAGTCATCCCAGACATTACACCCCTTTCTGTTTGTGCATTAATGTGTTTGCTTGAGTGTATTCTATTTTGTTTgtatgtcagtctgtgtgtgtggctgtgggaTGATTGTGGGGATGATTGCTGTCTCAAATGCTTTTGTGTGACGTGTGCTGTTTTACTAGTGTGGTGGTGATTGGGAAAGCATCTGATTGTTGATTGTAAGTTTCCATGAGGGAAACACAAGAAGacaaaatattcctccacaatgAATGTCATTCAAATAAAAAACTGAGGaaagatagacacacacacaaaacacacacaagggTGTCCATCATGTCTCTGGGTTGGCTGTAGTTGGTCCCTCAGTCCAGATGAAAGTGCTGGCAAATCCATACAATGGCTTATTAACAGTATAAATCTCCCCCACCTGTCTGTGAGGCTCGTCTCTAAAATGAACTGAAGAGTCCTTTCCAATATGGTTGATATAACATACAATCACTGCTCAGGGGACCTACAACAAAGACAAACATACAGTAAAGGCCTGTTCTAAATGTAATGATCAATATGTTGAGCTGAAGTGTAACTGCAAAAGCTCTTGTTTTTCTATTGGTTCCATCATAGAGCGAAGTGACTATAGGATTTCATAAGCATTCATAACCATGTTATATGCAACCATAACTACTAATTAACACAAACTGAACTGACCCAGAATAGAGACGTTATATGTTCGAGGGTGGGGGTCTGGGTCTCCCCCTTGAGTGTTCTACGCTATTTTCCATTCAAGGACCACCGGGCAGGTACAGCTAATCCACAGTCTCTCTGGAATATTGTTTCAGATTCATCCAGGAGAAACTCGATCCACTGACCCACACATTCAGCTTTCATGCTTACACAGGGAAACCGGGCCCCAGCAGTCACAATAACTCTCTGTAGTCAATCTAATGAAAAATACTAATTTATCAGTAAATGTACACAACACTGATAAATTGATGTAGTGAGATTAGAGGAGACAAATTATATGATAATAAATGTTGACATTTCAACTCTGTGTCACTTCCACAGGATCACAGAGTAAAAAGGTTGTTAACACAGTTAGGCCTACATAATACATTTATTTGGTAGCCTACTTCATGGTTTTGACTGACTGAACATGAGCATCATCTGGTCATCCAAAGATAATTTCCTTTAATCAAGTGCACTGGGAAAAAAATGGAGACCAATTTTATAACCTCCATTTTGATTTTATATTCAGTGGCATCCtgtttttgatgaatttattttatttagtttcCGATCTAAATGTATCTAAAAACCATTATCAAAATTGACTTACACAAGTTGTTATTGTCTGACAGGCAAGAGAGAGGACACCTGCGCTCTAAGACTCAGATGATGATCAAGGAGACCAGTGGGATGTTGATTGGTCACTTCTACGTGGGAGATGATGCTTCTCCCATCAAAGTTATAGCCTATATAATTCTCTCGGTTGAGAAAGTCATTAGTGTTGAGTTCTAGGACCTGATTTTGCGATATAACAAGACTTACTCCTGCAGCACCaaaccacacacagagaagctATACTCTCACCAAAGCGCATGAGAATCTGATTGCTCGAGATGAGCGCAACGTATCTGCGACAACTTTGCCTCCTTCATTTGGTCTGGTGCCTTGGATGTTGGAAGGTGACAGAAGCTAATCCCAGCAAAGAGTGTGAACATGGAATTGTTTTGACAAAGGGTCCTGGGATCCAGACTGATGTGGGAGATATGTGGAGAGATCAGAATGAGCAAGTTCAGAATGTATTCAAAAGATTCCTGTTCCACTATTCAAAGGCAAACTCAGTAGGCTCTATACAGCATGCGTCCCATTCAGTGCACCCATTGATGCGCCTGTCACCAAAACTGTCTCAGAGGAGAAAGAAGCAGCTCCTGCTTTTGGTAAGAATCCTGTACCTTTTAAACTTGAATGGTTAGCAGAATGTTTAGGAAACTGAAGAAGTTCCTTTGAGACAGGGTTATTCCCGATCAGCGATGCAGAGGACCA
>XM_036974864.1
CATCCCAGACATTACACCCCTTTCTGTTTGTGCATTAATGTGTTTGCTTGAGTGTATTCTATTTTGTTTgtatgtcagtctgtgtgtgtggctgtgggaTGATTGTGGGGATGATTGCTGTCTCAAATGCTTTTGTGTGACGTGTGCTGTTTTACTAGTGTGGTGGTGATTGGGAAAGCATCTGATTGTTGATTGTAAGTTTCCATGAGGGAAACACAAGAAGacaaaatattcctccacaatgAATGTCATTCAAATAAAAAACTGAGGaaagatagacacacacacaaaacacacacaagggTGTCCATCATGTCTCTGGGTTGGCTGTAGTTGGTCCCTCAGTCCAGATGAAAGTGCTGGCAAATCCATACAATGGCTTATTAACAGTATAAATCTCCCCCACCTGTCTGTGAGGCTCGTCTCTAAAATGAACTGAAGAGTCCTTTCCAATATGGTTGATATAACATACAATCACTGCTCAGGGGACCTACAACAAAGACAAACATACAGTAAAGGCCTGTTCTAAATGTAATGATCAATATGTTGAGCTGAAGTGTAACTGCAAAAGCTCTTGTTTTTCTATTGGTTCCATCATAGAGCGAAGTGACTATAGGATTTCATAAGCATTCATAACCATGTTATATGCAACCATAACTACTAATTAACACAAACTGAACTGACCCAGAATAGAGACGTTATATGTTCGAGGGTGGGGGTCTGGGTCTCCCCCTTGAGTGTTCTACGCTATTTTCCATTCAAGGACCACCGGGCAGGTACAGCTAATCCACAGTCTCTCTGGAATATTGTTTCAGATTCATCCAGGAGAAACTCGATCCACTGACCCACACATTCAGCTTTCATGCTTACACAGGGAAACCGGGCCCCAGCAGTCACAATAACTCTCTGTAGTCAATCTAATGAAAAATACTAATTTATCAGTAAATGTACACAACACTGATAAATTGATGTAGTGAGATTAGAGGAGACAAATTATATGATAATAAATGTTGACATTTCAACTCTGTGTCACTTCCACAGGATCACAGAGTAAAAAGGTTGTTAACACAGTTAGGCCTACATAATACATTTATTTGGTAGCCTACTTCATGGTTTTGACTGACTGAACATGAGCATCATCTGGTCATCCAAAGATAATTTCCTTTAATCAAGTGCACTGGGAAAAAAATGGAGACCAATTTTATAACCTCCATTTTGATTTTATATTCAGTGGCATCCtgtttttgatgaatttattttatttagtttcCGATCTAAATGTATCTAAAAACCATTATCAAAATTGACTTACACAAGTTGTTATTGTCTGACAGGCAAGAGAGAGGACACCTGCGCTCTAAGACTCAGATGATGATCAAGGAGACCAGTGGGATGTTGATTGGTCACTTCTACGTGGGAGATGATGCTTCTCCCATCAAAGTTATAGCCTATATAATTCTCTCGGTTGAGAAAGTCATTAGTGTTGAGTTCTAGGACCTGATTTTGCGATATAACAAGACTTACTCCTGCAGCACCaaaccacacacagagaagctATACTCTCACCAAAGCGCATGAGAATCTGATTGCTCGAGATGAGCGCAACGTATCTGCGACAACTTTGCCTCCTTCATTTGGTCTGGTGCCTTGGATGTTGGAAGGTGACAGAAGCTAATCCCAGCAAAGAGTGTGAACATGGAATTGTTTTGACAAAGGGTCCTGGGATCCAGACTGATGTGGGAGATATGTGGAGAGATCAGAATGAGCAGCAAGTTCAGAATGTATTCAAAAGATTCCTGTTCCACTATTCAAAGGCAAACTCAGTAGGCTCTATACAGCATGCGTCCCATTCAGTGCACCCATTGATGCGCCTGTCACCAAAACTGTCTCAGAGGAGAAAGAAGCAGCTCCTGCTTTTGGTAAGAATCCTGTACCTTTTAAACTTGAATGGTTAGCAGAATGTTTAGGAAACTGAAGAAGTTCCTTTGAGACAGGGTTATTCCCGATCAGCGATGCAGAGGACCA
>XM_021597579.2
ACATTACACCCCTTTCTGTTTGTGCATTAATGTGTTTGCTTGAGTGTATTCTATTTTGTTTgtatgtcagtctgtgtgtgtggctgtgggaTGATTGTGGGGATGATTGCTGTCTCAAATGCTTTTGTGTGACGTGTGCTGTTTTACTAGTGTGGTGGTGATTGGGAAAGCATCTGATTGTTGATTGTAAGTTTCCATGAGGGAAACACAAGAAGacaaaatattcctccacaatgAATGTCATTCAAATAAAAAACTGAGGaaagatagacacacacacaaaacacacacaagggTGTCCATCATGTCTCTGGGTTGGCTGTAGTTGGTCCCTCAGTCCAGATGAAAGTGCTGGCAAATCCATACAATGGCTTATTAACAGTATAAATCTCCCCCACCTGTCTGTGAGGCTCGTCTCTAAAATGAACTGAAGAGTCCTTTCCAATATGGTTGATATAACATACAATCACTGCTCAGGGGACCTACAACAAAGACAAACATACAGTAAAGGCCTGTTCTAAATGTAATGATCAATATGTTGAGCTGAAGTGTAACTGCAAAAGCTCTTGTTTTTCTATTGGTTCCATCATAGAGCGAAGTGACTATAGGATTTCATAAGCATTCATAACCATGTTATATGCAACCATAACTACTAATTAACACAAACTGAACTGACCCAGAATAGAGACGTTATATGTTCGAGGGTGGGGGTCTGGGTCTCCCCCTTGAGTGTTCTACGCTATTTTCCATTCAAGGACCACCGGGCAGGTACAGCTAATCCACAGTCTCTCTGGAATATTGTTTCAGATTCATCCAGGAGAAACTCGATCCACTGACCCACACATTCAGCTTTCATGCTTACACAGGGAAACCGGGCCCCAGCAGTCACAATAACTCTCTGTAGTCAATCTAATGAAAAATACTAATTTATCAGTAAATGTACACAACACTGATAAATTGATGTAGTGAGATTAGAGGAGACAAATTATATGATAATAAATGTTGACATTTCAACTCTGTGTCACTTCCACAGGATCACAGAGTAAAAAGGTTGTTAACACAGTTAGGCCTACATAATACATTTATTTGGTAGCCTACTTCATGGTTTTGACTGACTGAACATGAGCATCATCTGGTCATCCAAAGATAATTTCCTTTAATCAAGTGCACTGGGAAAAAAATGGAGACCAATTTTATAACCTCCATTTTGATTTTATATTCAGTGGCATCCtgtttttgatgaatttattttatttagtttcCGATCTAAATGTATCTAAAAACCATTATCAAAATTGACTTACACAAGTTGTTATTGTCTGACAGGCAAGAGAGAGGACACCTGCGCTCTAAGACTCAGATGATGATCAAGGAGACCAGTGGGATGTTGATTGGTCACTTCTACGTGGGAGATGATGCTTCTCCCATCAAAGTTATAGCCTATATAATTCTCTCGGTTGAGAAAGTCATTAGTGTTGAGTTCTAGGACCTGATTTTGCGATATAACAAGACTTACTCCTGCAGCACCaaaccacacacagagaagctATACTCTCACCAAAGCGCATGAGAATCTGATTGCTCGAGATGAGCGCAACGTATCTGCGACAACTTTGCCTCCTTCATTTGGTCTGGTGCCTTGGATGTTGGAAGGTGACAGAAGCTAATCCCAGCAAAGAGTGTGAACATGGAATTGTTTTGACAAAGGGTCCTGGGATCCAGACTGATGTGGGAGATATGTGGAGAGATCAGAATGAGCAGCAAGTTCAGAATGTATTCAAAAGATTCCTGTTCCACTATTCAAAGGCAAACTCAGTAGGCTCTATACAGCATGCGTCCCATTCAGTGCACCCATTGATGCGCCTGTCACCAAAACTGTCTCAGAGGAGAAAGAAGCAGCTCCTGCTTTTGAAGCTCCGGGATCTCCCTGAAGGTGTGATGTAAAAATCAGACTGTGGAATAACTTGAAGGCAGACACCAGCAAGTTGCATACCCCTGAACACAAAATGGTAGACAGACAGAAGCAGCATTCTCAGCTCTCGCTGGACTTGATATTTTTGAGAAATAAATTAAGATAAATGTGACTGCA
>TU320759
ATTGCTCGAGATGAGCGCAACGTATCTGCGACAACTTTGCCTCCTTCATTTGGTCTGGTGCCTTGGATGTTGGAAGGTGACAGAAGCTAATCCCAGCAAAGAGTGTGAACATGGAATTGTTTTGACAAAGGGTCCTGGGATCCAGACTGATGTGGGAGATATGTGGAGAGATCAGAATGAGCAAGTTCAGAATGTATTCAAAAGATTCCTGTTCCACTATTCAAAGGCAAACTCAGTAGGCTCTATACAGCATGCGgacaacaaccctaagcacatgtgaccgatgtgaaatggctagctagttagcggtggtgctcaCTAATAGCGCTtcgatcggtgacgtcactc

Function

NR:

description
neuromedin-U-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021597580.2 False 2033 mRNA 0.41 6 62121199 62125952
XM_036974864.1 False 2025 mRNA 0.41 6 62121210 62125952
XM_021597579.2 False 2089 mRNA 0.41 7 62121218 62126483
TU320759 True 348 lncRNA 0.47 6 62122795 62125063

Neighbor

gene id symbol gene type direction distance location
LOC110520325 LOC106586471 coding upstream 279993 61836665 ~ 61841206 (+)
LOC110520324 LOC106586470 coding upstream 288786 61773433 ~ 61832413 (+)
LOC110520321 LOC106586467 coding upstream 457791 61648705 ~ 61663408 (+)
LOC110504376 LOC106586465 coding upstream 473946 61590058 ~ 61647253 (+)
LOC110520316 itga4 coding upstream 615771 61475876 ~ 61505428 (+)
LOC110520333 LOC106586480 coding downstream 2551 62129034 ~ 62156042 (+)
cnot11 LOC106586484 coding downstream 48102 62174585 ~ 62180282 (+)
LOC110520339 lrrc63 coding downstream 66804 62193287 ~ 62200069 (+)
LOC110520341 LOC106586488 coding downstream 74348 62200831 ~ 62203750 (+)
med4 med4 coding downstream 122976 62249459 ~ 62254811 (+)
G282805 NA non-coding upstream 186 62113453 ~ 62121013 (+)
G282725 NA non-coding upstream 118177 62002667 ~ 62003022 (+)
G282712 NA non-coding upstream 138718 61982071 ~ 61982481 (+)
G282707 il-1rii non-coding upstream 157133 61957388 ~ 61964066 (+)
G282658 NA non-coding upstream 271525 61845290 ~ 61849674 (+)
G282786 NA non-coding downstream 161 62126644 ~ 62130112 (+)
G282815 LOC106575914 non-coding downstream 38400 62164883 ~ 62174362 (+)
G282822 NA non-coding downstream 43263 62169746 ~ 62171892 (+)
G282907 NA non-coding downstream 177000 62303483 ~ 62320393 (+)
G282976 NA non-coding downstream 282740 62409223 ~ 62409441 (+)
G281996 NA other upstream 1084094 61033766 ~ 61037105 (+)
G281714 NA other upstream 1227421 60891524 ~ 60893778 (+)
G281591 LOC106586456 other upstream 1363849 60740239 ~ 60757350 (+)
G281141 NA other upstream 1830632 60287388 ~ 60303967 (+)
LOC110520346 htr2a other downstream 241131 62367489 ~ 62408857 (+)
LOC110504398 LOC106586506 other downstream 579848 62705451 ~ 62712740 (+)
G284313 NA other downstream 889843 63016326 ~ 63022591 (+)
LOC110520364 LOC106586514 other downstream 999407 63124380 ~ 63129015 (+)

Expression


Co-expression Network