LOC110520345


Basic Information

Item Value
gene id LOC110520345
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62281719 ~ 62286818 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002472968.2
ATGATTACAAGTGTCATAATAAATGTTGTCTTTTTGTCTCATTAACAGAATCACTATTGTTCCTGCCTTGTCTCCGGCCATCTCTGCACCAGCTGTATGAATAATGAATGAAAACACCAGATGATGTAAAGGAGAACTAATGAAGTTTGCAGTTTGaacaggacacacaacacaCTCCAGTCAGATGAAGGAGGCAGCACACTGAGTGTTTCCACTTTCCATCTGCCACTGTGCTTGCGTAACCGTTCCAGAGGACAGTGTTGAGCAAGATGGGGGACCCAGCACCATGCAGCATGCAGCACCAGCTGTGACTCATGATGAGCAggactctctcttcctctttctcagtctctctgagcctgtctgtctgggtctatGGGGAGATGCTGGACCCCAGTAGCCTAGTTTTTTCTGGTAATTACCGTGCAATCAGTTTATAATTCATGTACCTTTTGAACTGAGAAGAGCAGGAGGTTGTCACAAGGTGTGGTAAGTGTGCAATAATACACGTGTACATGGTTTTATAAGTGGGGGGGCATAATAtcaatattatttatatatttttttaatccagtcggataaacactccaaacggCCTACCCGACGctcggaggcgtccgcatggtcctaaagcacacagttgccttgttttgtatcacattccaatgataaaactggggggacaAAAATGTCATTTCAGAATGTTCCTTCCCCAGTAAAAGTTTCACCCCTGTGTAATTGTGTAGCCTAATTACATTGTTGTGAAGGAGCATCAATCCACCCATTGTTAAAACTCCTAAATGTGACAATGAAATAAGTATGAAATTAAATAATTATTGAGTGTGTCTCTCTTCATTCAGTAAAGGACATGCCATTCCTCCAGCAtctatcaagtgcttgtcaacaCCTTTAAAATACATCATTATAGAGCTGCTGAATTGAAAGAATCTAACCTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002472968.2 True 956 mRNA 0.42 3 62281719 62286818

Neighbor

gene id symbol gene type direction distance location
LOC110520344 sucla2 coding upstream 8890 62254960 ~ 62272829 (+)
med4 med4 coding upstream 26908 62249459 ~ 62254811 (+)
LOC110520341 LOC106586488 coding upstream 77969 62200831 ~ 62203750 (+)
LOC110520339 lrrc63 coding upstream 81650 62193287 ~ 62200069 (+)
cnot11 LOC106586484 coding upstream 101437 62174585 ~ 62180282 (+)
LOC110520346 htr2a coding downstream 80671 62367489 ~ 62408857 (+)
LOC110520349 lrch1 coding downstream 136602 62423414 ~ 62430935 (+)
rubcnl rubcnl coding downstream 247828 62534646 ~ 62542031 (+)
dhrs12 LOC106586499 coding downstream 256759 62543577 ~ 62547782 (+)
LOC110504388 LOC106586502 coding downstream 311859 62598677 ~ 62612475 (+)
G282815 LOC106575914 non-coding upstream 107357 62164883 ~ 62174362 (+)
G282822 NA non-coding upstream 109827 62169746 ~ 62171892 (+)
G282743 NA non-coding upstream 119760 62113060 ~ 62161959 (+)
G282907 NA non-coding downstream 16665 62303483 ~ 62320393 (+)
G282976 NA non-coding downstream 122405 62409223 ~ 62409441 (+)
G283779 NA non-coding downstream 229983 62516801 ~ 62518422 (+)
G283802 LOC106613263 non-coding downstream 289665 62576483 ~ 62577684 (+)
G282707 il-1rii other upstream 320244 61957388 ~ 61964066 (+)
G281996 NA other upstream 1244614 61033766 ~ 61037105 (+)
G281714 NA other upstream 1387941 60891524 ~ 60893778 (+)
G281591 LOC106586456 other upstream 1524369 60740239 ~ 60757350 (+)
LOC110504398 LOC106586506 other downstream 419513 62705451 ~ 62712740 (+)
G284313 NA other downstream 729508 63016326 ~ 63022591 (+)
LOC110520364 LOC106586514 other downstream 839072 63124380 ~ 63129015 (+)
G284537 NA other downstream 980301 63267119 ~ 63312394 (+)

Expression


Co-expression Network